Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005225

Physical Location & Seq

Genomic Coordinates Forward (+)

18629173 .. 18644134

Gene Structure 14962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0131900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGACTAGTAAACGGGTGAATTTGGGTTCGGGACGTTACAACCGAGGAGCCTCCTCTTCTTCTGCCACTTTCGATTTCGTCCCTTATTCATGGTCATATGATGTCTTCCTGAGTTTTCGTGGTGAGGATACACGCTATGGTTTTACAGGCCACTTGCACAGTGCTCTGCTTCGAAAGGGAATCAACACCTTCATAGACAACGATCTTACAAGAGGAGACGAAATAGCACGGTCGCTTCTCAAAGTAATCGAAGAGTCAAGGATCTCGATCATTGTATTCTCTGAAAACTATGCATCATCGAAGTGGTGCTTGGATGAGCTGGTTCACATTCATCACTGCAATGAATCAAAGCAACAAATGGTGAGGCCAGTTTTCTACAAGGTGGTTCCTGCTGATGTAAGATACCAGAAAGGCAGTTATGGTGAAGCATTGGCGAAGCATGAAAGGAGATTCCCGGATAACTTGGAAAAGGTGGGAAGATGGAGGACAGCACTTACAAGATCAGCAAATTTGTCTGGATGGCATTACAAGGAGCAAGAGTCATCAAAGCGGTGTGATCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006102 GO:0008150 GO:0008152 GO:0008270 GO:0009060 GO:0009987 GO:0015980 GO:0016999 GO:0017144 GO:0019752 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046872 GO:0046914 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00020 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

187

Amino Acids

21.62

Weight (kDa)

9.38

Isoelectric Point (pI)

55.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	33 - 183	1.4e-51	TIR domain
TIR_2	PF13676	35 - 128	2.5e-15	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17130 AT2G17130 AT4G35260
fragaria_vesca	FvH4_2g16520 FvH4_2g16520 FvH4_2g16520 FvH4_2g16520 FvH4_2g16520 FvH4_2g16520
malus_domestica	MD05G1133600.v1.1 MD10G1138600.v1.1
prunus_persica	Prupe.3G128300_v2.0.a1 Prupe.8G177400_v2.0.a1 Prupe.8G177400_v2.0.a1 Prupe.8G177400_v2.0.a1
pyrus_communis	pycom07g23620
rosa_chinensis	RchiOBHm_Chr6g0280541
rosa_laevigata	RLG00000013056
rosa_multiflora	Rmu_co8141332.1_g000001 Rmu_sc0005585.1_g000001 Rmu_sc0015818.1_g000005
rosa_roxburghii	Rroxscaffold_7G00188000
rosa_rugosa	Rorug06G0131900 Rorug06G0132000
rosa_samantha	Rh6AG244400 Rh6BG246800 Rh6CG248200 Rh6DG239600
rosa_wichuraiana	Rw6G021170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	550
AclWI	GGATC	1 cut(s)	269
AcsI	RAATTY	2 cut(s)	19, 508
AhlI	ACTAGT	1 cut(s)	5
AjuI	GAANNNNNNNTTGG	2 cut(s)	293, 325
AluBI	AGCT	1 cut(s)	319
AluI	AGCT	1 cut(s)	319
Alw21I	GWGCWC	1 cut(s)	166
Alw26I	GTCTC	1 cut(s)	210
AlwI	GGATC	1 cut(s)	269
AoxI	GGCC	2 cut(s)	148, 365
ApoI	RAATTY	2 cut(s)	19, 508
AsuC2I	CCSGG	1 cut(s)	455
AsuHPI	GGTGA	4 cut(s)	28, 134, 373, 434
AsuII	TTCGAA	1 cut(s)	172
BbsI	GAAGAC	1 cut(s)	97
Bbv12I	GWGCWC	1 cut(s)	166
BccI	CCATC	2 cut(s)	474, 513
BciVI	GTATCC	1 cut(s)	121
BcnI	CCSGG	1 cut(s)	455
BcoDI	GTCTC	1 cut(s)	210
BcuI	ACTAGT	1 cut(s)	5
BfaI	CTAG	1 cut(s)	6
BfuI	GTATCC	1 cut(s)	121
Bme1390I	CCNGG	1 cut(s)	455
BmiI	GGNNCC	2 cut(s)	49, 387
BmrFI	CCNGG	1 cut(s)	455
BmsI	GCATC	1 cut(s)	302
BpiI	GAAGAC	1 cut(s)	97
Bpu14I	TTCGAA	1 cut(s)	172
BpuMI	CCSGG	1 cut(s)	455
BsaBI	GATNNNNATC	1 cut(s)	266
BsaJI	CCNNGG	1 cut(s)	43
BsaXI	ACNNNNNCTCC	2 cut(s)	524, 554
Bse1I	ACTGG	1 cut(s)	368
Bse3DI	GCAATG	1 cut(s)	346
Bse8I	GATNNNNATC	1 cut(s)	266
BseDI	CCNNGG	1 cut(s)	43
BseGI	GGATG	2 cut(s)	319, 524
BseJI	GATNNNNATC	1 cut(s)	266
BseMI	GCAATG	1 cut(s)	346
BseMII	CTCAG	1 cut(s)	101
BseNI	ACTGG	1 cut(s)	368
BseRI	GAGGAG	3 cut(s)	43, 60, 228
Bsh1285I	CGRYCG	1 cut(s)	233
BshFI	GGCC	2 cut(s)	150, 367
BsiEI	CGRYCG	1 cut(s)	233
BsiHKAI	GWGCWC	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	455
BslFI	GGGAC	2 cut(s)	45, 65
BsmAI	GTCTC	1 cut(s)	210
BsmBI	CGTCTC	1 cut(s)	210
BsmFI	GGGAC	2 cut(s)	45, 65
BsnI	GGCC	2 cut(s)	150, 367
Bsp119I	TTCGAA	1 cut(s)	172
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp143I	GATC	5 cut(s)	202, 261, 267, 500, 556
BspACI	CCGC	1 cut(s)	550
BspANI	GGCC	2 cut(s)	150, 367
BspCNI	CTCAG	1 cut(s)	102
BspLI	GGNNCC	2 cut(s)	49, 387
BspPI	GGATC	1 cut(s)	269
BspT104I	TTCGAA	1 cut(s)	172
BsrDI	GCAATG	1 cut(s)	346
BsrI	ACTGG	1 cut(s)	368
BssECI	CCNNGG	1 cut(s)	43
BssMI	GATC	5 cut(s)	202, 261, 267, 500, 556
Bst4CI	ACNGT	2 cut(s)	161, 231
Bst6I	CTCTTC	2 cut(s)	61, 246
BstBI	TTCGAA	1 cut(s)	172
BstDEI	CTNAG	1 cut(s)	110
BstF5I	GGATG	2 cut(s)	319, 524
BstKTI	GATC	5 cut(s)	205, 264, 270, 503, 559
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	5 cut(s)	202, 261, 267, 500, 556
BstMCI	CGRYCG	1 cut(s)	233
BstSCI	CCNGG	1 cut(s)	453
BstV2I	GAAGAC	1 cut(s)	97
BstX2I	RGATCY	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	261
BsuI	GTATCC	1 cut(s)	121
BsuRI	GGCC	2 cut(s)	150, 367
BtsCI	GGATG	2 cut(s)	319, 524
BtsI	GCAGTG	1 cut(s)	334
BtsIMutI	CAGTG	2 cut(s)	166, 334
CviAII	CATG	2 cut(s)	90, 440
CviJI	RGCY	4 cut(s)	50, 150, 319, 367
CviKI_1	RGCY	4 cut(s)	50, 150, 319, 367
DdeI	CTNAG	1 cut(s)	110
DpnI	GATC	5 cut(s)	204, 263, 269, 502, 558
DpnII	GATC	5 cut(s)	202, 261, 267, 500, 556
Eam1104I	CTCTTC	2 cut(s)	61, 246
EarI	CTCTTC	2 cut(s)	61, 246
EcoT22I	ATGCAT	1 cut(s)	295
Esp3I	CGTCTC	1 cut(s)	210
FaeI	CATG	2 cut(s)	93, 443
FaiI	YATR	8 cut(s)	91, 97, 99, 138, 194, 291, 420, 441
FalI	AAGNNNNNCTT	2 cut(s)	293, 325
FaqI	GGGAC	2 cut(s)	45, 65
FatI	CATG	2 cut(s)	89, 439
FauNDI	CATATG	1 cut(s)	97
FokI	GGATG	2 cut(s)	326, 531
FspBI	CTAG	1 cut(s)	6
HaeIII	GGCC	2 cut(s)	150, 367
HapII	CCGG	1 cut(s)	455
Hin1II	CATG	2 cut(s)	93, 443
HinfI	GANTC	5 cut(s)	180, 254, 344, 450, 539
HpaII	CCGG	1 cut(s)	455
HphI	GGTGA	4 cut(s)	28, 134, 373, 434
Hpy166II	GTNNAC	2 cut(s)	11, 325
Hpy188I	TCNGA	1 cut(s)	283
Hpy188III	TCNNGA	4 cut(s)	30, 109, 265, 516
Hpy8I	GTNNAC	2 cut(s)	11, 325
HpyAV	CCTTC	1 cut(s)	199
HpyCH4III	ACNGT	2 cut(s)	161, 231
HpyCH4IV	ACGT	1 cut(s)	34
HpyCH4V	TGCA	3 cut(s)	157, 293, 339
HpyF3I	CTNAG	1 cut(s)	110
HpySE526I	ACGT	1 cut(s)	34
Hsp92II	CATG	2 cut(s)	93, 443
Kzo9I	GATC	5 cut(s)	202, 261, 267, 500, 556
LmnI	GCTCC	2 cut(s)	47, 532
LpnPI	CCDG	8 cut(s)	122, 132, 305, 381, 402, 419, 468, 501
LweI	GCATC	1 cut(s)	302
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	1 cut(s)	34
MaeIII	GTNAC	1 cut(s)	35
MalI	GATC	5 cut(s)	204, 263, 269, 502, 558
MboI	GATC	5 cut(s)	202, 261, 267, 500, 556
MboII	GAAGA	5 cut(s)	48, 51, 97, 263, 489
MflI	RGATCY	1 cut(s)	261
MhlI	GDGCHC	1 cut(s)	166
MluCI	AATT	2 cut(s)	19, 508
MlyI	GAGTC	2 cut(s)	263, 548
MnlI	CCTC	7 cut(s)	38, 61, 64, 118, 206, 357, 477
Mph1103I	ATGCAT	1 cut(s)	295
MslI	CAYNNNNRTG	2 cut(s)	301, 339
MspI	CCGG	1 cut(s)	455
MspR9I	CCNGG	1 cut(s)	455
NciI	CCSGG	1 cut(s)	455
NdeI	CATATG	1 cut(s)	97
NdeII	GATC	5 cut(s)	202, 261, 267, 500, 556
NlaIII	CATG	2 cut(s)	93, 443
NlaIV	GGNNCC	2 cut(s)	49, 387
NsiI	ATGCAT	1 cut(s)	295
NspV	TTCGAA	1 cut(s)	172
PcsI	WCGNNNNNNNCGW	1 cut(s)	40
PfeI	GAWTC	3 cut(s)	180, 344, 450
PfoI	TCCNGGA	1 cut(s)	453
PleI	GAGTC	2 cut(s)	262, 547
PpsI	GAGTC	2 cut(s)	262, 547
PspN4I	GGNNCC	2 cut(s)	49, 387
PsuI	RGATCY	1 cut(s)	261
RseI	CAYNNNNRTG	2 cut(s)	301, 339
Sau3AI	GATC	5 cut(s)	202, 261, 267, 500, 556
SchI	GAGTC	2 cut(s)	263, 548
ScrFI	CCNGG	1 cut(s)	455
SduI	GDGCHC	1 cut(s)	166
SetI	ASST	5 cut(s)	37, 191, 321, 384, 474
SfaNI	GCATC	1 cut(s)	302
SfuI	TTCGAA	1 cut(s)	172
SmiMI	CAYNNNNRTG	2 cut(s)	301, 339
SpeI	ACTAGT	1 cut(s)	5
Sse9I	AATT	2 cut(s)	19, 508
SsiI	CCGC	1 cut(s)	550
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	1 cut(s)	453
TaaI	ACNGT	2 cut(s)	161, 231
TaiI	ACGT	1 cut(s)	37
TaqI	TCGA	5 cut(s)	72, 172, 249, 266, 299
TasI	AATT	2 cut(s)	19, 508
TfiI	GAWTC	3 cut(s)	180, 344, 450
TscAI	CASTG	2 cut(s)	166, 341
TspDTI	ATGAA	5 cut(s)	78, 181, 320, 357, 456
TspRI	CASTG	2 cut(s)	166, 341
XapI	RAATTY	2 cut(s)	19, 508
XspI	CTAG	1 cut(s)	6
Zsp2I	ATGCAT	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.