FvH4_2g17440
NAC Family

Probably inactive leucine-rich repeat receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
15027413 .. 15031920
4508 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g17440.t3

Sequence Viewer

Length: 1860 bp
ATGGCTTTCCTAAGGCGTATGTTGAATGGACGAGATCTTGGCATTTTTGTGTTATTGTTATTGCTTAGTTGTAGGTTCAGCCATGGTGTTGAGAGTGATGTAAACTGCTTGAAAAGTATAAAAGCAGCATTGGAGGACCCTCTAGACATGTTAAGCTCTTCATGGGATTTTAACAACAACACTGAAGGTTTCATCTGTAACTTTCTGGGAGTGGAGTGTTGGCACCCTCATGAGAGCAAAGTTTTAAATATCAAGCTTGGGGATTTGGGACTCAAAGGCCAGTTTCCTCGCGGAGTAGTGAATTGTACAAGCTTAACAGGGTTAGATCTTTCGAGCAACAACCTTAGTGGATCTATTCCTGAGGATATTGATTATTTGATCCATTACATTACATCGCTTGATCTATCTTCCAACAACTTCTCAGGGACAATTCCCAGGAAACTCTTCAATTGTACTTTTCTAAATGTCCTTAAACTTGACAATAACAAGCTGACGGGTCAGATTCCTCCAGAACTTGGTCAGCTCAGTAGGCTTAAAACATTTAGTGTGGTCAGCAATCAACTGTCTGGGCAAATCCCCTACTTCCAGAATGGTACAATTGGAGTGGAAAGCTATGCAAACAATCCTGGACTTTGTGGTTCCCCTTTGAAAAGTTGCCAGGCAGCTGCCAAGAAGTCTAACAGTGTAGTTATAGTAGCAGCAGGAGTCGGGGGTGCAACTTTCGCAGCATTAGTAGTGATCATTGCGTTGTTCTTCTTCATGCGTAGAGTGTCTGCAAGGAAGAAGGAAGAGGACCCTGAAGGGAACAAATGGGCAAGGAGTTTGAAGGGAACTAAAGGAATCAAGGTTTCCATGTTCAAGAAGTCGGTTTCTAAAATGAGACTGAGTGATCTCATGAAGGCTACCAACAATTTCAGCAAAGATAATATCATTGGATCAGGAAGAACTGGAACTGTTTACAAGGCAGTGCTTGATGATGGCACCTCACTTATGGTCAAGAGGTTGCAGGAATCTCAATACTCTGAGAAAGAGTTTCTGTCTGAGATGTCTACTCTGGGTAGCGTAGAACACCGTAACTTGGTTCCCCTTTTGGGTTTTTGTGTGGCAAAGAAGGAAAGGCTTTTGGTGTATAAGCACATGCTTCATGGTACCCTCCATGACCAGCTACATCCTGTGGAAGCTGATGGTGCCAAGATTATGGACTGGCCTACAAGGCTAAAAATTGGGATAGGAGCAGCCAGAGGATTAGCGTGGCTTCATCATAACTGTAACCCTCGAATTATCCACCGAAACATAAGCTCCAAATGCATCTTGCTGGATGCAGATTTTGAGCCTAAGATATCTGATTTTGGCCTAGCTAGGCTCATGAATCCGATTGATACACATTTGAGTACTTTTGTGAATGGGGAGTTTGGAGATCTGGGTTATGTGGCTCCTGAGTACACAAGAACTTTAGTGGCCACTCCGAAGGGGGATGTTTACAGCTTTGGAACTGTTCTTCTTGAGTTGGTTACTGGTGAAAGAGCTACCCATATTTCTAAAGCTCCAGAAGATTTCAAAGGAAACTTGGTGGAATGGATCTTGCAGCTGTCAAGCAAATCTCAACTCACAGATGCAATTGACAAATCCTTGATTGGAAAGGGTGTGGATGAAGAGGTTTTCCAGTTCCTTAAAGTTGCTTGCAACTGTGTGGTGCCTACTTCCAAGGAGAGGCCTACTATGTTTGAAGTATTCCAGCTTCTACGAGCAATTGGACAGAAATATAACTTCACAATTGAAGAGGAGATGTCAACGCCTTCAAATAATGATGATTGTGTAGGAGAACTCATTGTTGCTCGAGAGATGATGGAGATTAATTGA

Protein Analysis

620

Amino Acids

68.41

Weight (kDa)

7.86

Isoelectric Point (pI)

28.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 31 - 74 6.6e-06 Leucine rich repeat N-terminal domain
Pkinase PF00069 306 - 579 4.4e-34 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 308 - 576 1.6e-35 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1148
AccB1I GGYRCC 5 cut(s) 222, 980, 1148, 1187, 1693
AccB7I CCANNNNNTGG 1 cut(s) 515
AccI GTMKAC 1 cut(s) 1049
AccII CGCG 1 cut(s) 291
AciI CCGC 1 cut(s) 291
AclWI GGATC 4 cut(s) 358, 373, 943, 1586
AcoI YGGCCR 1 cut(s) 1458
AcuI CTGAAG 2 cut(s) 204, 819
AfaI GTAC 6 cut(s) 307, 454, 595, 1150, 1393, 1442
AfiI CCNNNNNNNGG 4 cut(s) 515, 1078, 1091, 1710
AflIII ACRYGT 1 cut(s) 147
AjnI CCWGG 3 cut(s) 434, 625, 657
Alw26I GTCTC 1 cut(s) 874
AlwI GGATC 4 cut(s) 358, 373, 943, 1586
Ama87I CYCGRG 1 cut(s) 1836
AoxI GGCC 5 cut(s) 277, 1205, 1351, 1458, 1712
ApeKI GCWGC 7 cut(s) 125, 662, 665, 698, 725, 1235, 1585
AseI ATTAAT 1 cut(s) 1854
Asp700I GAANNNNTTC 1 cut(s) 443
Asp718I GGTACC 1 cut(s) 1148
AspS9I GGNCC 2 cut(s) 136, 793
AsuHPI GGTGA 1 cut(s) 1529
AvaI CYCGRG 1 cut(s) 1836
AvaII GGWCC 2 cut(s) 136, 793
AxyI CCTNAGG 2 cut(s) 11, 360
BalI TGGCCA 1 cut(s) 1460
BanI GGYRCC 5 cut(s) 222, 980, 1148, 1187, 1693
BarI GAAGNNNNNNTAC 2 cut(s) 1722, 1754
BbvI GCAGC 7 cut(s) 137, 652, 674, 710, 737, 1247, 1597
BccI CCATC 3 cut(s) 971, 1178, 1840
BciT130I CCWGG 3 cut(s) 436, 627, 659
BclI TGATCA 1 cut(s) 738
BcoDI GTCTC 1 cut(s) 874
BfaI CTAG 3 cut(s) 143, 1355, 1359
BglI GCCNNNNNGGC 1 cut(s) 1213
BglII AGATCT 3 cut(s) 34, 325, 1417
BisI GCNGC 7 cut(s) 126, 663, 666, 699, 726, 1236, 1586
BlsI GCNGC 7 cut(s) 127, 664, 667, 700, 727, 1237, 1587
BmcAI AGTACT 1 cut(s) 1393
Bme1390I CCNGG 3 cut(s) 436, 627, 659
Bme18I GGWCC 2 cut(s) 136, 793
BmeT110I CYCGRG 1 cut(s) 1836
BmgT120I GGNCC 2 cut(s) 136, 793
BmrFI CCNGG 3 cut(s) 436, 627, 659
BmsI GCATC 3 cut(s) 1309, 1317, 1603
BpmI CTGGAG 2 cut(s) 492, 1530
BpuEI CTTGAG 1 cut(s) 1523
BsaJI CCNNGG 3 cut(s) 82, 434, 1704
BsaXI ACNNNNNCTCC 2 cut(s) 1283, 1313
Bsc4I CCNNNNNNNGG 4 cut(s) 515, 1078, 1091, 1710
Bse1I ACTGG 5 cut(s) 280, 952, 1208, 1519, 1663
Bse21I CCTNAGG 2 cut(s) 11, 360
Bse3DI GCAATG 1 cut(s) 741
BseBI CCWGG 3 cut(s) 436, 627, 659
BseDI CCNNGG 3 cut(s) 82, 434, 1704
BseGI GGATG 4 cut(s) 1168, 1324, 1480, 1654
BseLI CCNNNNNNNGG 4 cut(s) 515, 1078, 1091, 1710
BseMI GCAATG 1 cut(s) 741
BseMII CTCAG 7 cut(s) 351, 435, 538, 875, 1014, 1032, 1428
BseNI ACTGG 5 cut(s) 280, 952, 1208, 1519, 1663
BseRI GAGGAG 1 cut(s) 1796
BseXI GCAGC 7 cut(s) 137, 652, 674, 710, 737, 1247, 1597
Bsh1236I CGCG 1 cut(s) 291
BshFI GGCC 5 cut(s) 279, 1207, 1353, 1460, 1714
BshNI GGYRCC 5 cut(s) 222, 980, 1148, 1187, 1693
BsiHKCI CYCGRG 1 cut(s) 1836
BslFI GGGAC 2 cut(s) 282, 439
BslI CCNNNNNNNGG 4 cut(s) 515, 1078, 1091, 1710
BsmAI GTCTC 1 cut(s) 874
BsmFI GGGAC 2 cut(s) 282, 439
BsnI GGCC 5 cut(s) 279, 1207, 1353, 1460, 1714
BsoBI CYCGRG 1 cut(s) 1836
Bsp1407I TGTACA 1 cut(s) 305
Bsp19I CCATGG 1 cut(s) 82
BspACI CCGC 1 cut(s) 291
BspANI GGCC 5 cut(s) 279, 1207, 1353, 1460, 1714
BspCNI CTCAG 7 cut(s) 352, 434, 537, 876, 1015, 1033, 1429
BspFNI CGCG 1 cut(s) 291
BspHI TCATGA 3 cut(s) 229, 894, 1365
BspPI GGATC 4 cut(s) 358, 373, 943, 1586
BspQI GCTCTTC 1 cut(s) 163
BspT107I GGYRCC 5 cut(s) 222, 980, 1148, 1187, 1693
BsrDI GCAATG 1 cut(s) 741
BsrGI TGTACA 1 cut(s) 305
BsrI ACTGG 5 cut(s) 280, 952, 1208, 1519, 1663
BssECI CCNNGG 3 cut(s) 82, 434, 1704
BssT1I CCWWGG 2 cut(s) 82, 1704
Bst2UI CCWGG 3 cut(s) 436, 627, 659
Bst4CI ACNGT 7 cut(s) 564, 683, 955, 1073, 1268, 1495, 1688
Bst6I CTCTTC 5 cut(s) 163, 449, 783, 1647, 1773
BstAUI TGTACA 1 cut(s) 305
BstC8I GCNNGC 1 cut(s) 1681
BstDSI CCRYGG 1 cut(s) 82
BstF5I GGATG 4 cut(s) 1168, 1324, 1480, 1654
BstFNI CGCG 1 cut(s) 291
BstMAI GTCTC 1 cut(s) 874
BstMWI GCNNNNNNNGC 5 cut(s) 529, 722, 1187, 1213, 1305
BstNI CCWGG 3 cut(s) 436, 627, 659
BstNSI RCATGY 2 cut(s) 151, 1141
BstSCI CCNGG 3 cut(s) 434, 625, 657
BstUI CGCG 1 cut(s) 291
BstV1I GCAGC 7 cut(s) 137, 652, 674, 710, 737, 1247, 1597
BstX2I RGATCY 5 cut(s) 34, 325, 350, 1417, 1578
BstXI CCANNNNNNTGG 1 cut(s) 1198
BstYI RGATCY 5 cut(s) 34, 325, 350, 1417, 1578
Bsu36I CCTNAGG 2 cut(s) 11, 360
BsuRI GGCC 5 cut(s) 279, 1207, 1353, 1460, 1714
BtgI CCRYGG 1 cut(s) 82
BtgZI GCGATG 1 cut(s) 378
BtsCI GGATG 4 cut(s) 1168, 1324, 1480, 1654
BtsI GCAGTG 1 cut(s) 972
BtsIMutI CAGTG 3 cut(s) 180, 688, 972
Cac8I GCNNGC 1 cut(s) 1681
CciI TCATGA 3 cut(s) 229, 894, 1365
Cfr13I GGNCC 2 cut(s) 136, 793
Csp6I GTAC 6 cut(s) 306, 453, 594, 1149, 1392, 1441
CspCI CAANNNNNGTGG 4 cut(s) 328, 363, 585, 620
CviQI GTAC 6 cut(s) 306, 453, 594, 1149, 1392, 1441
DraI TTTAAA 1 cut(s) 246
EaeI YGGCCR 1 cut(s) 1458
Eam1104I CTCTTC 5 cut(s) 163, 449, 783, 1647, 1773
EarI CTCTTC 5 cut(s) 163, 449, 783, 1647, 1773
Eco130I CCWWGG 2 cut(s) 82, 1704
Eco147I AGGCCT 1 cut(s) 1714
Eco32I GATATC 1 cut(s) 1341
Eco47I GGWCC 2 cut(s) 136, 793
Eco57I CTGAAG 2 cut(s) 204, 819
Eco81I CCTNAGG 2 cut(s) 11, 360
Eco88I CYCGRG 1 cut(s) 1836
EcoO109I RGGNCCY 2 cut(s) 136, 793
EcoRII CCWGG 3 cut(s) 434, 625, 657
EcoRV GATATC 1 cut(s) 1341
EcoT14I CCWWGG 2 cut(s) 82, 1704
EcoT22I ATGCAT 1 cut(s) 1310
ErhI CCWWGG 2 cut(s) 82, 1704
FaqI GGGAC 2 cut(s) 282, 439
FbaI TGATCA 1 cut(s) 738
FblI GTMKAC 1 cut(s) 1049
Fnu4HI GCNGC 7 cut(s) 126, 663, 666, 699, 726, 1236, 1586
FokI GGATG 4 cut(s) 1155, 1331, 1487, 1661
Fsp4HI GCNGC 7 cut(s) 126, 663, 666, 699, 726, 1236, 1586
FspBI CTAG 3 cut(s) 143, 1355, 1359
GluI GCNGC 7 cut(s) 126, 663, 666, 699, 726, 1236, 1586
GsuI CTGGAG 2 cut(s) 492, 1530
HaeIII GGCC 5 cut(s) 279, 1207, 1353, 1460, 1714
HincII GTYRAC 1 cut(s) 1791
HindII GTYRAC 1 cut(s) 1791
HindIII AAGCTT 2 cut(s) 254, 310
HinfI GANTC 6 cut(s) 270, 502, 705, 840, 1010, 1369
HphI GGTGA 1 cut(s) 1529
Hpy166II GTNNAC 6 cut(s) 103, 958, 1050, 1443, 1480, 1791
Hpy188I TCNGA 6 cut(s) 501, 1024, 1042, 1345, 1374, 1467
Hpy8I GTNNAC 6 cut(s) 103, 958, 1050, 1443, 1480, 1791
HpyAV CCTTC 8 cut(s) 179, 778, 794, 820, 892, 1105, 1462, 1806
HpyCH4III ACNGT 7 cut(s) 564, 683, 955, 1073, 1268, 1495, 1688
HpyCH4V TGCA 9 cut(s) 617, 716, 776, 1006, 1308, 1322, 1585, 1616, 1683
HpyF10VI GCNNNNNNNGC 5 cut(s) 529, 722, 1187, 1213, 1305
KpnI GGTACC 1 cut(s) 1152
Ksp22I TGATCA 1 cut(s) 738
LguI GCTCTTC 1 cut(s) 163
LmnI GCTCC 4 cut(s) 1232, 1304, 1438, 1549
Lsp1109I GCAGC 7 cut(s) 137, 652, 674, 710, 737, 1247, 1597
LweI GCATC 3 cut(s) 1309, 1317, 1603
MaeI CTAG 3 cut(s) 143, 1355, 1359
MaeIII GTNAC 4 cut(s) 197, 1073, 1268, 1510
MfeI CAATTG 5 cut(s) 448, 597, 1617, 1749, 1773
MflI RGATCY 5 cut(s) 34, 325, 350, 1417, 1578
MlsI TGGCCA 1 cut(s) 1460
MluNI TGGCCA 1 cut(s) 1460
MlyI GAGTC 2 cut(s) 264, 714
MmeI TCCRAC 1 cut(s) 435
Mox20I TGGCCA 1 cut(s) 1460
Mph1103I ATGCAT 1 cut(s) 1310
MroXI GAANNNNTTC 1 cut(s) 443
MscI TGGCCA 1 cut(s) 1460
MseI TTAA 8 cut(s) 152, 171, 245, 314, 471, 534, 1671, 1854
MslI CAYNNNNRTG 2 cut(s) 47, 228
Msp20I TGGCCA 1 cut(s) 1460
MspA1I CMGCKG 2 cut(s) 665, 1588
MspR9I CCNGG 3 cut(s) 436, 627, 659
MunI CAATTG 5 cut(s) 448, 597, 1617, 1749, 1773
MvaI CCWGG 3 cut(s) 436, 627, 659
MvnI CGCG 1 cut(s) 291
MwoI GCNNNNNNNGC 5 cut(s) 529, 722, 1187, 1213, 1305
NcoI CCATGG 1 cut(s) 82
NsiI ATGCAT 1 cut(s) 1310
NspI RCATGY 2 cut(s) 151, 1141
PaeR7I CTCGAG 1 cut(s) 1836
PagI TCATGA 3 cut(s) 229, 894, 1365
PceI AGGCCT 1 cut(s) 1714
PciI ACATGT 1 cut(s) 147
PciSI GCTCTTC 1 cut(s) 163
PdmI GAANNNNTTC 1 cut(s) 443
PfeI GAWTC 4 cut(s) 502, 840, 1010, 1369
PflMI CCANNNNNTGG 1 cut(s) 515
PfoI TCCNGGA 1 cut(s) 625
PkrI GCNGC 7 cut(s) 127, 664, 667, 700, 727, 1237, 1587
PleI GAGTC 2 cut(s) 264, 713
PpsI GAGTC 2 cut(s) 264, 713
PpuMI RGGWCCY 2 cut(s) 136, 793
PscI ACATGT 1 cut(s) 147
PshBI ATTAAT 1 cut(s) 1854
Psp5II RGGWCCY 2 cut(s) 136, 793
Psp6I CCWGG 3 cut(s) 434, 625, 657
PspGI CCWGG 3 cut(s) 434, 625, 657
PspPI GGNCC 2 cut(s) 136, 793
PspPPI RGGWCCY 2 cut(s) 136, 793
PsuI RGATCY 5 cut(s) 34, 325, 350, 1417, 1578
PvuII CAGCTG 2 cut(s) 665, 1588
RsaI GTAC 6 cut(s) 307, 454, 595, 1150, 1393, 1442
RsaNI GTAC 6 cut(s) 306, 453, 594, 1149, 1392, 1441
RseI CAYNNNNRTG 2 cut(s) 47, 228
SapI GCTCTTC 1 cut(s) 163
SaqAI TTAA 8 cut(s) 152, 171, 245, 314, 471, 534, 1671, 1854
SatI GCNGC 7 cut(s) 126, 663, 666, 699, 726, 1236, 1586
Sau96I GGNCC 2 cut(s) 136, 793
ScaI AGTACT 1 cut(s) 1393
SchI GAGTC 2 cut(s) 264, 714
ScrFI CCNGG 3 cut(s) 436, 627, 659
SfaNI GCATC 3 cut(s) 1309, 1317, 1603
Sfr274I CTCGAG 1 cut(s) 1836
SinI GGWCC 2 cut(s) 136, 793
SlaI CTCGAG 1 cut(s) 1836
SmiMI CAYNNNNRTG 2 cut(s) 47, 228
SmlI CTYRAG 2 cut(s) 1502, 1836
SmoI CTYRAG 2 cut(s) 1502, 1836
SseBI AGGCCT 1 cut(s) 1714
SsiI CCGC 1 cut(s) 291
SspMI CTAG 3 cut(s) 143, 1355, 1359
StuI AGGCCT 1 cut(s) 1714
StyD4I CCNGG 3 cut(s) 434, 625, 657
StyI CCWWGG 2 cut(s) 82, 1704
TaaI ACNGT 7 cut(s) 564, 683, 955, 1073, 1268, 1495, 1688
TaqI TCGA 3 cut(s) 332, 1276, 1837
TatI WGTACW 4 cut(s) 305, 452, 1391, 1440
TfiI GAWTC 4 cut(s) 502, 840, 1010, 1369
Tru1I TTAA 8 cut(s) 152, 171, 245, 314, 471, 534, 1671, 1854
Tru9I TTAA 8 cut(s) 152, 171, 245, 314, 471, 534, 1671, 1854
TscAI CASTG 3 cut(s) 187, 688, 972
TseI GCWGC 7 cut(s) 125, 662, 665, 698, 725, 1235, 1585
TspDTI ATGAA 8 cut(s) 150, 181, 748, 911, 1133, 1247, 1382, 1665
TspRI CASTG 3 cut(s) 187, 688, 972
Van91I CCANNNNNTGG 1 cut(s) 515
VpaK11BI GGWCC 2 cut(s) 136, 793
VspI ATTAAT 1 cut(s) 1854
XbaI TCTAGA 1 cut(s) 142
XceI RCATGY 2 cut(s) 151, 1141
XhoI CTCGAG 1 cut(s) 1836
XmiI GTMKAC 1 cut(s) 1049
XmnI GAANNNNTTC 1 cut(s) 443
XspI CTAG 3 cut(s) 143, 1355, 1359
ZrmI AGTACT 1 cut(s) 1393
Zsp2I ATGCAT 1 cut(s) 1310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.