Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002553.1

Orthogroup ID

OG0004418

Physical Location & Seq

Genomic Coordinates Forward (+)

119054 .. 119509

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002553.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atgcattttctttgtaatgagcagattactattcaatattgtgtggcaaagaaggaaaggcttttggtgtataagtacatgcctcatggtaccctccatgaccagctacatcctgtggaagctgatggtgccaagattatggactggcctacaaggctgaaaattgggataggagcagccagaggattagcgtggcttcatcataactgtaatcctcgaattatccaccgaaacataagctccaaatgcatcttactggatgcagattttgagccgaagatttctgattttggcctagctaggctcatgaatccaattgatacacatttgagtacttttgtgaatggggagttcggagatctgggttatgtggctcctgagtatacaagaactttagtggccactccgaaaggggatgtttacagctttggaactgtacttcttgagttatcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

151

Amino Acids

17.04

Weight (kDa)

6.69

Isoelectric Point (pI)

19.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48380
fragaria_vesca	FvH4_2g17440 FvH4_2g17440 FvH4_2g17440
malus_domestica	MD05G1153300.v1.1
prunus_persica	Prupe.8G186700_v2.0.a1
pyrus_communis	pycom05g14770 pycom10g12770
rosa_chinensis	RchiOBHm_Chr6g0248541 RchiOBHm_Chr6g0282151
rosa_laevigata	RLG00000012905 RLG00000015144
rosa_multiflora	Rmu_sc0002553.1_g000025 Rmu_sc0002553.1_g000026 Rmu_sc0011940.1_g000001 Rmu_sc0021471.1_g000006
rosa_roxburghii	Rroxscaffold_7G00186440 Rroxscaffold_7G00213230
rosa_rugosa	Rorug05G0532000 Rorug06G0145800
rosa_samantha	Rh6AG048900 Rh6AG258800 Rh6BG044100 Rh6BG044400 Rh6BG262100 Rh6CG041000 Rh6CG261100 Rh6DG037200 Rh6DG253100
rosa_wichuraiana	Rw6G004150 Rw6G004230 Rw6G022400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	89
AccB1I	GGYRCC	2 cut(s)	89, 128
AccI	GTMKAC	1 cut(s)	383
AcoI	YGGCCR	1 cut(s)	399
AfaI	GTAC	4 cut(s)	77, 91, 334, 438
AgsI	TTSAA	1 cut(s)	35
AluBI	AGCT	5 cut(s)	106, 122, 240, 299, 426
AluI	AGCT	5 cut(s)	106, 122, 240, 299, 426
AoxI	GGCC	3 cut(s)	146, 292, 399
ApeKI	GCWGC	1 cut(s)	176
Asp718I	GGTACC	1 cut(s)	89
BalI	TGGCCA	1 cut(s)	401
BanI	GGYRCC	2 cut(s)	89, 128
BbvI	GCAGC	1 cut(s)	188
BccI	CCATC	1 cut(s)	119
BfaI	CTAG	2 cut(s)	296, 300
BglI	GCCNNNNNGGC	1 cut(s)	154
BglII	AGATCT	1 cut(s)	358
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
BmcAI	AGTACT	1 cut(s)	334
BmiI	GGNNCC	3 cut(s)	91, 130, 375
BmsI	GCATC	2 cut(s)	250, 258
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bse1I	ACTGG	2 cut(s)	149, 261
BseGI	GGATG	3 cut(s)	109, 265, 421
BseMII	CTCAG	1 cut(s)	369
BseNI	ACTGG	2 cut(s)	149, 261
BseXI	GCAGC	1 cut(s)	188
BshFI	GGCC	3 cut(s)	148, 294, 401
BshNI	GGYRCC	2 cut(s)	89, 128
BsnI	GGCC	3 cut(s)	148, 294, 401
Bsp143I	GATC	1 cut(s)	358
BspANI	GGCC	3 cut(s)	148, 294, 401
BspCNI	CTCAG	1 cut(s)	370
BspHI	TCATGA	1 cut(s)	306
BspLI	GGNNCC	3 cut(s)	91, 130, 375
BspT107I	GGYRCC	2 cut(s)	89, 128
BsrI	ACTGG	2 cut(s)	149, 261
BssMI	GATC	1 cut(s)	358
BssNAI	GTATAC	1 cut(s)	384
Bst1107I	GTATAC	1 cut(s)	384
Bst4CI	ACNGT	2 cut(s)	209, 436
BstDEI	CTNAG	1 cut(s)	378
BstF5I	GGATG	3 cut(s)	109, 265, 421
BstKTI	GATC	1 cut(s)	361
BstMBI	GATC	1 cut(s)	358
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 154, 246
BstNSI	RCATGY	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	188
BstX2I	RGATCY	1 cut(s)	358
BstXI	CCANNNNNNTGG	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	358
BstZ17I	GTATAC	1 cut(s)	384
BsuRI	GGCC	3 cut(s)	148, 294, 401
BtsCI	GGATG	3 cut(s)	109, 265, 421
CciI	TCATGA	1 cut(s)	306
Csp6I	GTAC	4 cut(s)	76, 90, 333, 437
CviAII	CATG	4 cut(s)	79, 86, 98, 307
CviQI	GTAC	4 cut(s)	76, 90, 333, 437
DdeI	CTNAG	1 cut(s)	378
DpnI	GATC	1 cut(s)	360
DpnII	GATC	1 cut(s)	358
EaeI	YGGCCR	1 cut(s)	399
EcoT22I	ATGCAT	2 cut(s)	6, 251
FaeI	CATG	4 cut(s)	82, 89, 101, 310
FatI	CATG	4 cut(s)	78, 85, 97, 306
FblI	GTMKAC	1 cut(s)	383
Fnu4HI	GCNGC	1 cut(s)	177
FokI	GGATG	3 cut(s)	96, 272, 428
Fsp4HI	GCNGC	1 cut(s)	177
FspBI	CTAG	2 cut(s)	296, 300
GluI	GCNGC	1 cut(s)	177
HaeIII	GGCC	3 cut(s)	148, 294, 401
Hin1II	CATG	4 cut(s)	82, 89, 101, 310
HinfI	GANTC	1 cut(s)	310
Hpy166II	GTNNAC	2 cut(s)	384, 421
Hpy188I	TCNGA	3 cut(s)	286, 356, 408
Hpy188III	TCNNGA	4 cut(s)	307, 377, 443, 453
Hpy8I	GTNNAC	2 cut(s)	384, 421
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	2 cut(s)	209, 436
HpyCH4V	TGCA	3 cut(s)	4, 249, 263
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 154, 246
HpyF3I	CTNAG	1 cut(s)	378
Hsp92II	CATG	4 cut(s)	82, 89, 101, 310
KpnI	GGTACC	1 cut(s)	93
Kzo9I	GATC	1 cut(s)	358
LmnI	GCTCC	3 cut(s)	173, 245, 379
LpnPI	CCDG	7 cut(s)	116, 126, 130, 193, 242, 347, 390
Lsp1109I	GCAGC	1 cut(s)	188
LweI	GCATC	2 cut(s)	250, 258
MaeI	CTAG	2 cut(s)	296, 300
MalI	GATC	1 cut(s)	360
MboI	GATC	1 cut(s)	358
MboII	GAAGA	1 cut(s)	289
MfeI	CAATTG	1 cut(s)	315
MflI	RGATCY	1 cut(s)	358
MlsI	TGGCCA	1 cut(s)	401
MluCI	AATT	3 cut(s)	162, 219, 315
MluNI	TGGCCA	1 cut(s)	401
MnlI	CCTC	4 cut(s)	93, 104, 176, 225
Mox20I	TGGCCA	1 cut(s)	401
Mph1103I	ATGCAT	2 cut(s)	6, 251
MscI	TGGCCA	1 cut(s)	401
Msp20I	TGGCCA	1 cut(s)	401
MunI	CAATTG	1 cut(s)	315
MwoI	GCNNNNNNNGC	3 cut(s)	128, 154, 246
NdeII	GATC	1 cut(s)	358
NlaIII	CATG	4 cut(s)	82, 89, 101, 310
NlaIV	GGNNCC	3 cut(s)	91, 130, 375
NsiI	ATGCAT	2 cut(s)	6, 251
NspI	RCATGY	1 cut(s)	82
PagI	TCATGA	1 cut(s)	306
PfeI	GAWTC	1 cut(s)	310
PkrI	GCNGC	1 cut(s)	178
PspN4I	GGNNCC	3 cut(s)	91, 130, 375
PsuI	RGATCY	1 cut(s)	358
RsaI	GTAC	4 cut(s)	77, 91, 334, 438
RsaNI	GTAC	4 cut(s)	76, 90, 333, 437
SatI	GCNGC	1 cut(s)	177
Sau3AI	GATC	1 cut(s)	358
ScaI	AGTACT	1 cut(s)	334
SetI	ASST	5 cut(s)	108, 124, 242, 301, 428
SfaNI	GCATC	2 cut(s)	250, 258
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	3 cut(s)	162, 219, 315
SspI	AATATT	1 cut(s)	38
SspMI	CTAG	2 cut(s)	296, 300
TaaI	ACNGT	2 cut(s)	209, 436
TaqI	TCGA	1 cut(s)	217
TasI	AATT	3 cut(s)	162, 219, 315
TatI	WGTACW	3 cut(s)	75, 332, 436
TfiI	GAWTC	1 cut(s)	310
TseI	GCWGC	1 cut(s)	176
TspDTI	ATGAA	2 cut(s)	188, 323
XceI	RCATGY	1 cut(s)	82
XmiI	GTMKAC	1 cut(s)	383
XspI	CTAG	2 cut(s)	296, 300
ZrmI	AGTACT	1 cut(s)	334
Zsp2I	ATGCAT	2 cut(s)	6, 251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.