Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004418

Physical Location & Seq

Genomic Coordinates Reverse (-)

16276610 .. 16277581

Gene Structure 972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g12770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGAGGGCCAGCAACAGTTTCTGCAAGGACAATATCATTGGGACAGGAAGAACTGGAACAATGTACAAAGCAGTGCTCGATGATGGCACTCCACTTATGGTCAAGAGGTTGCAGGAATCTCAACACTCTGAGAAAGAGTTTCTGTCTGAGATGGCTACTTTGGGAAATATAGGGCACCGGAACTTGGTTCCTCTTTTAGGTTTTTGCACGGCAAAGAGGGAAAGGCTTTTGGTCTATAGGTACATGCCTAATGGTACCCTCCACGATCAGCTACATCCTGCAGATGCTGAAGGTGCAAAGATCATGGACTGGCCAACTAGGCTTAAAATTGGGATAGGGGCAGCTAGAGGATTAGCGTGGCTCCACCATAACTGCAATCCTCGAATTATCCACCGAAACATAAGCTCCAAATGCATCTTGTTGGATGCAGATTTTGAGCCCAGAATATCTGAATTTGGGCTAGCTAGGCTCATGAATCCAATTGATACACATTTGAGTACTTTTGTGAATGGGGAGTTTGGTGATCTGGGATATGTTGCTCCCGAGTATACACGAACTCTAGTGGCCACTCCAAAGGGAGATGTTTACAGTTTCGGAACTGTACTCCTTGAGTTGGTGACTGGTGAGAGGGCTACCCACATTTCTAAAGCCCCTGAAGACTTCAAAGGAAATTTGGTGGAATGGATTATGCAACTGTCAAGTAAATCTCAACTCCTGGATGCGCTAGACAAATCTTTGGTCGGGAAGGGTGTGAATGATGAGCTTTTCCAGTTTCTTAAAGTTGCGTGCAACTGTGTAGGGCCTATTGCCAAGGAGAGGCCTACAATGTTTGAAGTATACCAGCTTCTAAGGGCCATAGGGGAGAAATATCACTTCACAGTCGAAGATGAGATGATGATGCCAACAGACAATGGCGATGGTGATGCTTCAGGCGAACTTATTGTTGCTCGAGGGATGGTTGAGATGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

324

Amino Acids

35.95

Weight (kDa)

5.95

Isoelectric Point (pI)

24.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	10 - 279	1.1e-34	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	10 - 280	1.3e-31	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48380
fragaria_vesca	FvH4_2g17440 FvH4_2g17440 FvH4_2g17440
malus_domestica	MD05G1153300.v1.1
prunus_persica	Prupe.8G186700_v2.0.a1
pyrus_communis	pycom05g14770 pycom10g12770
rosa_chinensis	RchiOBHm_Chr6g0248541 RchiOBHm_Chr6g0282151
rosa_laevigata	RLG00000012905 RLG00000015144
rosa_multiflora	Rmu_sc0002553.1_g000025 Rmu_sc0002553.1_g000026 Rmu_sc0011940.1_g000001 Rmu_sc0021471.1_g000006
rosa_roxburghii	Rroxscaffold_7G00186440 Rroxscaffold_7G00213230
rosa_rugosa	Rorug05G0532000 Rorug06G0145800
rosa_samantha	Rh6AG048900 Rh6AG258800 Rh6BG044100 Rh6BG044400 Rh6BG262100 Rh6CG041000 Rh6CG261100 Rh6DG037200 Rh6DG253100
rosa_wichuraiana	Rw6G004150 Rw6G004230 Rw6G022400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	254
AccB1I	GGYRCC	2 cut(s)	174, 254
AccI	GTMKAC	2 cut(s)	548, 837
AcoI	YGGCCR	2 cut(s)	311, 564
AcsI	RAATTY	2 cut(s)	452, 670
AcuI	CTGAAG	3 cut(s)	309, 675, 912
AfaI	GTAC	5 cut(s)	65, 242, 256, 499, 603
AfiI	CCNNNNNNNGG	4 cut(s)	184, 197, 613, 816
AgsI	TTSAA	2 cut(s)	664, 833
AjnI	CCWGG	1 cut(s)	714
AluBI	AGCT	6 cut(s)	271, 344, 405, 464, 763, 844
AluI	AGCT	6 cut(s)	271, 344, 405, 464, 763, 844
Alw21I	GWGCWC	1 cut(s)	78
AlwNI	CAGNNNCTG	2 cut(s)	21, 287
Ama87I	CYCGRG	2 cut(s)	542, 948
AoxI	GGCC	6 cut(s)	6, 311, 564, 800, 818, 852
ApeKI	GCWGC	1 cut(s)	341
ApoI	RAATTY	2 cut(s)	452, 670
ArsI	GACNNNNNNTTYG	2 cut(s)	723, 755
Asp718I	GGTACC	1 cut(s)	254
AspLEI	GCGC	1 cut(s)	724
AspS9I	GGNCC	3 cut(s)	6, 800, 852
AsuHPI	GGTGA	4 cut(s)	533, 628, 635, 932
AsuNHI	GCTAGC	1 cut(s)	460
AvaI	CYCGRG	2 cut(s)	542, 948
BaeGI	GKGCMC	1 cut(s)	177
BalI	TGGCCA	2 cut(s)	313, 566
BanI	GGYRCC	2 cut(s)	174, 254
BanII	GRGCYC	1 cut(s)	441
BarI	GAAGNNNNNNTAC	2 cut(s)	828, 860
BbsI	GAAGAC	1 cut(s)	663
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	1 cut(s)	353
BccI	CCATC	4 cut(s)	77, 145, 911, 949
BceAI	ACGGC	1 cut(s)	225
BcgI	CGANNNNNNTGC	2 cut(s)	905, 939
BciT130I	CCWGG	1 cut(s)	716
BfaI	CTAG	6 cut(s)	318, 345, 461, 465, 560, 725
BfmI	CTRYAG	2 cut(s)	235, 279
BglI	GCCNNNNNGGC	1 cut(s)	319
BisI	GCNGC	1 cut(s)	342
BlsI	GCNGC	1 cut(s)	343
BmcAI	AGTACT	1 cut(s)	499
Bme1390I	CCNGG	1 cut(s)	716
BmeT110I	CYCGRG	2 cut(s)	542, 948
BmgT120I	GGNCC	3 cut(s)	6, 800, 852
BmiI	GGNNCC	4 cut(s)	176, 189, 256, 362
BmrFI	CCNGG	1 cut(s)	716
BmsI	GCATC	6 cut(s)	274, 415, 423, 709, 888, 913
BmtI	GCTAGC	1 cut(s)	464
BpiI	GAAGAC	1 cut(s)	663
BpuEI	CTTGAG	1 cut(s)	629
BsaJI	CCNNGG	1 cut(s)	810
BsaWI	WCCGGW	1 cut(s)	177
BsaXI	ACNNNNNCTCC	2 cut(s)	389, 419
Bsc4I	CCNNNNNNNGG	4 cut(s)	184, 197, 613, 816
Bse1I	ACTGG	4 cut(s)	58, 314, 625, 769
BseBI	CCWGG	1 cut(s)	716
BseDI	CCNNGG	1 cut(s)	810
BseGI	GGATG	4 cut(s)	274, 430, 724, 960
BseLI	CCNNNNNNNGG	4 cut(s)	184, 197, 613, 816
BseMII	CTCAG	2 cut(s)	120, 138
BseNI	ACTGG	4 cut(s)	58, 314, 625, 769
BseSI	GKGCMC	1 cut(s)	177
BseXI	GCAGC	1 cut(s)	353
BshFI	GGCC	6 cut(s)	8, 313, 566, 802, 820, 854
BshNI	GGYRCC	2 cut(s)	174, 254
BsiHKAI	GWGCWC	1 cut(s)	78
BsiHKCI	CYCGRG	2 cut(s)	542, 948
BsiSI	CCGG	1 cut(s)	178
BslFI	GGGAC	1 cut(s)	55
BslI	CCNNNNNNNGG	4 cut(s)	184, 197, 613, 816
BsmFI	GGGAC	1 cut(s)	55
BsnI	GGCC	6 cut(s)	8, 313, 566, 802, 820, 854
BsoBI	CYCGRG	2 cut(s)	542, 948
Bsp1286I	GDGCHC	3 cut(s)	78, 177, 441
Bsp1407I	TGTACA	1 cut(s)	63
Bsp143I	GATC	3 cut(s)	265, 300, 523
BspANI	GGCC	6 cut(s)	8, 313, 566, 802, 820, 854
BspCNI	CTCAG	2 cut(s)	121, 139
BspHI	TCATGA	1 cut(s)	471
BspLI	GGNNCC	4 cut(s)	176, 189, 256, 362
BspMAI	CTGCAG	1 cut(s)	283
BspOI	GCTAGC	1 cut(s)	464
BspT107I	GGYRCC	2 cut(s)	174, 254
BsrGI	TGTACA	1 cut(s)	63
BsrI	ACTGG	4 cut(s)	58, 314, 625, 769
BssECI	CCNNGG	1 cut(s)	810
BssMI	GATC	3 cut(s)	265, 300, 523
BssNAI	GTATAC	2 cut(s)	549, 838
BssT1I	CCWWGG	1 cut(s)	810
Bst1107I	GTATAC	2 cut(s)	549, 838
Bst2UI	CCWGG	1 cut(s)	716
Bst4CI	ACNGT	6 cut(s)	17, 590, 601, 696, 794, 880
BstAUI	TGTACA	1 cut(s)	63
BstC8I	GCNNGC	3 cut(s)	10, 462, 787
BstDEI	CTNAG	3 cut(s)	129, 147, 848
BstENI	CCTNNNNNAGG	1 cut(s)	195
BstF5I	GGATG	4 cut(s)	274, 430, 724, 960
BstHHI	GCGC	1 cut(s)	724
BstKTI	GATC	3 cut(s)	268, 303, 526
BstMBI	GATC	3 cut(s)	265, 300, 523
BstMWI	GCNNNNNNNGC	4 cut(s)	293, 319, 411, 466
BstNI	CCWGG	1 cut(s)	716
BstNSI	RCATGY	1 cut(s)	247
BstSCI	CCNGG	1 cut(s)	714
BstSFI	CTRYAG	2 cut(s)	235, 279
BstSLI	GKGCMC	1 cut(s)	177
BstV1I	GCAGC	1 cut(s)	353
BstV2I	GAAGAC	1 cut(s)	663
BstZ17I	GTATAC	2 cut(s)	549, 838
BsuRI	GGCC	6 cut(s)	8, 313, 566, 802, 820, 854
BtgZI	GCGATG	1 cut(s)	930
BtsCI	GGATG	4 cut(s)	274, 430, 724, 960
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	3 cut(s)	10, 462, 787
CaiI	CAGNNNCTG	2 cut(s)	21, 287
CciI	TCATGA	1 cut(s)	471
CfoI	GCGC	1 cut(s)	724
Cfr13I	GGNCC	3 cut(s)	6, 800, 852
Csp6I	GTAC	5 cut(s)	64, 241, 255, 498, 602
CviAII	CATG	3 cut(s)	244, 304, 472
CviQI	GTAC	5 cut(s)	64, 241, 255, 498, 602
DdeI	CTNAG	3 cut(s)	129, 147, 848
DpnI	GATC	3 cut(s)	267, 302, 525
DpnII	GATC	3 cut(s)	265, 300, 523
EaeI	YGGCCR	2 cut(s)	311, 564
Eco130I	CCWWGG	1 cut(s)	810
Eco147I	AGGCCT	1 cut(s)	820
Eco24I	GRGCYC	1 cut(s)	441
Eco57I	CTGAAG	3 cut(s)	309, 675, 912
Eco88I	CYCGRG	2 cut(s)	542, 948
EcoNI	CCTNNNNNAGG	1 cut(s)	195
EcoO109I	RGGNCCY	1 cut(s)	800
EcoRII	CCWGG	1 cut(s)	714
EcoT14I	CCWWGG	1 cut(s)	810
EcoT22I	ATGCAT	1 cut(s)	416
EcoT38I	GRGCYC	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	810
FaeI	CATG	3 cut(s)	247, 307, 475
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	3 cut(s)	243, 303, 471
FblI	GTMKAC	2 cut(s)	548, 837
Fnu4HI	GCNGC	1 cut(s)	342
FokI	GGATG	4 cut(s)	261, 437, 731, 967
FriOI	GRGCYC	1 cut(s)	441
Fsp4HI	GCNGC	1 cut(s)	342
FspBI	CTAG	6 cut(s)	318, 345, 461, 465, 560, 725
GlaI	GCGC	1 cut(s)	723
GluI	GCNGC	1 cut(s)	342
HaeIII	GGCC	6 cut(s)	8, 313, 566, 802, 820, 854
HapII	CCGG	1 cut(s)	178
HhaI	GCGC	1 cut(s)	724
Hin1II	CATG	3 cut(s)	247, 307, 475
Hin6I	GCGC	1 cut(s)	722
HinP1I	GCGC	1 cut(s)	722
HinfI	GANTC	2 cut(s)	116, 475
HpaII	CCGG	1 cut(s)	178
HphI	GGTGA	4 cut(s)	533, 628, 635, 932
Hpy166II	GTNNAC	3 cut(s)	549, 586, 838
Hpy188I	TCNGA	4 cut(s)	130, 148, 451, 596
Hpy188III	TCNNGA	4 cut(s)	103, 472, 542, 742
Hpy8I	GTNNAC	3 cut(s)	549, 586, 838
HpyAV	CCTTC	2 cut(s)	284, 739
HpyCH4III	ACNGT	6 cut(s)	17, 590, 601, 696, 794, 880
HpyF10VI	GCNNNNNNNGC	4 cut(s)	293, 319, 411, 466
HpyF3I	CTNAG	3 cut(s)	129, 147, 848
Hsp92II	CATG	3 cut(s)	247, 307, 475
HspAI	GCGC	1 cut(s)	722
KpnI	GGTACC	1 cut(s)	258
Kzo9I	GATC	3 cut(s)	265, 300, 523
LmnI	GCTCC	3 cut(s)	366, 410, 544
Lsp1109I	GCAGC	1 cut(s)	353
LweI	GCATC	6 cut(s)	274, 415, 423, 709, 888, 913
MaeI	CTAG	6 cut(s)	318, 345, 461, 465, 560, 725
MaeIII	GTNAC	1 cut(s)	616
MalI	GATC	3 cut(s)	267, 302, 525
MboI	GATC	3 cut(s)	265, 300, 523
MboII	GAAGA	3 cut(s)	60, 668, 896
MfeI	CAATTG	1 cut(s)	480
MhlI	GDGCHC	3 cut(s)	78, 177, 441
MlsI	TGGCCA	2 cut(s)	313, 566
MluCI	AATT	5 cut(s)	327, 384, 452, 480, 670
MluNI	TGGCCA	2 cut(s)	313, 566
MmeI	TCCRAC	1 cut(s)	402
MnlI	CCTC	9 cut(s)	99, 201, 210, 269, 341, 390, 621, 810, 944
Mox20I	TGGCCA	2 cut(s)	313, 566
Mph1103I	ATGCAT	1 cut(s)	416
MscI	TGGCCA	2 cut(s)	313, 566
MseI	TTAA	2 cut(s)	324, 777
Msp20I	TGGCCA	2 cut(s)	313, 566
MspI	CCGG	1 cut(s)	178
MspR9I	CCNGG	1 cut(s)	716
MunI	CAATTG	1 cut(s)	480
MvaI	CCWGG	1 cut(s)	716
MwoI	GCNNNNNNNGC	4 cut(s)	293, 319, 411, 466
NdeII	GATC	3 cut(s)	265, 300, 523
NheI	GCTAGC	1 cut(s)	460
NlaIII	CATG	3 cut(s)	247, 307, 475
NlaIV	GGNNCC	4 cut(s)	176, 189, 256, 362
NmuCI	GTSAC	1 cut(s)	616
NsiI	ATGCAT	1 cut(s)	416
NspI	RCATGY	1 cut(s)	247
PaeR7I	CTCGAG	1 cut(s)	948
PagI	TCATGA	1 cut(s)	471
PceI	AGGCCT	1 cut(s)	820
PfeI	GAWTC	2 cut(s)	116, 475
PfoI	TCCNGGA	1 cut(s)	714
PkrI	GCNGC	1 cut(s)	343
Psp6I	CCWGG	1 cut(s)	714
PspGI	CCWGG	1 cut(s)	714
PspN4I	GGNNCC	4 cut(s)	176, 189, 256, 362
PspPI	GGNCC	3 cut(s)	6, 800, 852
PspXI	VCTCGAGB	1 cut(s)	948
PstI	CTGCAG	1 cut(s)	283
PstNI	CAGNNNCTG	2 cut(s)	21, 287
RsaI	GTAC	5 cut(s)	65, 242, 256, 499, 603
RsaNI	GTAC	5 cut(s)	64, 241, 255, 498, 602
SaqAI	TTAA	2 cut(s)	324, 777
SatI	GCNGC	1 cut(s)	342
Sau3AI	GATC	3 cut(s)	265, 300, 523
Sau96I	GGNCC	3 cut(s)	6, 800, 852
ScaI	AGTACT	1 cut(s)	499
ScrFI	CCNGG	1 cut(s)	716
SduI	GDGCHC	3 cut(s)	78, 177, 441
SfaNI	GCATC	6 cut(s)	274, 415, 423, 709, 888, 913
SfcI	CTRYAG	2 cut(s)	235, 279
Sfr274I	CTCGAG	1 cut(s)	948
SlaI	CTCGAG	1 cut(s)	948
SmlI	CTYRAG	2 cut(s)	608, 948
SmoI	CTYRAG	2 cut(s)	608, 948
Sse9I	AATT	5 cut(s)	327, 384, 452, 480, 670
SseBI	AGGCCT	1 cut(s)	820
SspMI	CTAG	6 cut(s)	318, 345, 461, 465, 560, 725
StuI	AGGCCT	1 cut(s)	820
StyD4I	CCNGG	1 cut(s)	714
StyI	CCWWGG	1 cut(s)	810
TaaI	ACNGT	6 cut(s)	17, 590, 601, 696, 794, 880
TaqI	TCGA	4 cut(s)	78, 382, 882, 949
TasI	AATT	5 cut(s)	327, 384, 452, 480, 670
TatI	WGTACW	3 cut(s)	63, 497, 601
TfiI	GAWTC	2 cut(s)	116, 475
Tru1I	TTAA	2 cut(s)	324, 777
Tru9I	TTAA	2 cut(s)	324, 777
TscAI	CASTG	1 cut(s)	78
TseFI	GTSAC	1 cut(s)	616
TseI	GCWGC	1 cut(s)	341
Tsp45I	GTSAC	1 cut(s)	616
TspDTI	ATGAA	1 cut(s)	488
TspRI	CASTG	1 cut(s)	78
XagI	CCTNNNNNAGG	1 cut(s)	195
XapI	RAATTY	2 cut(s)	452, 670
XceI	RCATGY	1 cut(s)	247
XhoI	CTCGAG	1 cut(s)	948
XmiI	GTMKAC	2 cut(s)	548, 837
XspI	CTAG	6 cut(s)	318, 345, 461, 465, 560, 725
ZrmI	AGTACT	1 cut(s)	499
Zsp2I	ATGCAT	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.