Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004418

Physical Location & Seq

Genomic Coordinates Forward (+)

7071619 .. 7072578

Gene Structure 960 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG044400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCACAATCAATTCGGACACCTGGACTTTGTGGTGCTCCTTTGGAAAGTTTCCAGGCAGCTGCAAAGAAGTCCAACAGTGTAGTTATAGTGGCAGCAGGTGTAGGGGGTGCAACTTTTGCGGCATTAGTTGTGATTATTGGTTTGTTCTTCTTCATGCATAGAGTGTCTGCAAGGAAGAAGGAAGAGGACCCTGAAGGCAACAAATGGGCAACGAGTTTGAAGGGAACTAAAGGAATCAAGGTTTCCATGTTCAAGAAGTCGGTTCCTAAAATGAGACTGAGTGATCTCATGAAGGCTACCAACGATTTCAGCAAAGACAATATCATTGGCTCAAGAAGAACTGGAACTGTTTACAAGGCAGTGCTTGATGATGGCACCTCACTTATGGTCAAGAGGCTGCAGGAATCTCAACACTCTGAGAAGGAGTTTCTGTCTGAGATGTCTACTCTGGGTAGTGTAGAACACCGTAACTTGGTTCCCCTTTTGGGTTTTTGTGTGGCAAAGAAGGAAATGCTTTTGGAGTATAAGAACATGCCTCATGGTACCCTCCATGACCAGCTACATCCTGTGGAAGCTGATGGTACCAAGATTATGGACTGGCCTACAAGGCTAAAAATTGGGATAGGAGCAGCCAGAGGATTAGCGTGGCTCCATCATAACTGTAATCCTCGAATTATCCACCGAAATAAGCTCCAAATGGATGCAGATTTTGAGCCGAAGATTTCTGATTTTGGCCTTGCTAGGCTCTTGAATCCAATTGATACACATTTGAGTACTTTTGTGAATGGGGAGTTTGGAGATCTGGGTTATGTGGCTCCTGAGTATACAAGAACTTTAGTGGCCACTCCCAAGGGGGATGTTTACAGCTTTGGAACTGTTCTTCTTGAGTTAATTACTGGTGAAAGAGCTACCCGTATTTCTAAAGCTCCAGAAGATTTCAAAGGAAACTTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

319

Amino Acids

35.11

Weight (kDa)

9.28

Isoelectric Point (pI)

25.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	105 - 308	3.9e-24	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	107 - 303	4.7e-27	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48380
fragaria_vesca	FvH4_2g17440 FvH4_2g17440 FvH4_2g17440
malus_domestica	MD05G1153300.v1.1
prunus_persica	Prupe.8G186700_v2.0.a1
pyrus_communis	pycom05g14770 pycom10g12770
rosa_chinensis	RchiOBHm_Chr6g0248541 RchiOBHm_Chr6g0282151
rosa_laevigata	RLG00000012905 RLG00000015144
rosa_multiflora	Rmu_sc0002553.1_g000025 Rmu_sc0002553.1_g000026 Rmu_sc0011940.1_g000001 Rmu_sc0021471.1_g000006
rosa_roxburghii	Rroxscaffold_7G00186440 Rroxscaffold_7G00213230
rosa_rugosa	Rorug05G0532000 Rorug06G0145800
rosa_samantha	Rh6AG048900 Rh6AG258800 Rh6BG044100 Rh6BG044400 Rh6BG262100 Rh6CG041000 Rh6CG261100 Rh6DG037200 Rh6DG253100
rosa_wichuraiana	Rw6G004150 Rw6G004230 Rw6G022400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	89
Acc36I	ACCTGC	1 cut(s)	89
Acc65I	GGTACC	2 cut(s)	545, 584
AccB1I	GGYRCC	3 cut(s)	377, 545, 584
AccI	GTMKAC	2 cut(s)	446, 827
AciI	CCGC	1 cut(s)	122
AcoI	YGGCCR	1 cut(s)	843
AcuI	CTGAAG	1 cut(s)	216
AfaI	GTAC	3 cut(s)	547, 586, 778
AfiI	CCNNNNNNNGG	2 cut(s)	475, 488
AgsI	TTSAA	4 cut(s)	223, 256, 754, 943
AjnI	CCWGG	2 cut(s)	22, 54
AluBI	AGCT	7 cut(s)	62, 562, 578, 694, 870, 911, 929
AluI	AGCT	7 cut(s)	62, 562, 578, 694, 870, 911, 929
Alw21I	GWGCWC	1 cut(s)	40
Alw26I	GTCTC	1 cut(s)	271
AoxI	GGCC	3 cut(s)	602, 736, 843
ApeKI	GCWGC	5 cut(s)	59, 62, 95, 400, 632
Asp718I	GGTACC	2 cut(s)	545, 584
AspS9I	GGNCC	1 cut(s)	190
AsuHPI	GGTGA	1 cut(s)	914
AvaII	GGWCC	1 cut(s)	190
BalI	TGGCCA	1 cut(s)	845
BanI	GGYRCC	3 cut(s)	377, 545, 584
Bbv12I	GWGCWC	1 cut(s)	40
BbvI	GCAGC	5 cut(s)	49, 71, 107, 387, 644
BccI	CCATC	3 cut(s)	368, 575, 663
BciT130I	CCWGG	2 cut(s)	24, 56
BcoDI	GTCTC	1 cut(s)	271
BfaI	CTAG	1 cut(s)	744
BfmI	CTRYAG	1 cut(s)	401
BfuAI	ACCTGC	1 cut(s)	89
BglI	GCCNNNNNGGC	1 cut(s)	610
BglII	AGATCT	1 cut(s)	802
BisI	GCNGC	6 cut(s)	60, 63, 96, 123, 401, 633
BlsI	GCNGC	6 cut(s)	61, 64, 97, 124, 402, 634
BmcAI	AGTACT	1 cut(s)	778
Bme1390I	CCNGG	2 cut(s)	24, 56
Bme18I	GGWCC	1 cut(s)	190
BmgT120I	GGNCC	1 cut(s)	190
BmiI	GGNNCC	8 cut(s)	192, 267, 379, 480, 547, 586, 653, 819
BmrFI	CCNGG	2 cut(s)	24, 56
BmsI	GCATC	1 cut(s)	694
BpmI	CTGGAG	1 cut(s)	915
BpuEI	CTTGAG	2 cut(s)	319, 908
BsaJI	CCNNGG	1 cut(s)	852
BsaXI	ACNNNNNCTCC	2 cut(s)	419, 449
Bsc4I	CCNNNNNNNGG	2 cut(s)	475, 488
Bse1I	ACTGG	3 cut(s)	349, 605, 904
BseBI	CCWGG	2 cut(s)	24, 56
BseDI	CCNNGG	1 cut(s)	852
BseGI	GGATG	3 cut(s)	565, 709, 865
BseLI	CCNNNNNNNGG	2 cut(s)	475, 488
BseMII	CTCAG	4 cut(s)	272, 411, 429, 813
BseNI	ACTGG	3 cut(s)	349, 605, 904
BseXI	GCAGC	5 cut(s)	49, 71, 107, 387, 644
BshFI	GGCC	3 cut(s)	604, 738, 845
BshNI	GGYRCC	3 cut(s)	377, 545, 584
BsiHKAI	GWGCWC	1 cut(s)	40
BslI	CCNNNNNNNGG	2 cut(s)	475, 488
BsmAI	GTCTC	1 cut(s)	271
BsnI	GGCC	3 cut(s)	604, 738, 845
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp143I	GATC	2 cut(s)	286, 802
BspACI	CCGC	1 cut(s)	122
BspANI	GGCC	3 cut(s)	604, 738, 845
BspCNI	CTCAG	4 cut(s)	273, 412, 430, 814
BspHI	TCATGA	1 cut(s)	291
BspLI	GGNNCC	8 cut(s)	192, 267, 379, 480, 547, 586, 653, 819
BspMAI	CTGCAG	1 cut(s)	405
BspMI	ACCTGC	1 cut(s)	89
BspT107I	GGYRCC	3 cut(s)	377, 545, 584
BsrI	ACTGG	3 cut(s)	349, 605, 904
BssECI	CCNNGG	1 cut(s)	852
BssMI	GATC	2 cut(s)	286, 802
BssNAI	GTATAC	1 cut(s)	828
BssT1I	CCWWGG	1 cut(s)	852
Bst1107I	GTATAC	1 cut(s)	828
Bst2UI	CCWGG	2 cut(s)	24, 56
Bst4CI	ACNGT	5 cut(s)	80, 352, 470, 665, 880
Bst6I	CTCTTC	1 cut(s)	180
BstAPI	GCANNNNNTGC	1 cut(s)	119
BstDEI	CTNAG	4 cut(s)	281, 420, 438, 822
BstF5I	GGATG	3 cut(s)	565, 709, 865
BstKTI	GATC	2 cut(s)	289, 805
BstMAI	GTCTC	1 cut(s)	271
BstMBI	GATC	2 cut(s)	286, 802
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 610
BstNI	CCWGG	2 cut(s)	24, 56
BstNSI	RCATGY	1 cut(s)	538
BstSCI	CCNGG	2 cut(s)	22, 54
BstSFI	CTRYAG	1 cut(s)	401
BstV1I	GCAGC	5 cut(s)	49, 71, 107, 387, 644
BstX2I	RGATCY	1 cut(s)	802
BstXI	CCANNNNNNTGG	1 cut(s)	595
BstYI	RGATCY	1 cut(s)	802
BstZ17I	GTATAC	1 cut(s)	828
BsuRI	GGCC	3 cut(s)	604, 738, 845
BtsCI	GGATG	3 cut(s)	565, 709, 865
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	2 cut(s)	85, 369
BveI	ACCTGC	1 cut(s)	89
CciI	TCATGA	1 cut(s)	291
Cfr13I	GGNCC	1 cut(s)	190
Csp6I	GTAC	3 cut(s)	546, 585, 777
CviAII	CATG	6 cut(s)	157, 250, 292, 535, 542, 554
CviQI	GTAC	3 cut(s)	546, 585, 777
DdeI	CTNAG	4 cut(s)	281, 420, 438, 822
DpnI	GATC	2 cut(s)	288, 804
DpnII	GATC	2 cut(s)	286, 802
EaeI	YGGCCR	1 cut(s)	843
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	852
Eco47I	GGWCC	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	216
EcoO109I	RGGNCCY	1 cut(s)	190
EcoRII	CCWGG	2 cut(s)	22, 54
EcoT14I	CCWWGG	1 cut(s)	852
EcoT22I	ATGCAT	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	852
FaeI	CATG	6 cut(s)	160, 253, 295, 538, 545, 557
FatI	CATG	6 cut(s)	156, 249, 291, 534, 541, 553
FblI	GTMKAC	2 cut(s)	446, 827
Fnu4HI	GCNGC	6 cut(s)	60, 63, 96, 123, 401, 633
FokI	GGATG	3 cut(s)	552, 716, 872
Fsp4HI	GCNGC	6 cut(s)	60, 63, 96, 123, 401, 633
FspBI	CTAG	1 cut(s)	744
GluI	GCNGC	6 cut(s)	60, 63, 96, 123, 401, 633
GsuI	CTGGAG	1 cut(s)	915
HaeIII	GGCC	3 cut(s)	604, 738, 845
Hin1II	CATG	6 cut(s)	160, 253, 295, 538, 545, 557
HinfI	GANTC	3 cut(s)	237, 407, 754
HphI	GGTGA	1 cut(s)	914
Hpy166II	GTNNAC	4 cut(s)	355, 447, 828, 865
Hpy188I	TCNGA	4 cut(s)	18, 421, 439, 730
Hpy188III	TCNNGA	8 cut(s)	256, 292, 336, 394, 751, 821, 887, 932
Hpy8I	GTNNAC	4 cut(s)	355, 447, 828, 865
HpyAV	CCTTC	6 cut(s)	175, 191, 217, 289, 418, 502
HpyCH4III	ACNGT	5 cut(s)	80, 352, 470, 665, 880
HpyCH4V	TGCA	6 cut(s)	65, 113, 160, 173, 403, 707
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 610
HpyF3I	CTNAG	4 cut(s)	281, 420, 438, 822
Hsp92II	CATG	6 cut(s)	160, 253, 295, 538, 545, 557
KpnI	GGTACC	2 cut(s)	549, 588
Kzo9I	GATC	2 cut(s)	286, 802
LmnI	GCTCC	6 cut(s)	43, 629, 657, 699, 823, 934
Lsp1109I	GCAGC	5 cut(s)	49, 71, 107, 387, 644
LweI	GCATC	1 cut(s)	694
MaeI	CTAG	1 cut(s)	744
MaeIII	GTNAC	1 cut(s)	470
MalI	GATC	2 cut(s)	288, 804
MboI	GATC	2 cut(s)	286, 802
MboII	GAAGA	8 cut(s)	142, 145, 190, 197, 351, 733, 875, 947
MfeI	CAATTG	1 cut(s)	759
MflI	RGATCY	1 cut(s)	802
MhlI	GDGCHC	1 cut(s)	40
MlsI	TGGCCA	1 cut(s)	845
MluCI	AATT	5 cut(s)	12, 618, 675, 759, 894
MluNI	TGGCCA	1 cut(s)	845
MmeI	TCCRAC	1 cut(s)	99
MnlI	CCTC	7 cut(s)	181, 390, 391, 549, 560, 632, 681
Mox20I	TGGCCA	1 cut(s)	845
Mph1103I	ATGCAT	1 cut(s)	162
MscI	TGGCCA	1 cut(s)	845
MseI	TTAA	2 cut(s)	893, 958
Msp20I	TGGCCA	1 cut(s)	845
MspA1I	CMGCKG	1 cut(s)	62
MspR9I	CCNGG	2 cut(s)	24, 56
MunI	CAATTG	1 cut(s)	759
MvaI	CCWGG	2 cut(s)	24, 56
MwoI	GCNNNNNNNGC	2 cut(s)	119, 610
NdeII	GATC	2 cut(s)	286, 802
NlaIII	CATG	6 cut(s)	160, 253, 295, 538, 545, 557
NlaIV	GGNNCC	8 cut(s)	192, 267, 379, 480, 547, 586, 653, 819
NsiI	ATGCAT	1 cut(s)	162
NspI	RCATGY	1 cut(s)	538
PagI	TCATGA	1 cut(s)	291
PaqCI	CACCTGC	1 cut(s)	89
PfeI	GAWTC	3 cut(s)	237, 407, 754
PkrI	GCNGC	6 cut(s)	61, 64, 97, 124, 402, 634
PpuMI	RGGWCCY	1 cut(s)	190
Psp5II	RGGWCCY	1 cut(s)	190
Psp6I	CCWGG	2 cut(s)	22, 54
PspGI	CCWGG	2 cut(s)	22, 54
PspN4I	GGNNCC	8 cut(s)	192, 267, 379, 480, 547, 586, 653, 819
PspPI	GGNCC	1 cut(s)	190
PspPPI	RGGWCCY	1 cut(s)	190
PstI	CTGCAG	1 cut(s)	405
PsuI	RGATCY	1 cut(s)	802
PvuII	CAGCTG	1 cut(s)	62
RsaI	GTAC	3 cut(s)	547, 586, 778
RsaNI	GTAC	3 cut(s)	546, 585, 777
SaqAI	TTAA	2 cut(s)	893, 958
SatI	GCNGC	6 cut(s)	60, 63, 96, 123, 401, 633
Sau3AI	GATC	2 cut(s)	286, 802
Sau96I	GGNCC	1 cut(s)	190
ScaI	AGTACT	1 cut(s)	778
ScrFI	CCNGG	2 cut(s)	24, 56
SduI	GDGCHC	1 cut(s)	40
SfaNI	GCATC	1 cut(s)	694
SfcI	CTRYAG	1 cut(s)	401
SinI	GGWCC	1 cut(s)	190
SmlI	CTYRAG	2 cut(s)	334, 887
SmoI	CTYRAG	2 cut(s)	334, 887
Sse9I	AATT	5 cut(s)	12, 618, 675, 759, 894
SsiI	CCGC	1 cut(s)	122
SspMI	CTAG	1 cut(s)	744
StyD4I	CCNGG	2 cut(s)	22, 54
StyI	CCWWGG	1 cut(s)	852
TaaI	ACNGT	5 cut(s)	80, 352, 470, 665, 880
TaqI	TCGA	1 cut(s)	673
TasI	AATT	5 cut(s)	12, 618, 675, 759, 894
TatI	WGTACW	1 cut(s)	776
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	3 cut(s)	237, 407, 754
Tru1I	TTAA	2 cut(s)	893, 958
Tru9I	TTAA	2 cut(s)	893, 958
TscAI	CASTG	2 cut(s)	85, 369
TseI	GCWGC	5 cut(s)	59, 62, 95, 400, 632
TspDTI	ATGAA	2 cut(s)	145, 308
TspRI	CASTG	2 cut(s)	85, 369
VpaK11BI	GGWCC	1 cut(s)	190
XceI	RCATGY	1 cut(s)	538
XmiI	GTMKAC	2 cut(s)	446, 827
XspI	CTAG	1 cut(s)	744
ZrmI	AGTACT	1 cut(s)	778
Zsp2I	ATGCAT	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.