Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004418

Physical Location & Seq

Genomic Coordinates Reverse (-)

18324595 .. 18325584

Gene Structure 990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g14770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGAAGCTGAGTGATCTCATGAGGGCCAGCAACAGTTTCTGCAAAGACAATATCATTGGGACAGGAAGAACTGGAACGATGTACAAAGCAGTTCTCGATGATGGCACTCCACTTATGGTCAAGAGGTTGCAGGAATCTCAACATTCTGAGAAAGAATTTCTGTCTGAGATGACTACTTTGGGAAATATAGGGCACCGTAATTTGGTTCCTCTTTTAGGTTTTTGCACGGCAAAGAGGGAAAGGCTATTGGTCTATAGGTACATGCCTAATGGTACCCTCCACGATCAGCTACATCCTGCAGATGCTGAAGGTGCAAAGATTATGGACTGGCCAACTAGGCTAAAAATTGGGATAGGGGCAGCCAGAGGATTAGCATGGCTCCACCATAACTGCAATCCTCGAATTATCCACCGAAACATAAGTTCCAAATGCATCTTACTGGATGCAGATTTTGAGCCCAGAATATCTGAATTTGGGCTAGCTAGGCTCATGAATCCAATTGATACACATTTGAGTACGTTTGTGAATGGGGAGTTTGGGGATCTGGGATATGTTGCTCCCGAGTATGCACGAACTCTAGTGGCCACTCCAAAGGGAGATGTTTACAGTTTCGGAACTGTACTTCTTGAGTTGGTGACCGGTGAGAGAGCTACCCACATTTCTAAAGCCCCTGAAGACTTCAAAGGAAATTTGGTGGAATGGATTACACAGCTGTCAGGCAAAGCTCAACTCCAGGATGCGCTCGACAAATCTTTGGTTGGGAAGGGTGTGAATGAGGAGCTTTTCCAGTTTCTTAAAGTTGCGTGCAACTGTGTGGGGCCTATTGCTAAGGAGAGGCCTACTATGTTTGAAGTGTACCAGCTTCTAAGGGCCATAGGTGAGAAATATAACTTCACAATCGAAGACGACATGATGATGCCGACAGACAATGGCGATGGTGATGGTAATGGCGAACTTATTGTTGCTCGAGAGATGATTGAGATGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

330

Amino Acids

36.67

Weight (kDa)

5.76

Isoelectric Point (pI)

27.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	16 - 217	2.8e-34	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	16 - 286	2.1e-31	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48380
fragaria_vesca	FvH4_2g17440 FvH4_2g17440 FvH4_2g17440
malus_domestica	MD05G1153300.v1.1
prunus_persica	Prupe.8G186700_v2.0.a1
pyrus_communis	pycom05g14770 pycom10g12770
rosa_chinensis	RchiOBHm_Chr6g0248541 RchiOBHm_Chr6g0282151
rosa_laevigata	RLG00000012905 RLG00000015144
rosa_multiflora	Rmu_sc0002553.1_g000025 Rmu_sc0002553.1_g000026 Rmu_sc0011940.1_g000001 Rmu_sc0021471.1_g000006
rosa_roxburghii	Rroxscaffold_7G00186440 Rroxscaffold_7G00213230
rosa_rugosa	Rorug05G0532000 Rorug06G0145800
rosa_samantha	Rh6AG048900 Rh6AG258800 Rh6BG044100 Rh6BG044400 Rh6BG262100 Rh6CG041000 Rh6CG261100 Rh6DG037200 Rh6DG253100
rosa_wichuraiana	Rw6G004150 Rw6G004230 Rw6G022400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	272
AccB1I	GGYRCC	2 cut(s)	192, 272
AclWI	GGATC	1 cut(s)	549
AcoI	YGGCCR	2 cut(s)	329, 582
AcsI	RAATTY	3 cut(s)	155, 470, 688
AcuI	CTGAAG	2 cut(s)	327, 693
AfaI	GTAC	6 cut(s)	83, 260, 274, 517, 621, 857
AfiI	CCNNNNNNNGG	2 cut(s)	202, 215
AgeI	ACCGGT	1 cut(s)	638
AgsI	TTSAA	2 cut(s)	682, 851
AjnI	CCWGG	1 cut(s)	732
AluBI	AGCT	8 cut(s)	7, 289, 482, 650, 712, 725, 781, 862
AluI	AGCT	8 cut(s)	7, 289, 482, 650, 712, 725, 781, 862
AlwI	GGATC	1 cut(s)	549
AlwNI	CAGNNNCTG	2 cut(s)	39, 305
Ama87I	CYCGRG	2 cut(s)	560, 966
AoxI	GGCC	6 cut(s)	24, 329, 582, 818, 836, 870
ApeKI	GCWGC	1 cut(s)	359
ApoI	RAATTY	3 cut(s)	155, 470, 688
AsiGI	ACCGGT	1 cut(s)	638
Asp718I	GGTACC	1 cut(s)	272
AspLEI	GCGC	1 cut(s)	742
AspS9I	GGNCC	3 cut(s)	24, 818, 870
AsuHPI	GGTGA	4 cut(s)	646, 653, 890, 950
AsuNHI	GCTAGC	1 cut(s)	478
AvaI	CYCGRG	2 cut(s)	560, 966
BaeGI	GKGCMC	1 cut(s)	195
BalI	TGGCCA	2 cut(s)	331, 584
BanI	GGYRCC	2 cut(s)	192, 272
BanII	GRGCYC	1 cut(s)	459
BbsI	GAAGAC	2 cut(s)	681, 909
BbvI	GCAGC	1 cut(s)	371
BccI	CCATC	3 cut(s)	95, 929, 935
BceAI	ACGGC	1 cut(s)	243
BciT130I	CCWGG	1 cut(s)	734
BfaI	CTAG	4 cut(s)	336, 479, 483, 578
BfmI	CTRYAG	2 cut(s)	253, 297
BglI	GCCNNNNNGGC	1 cut(s)	337
BisI	GCNGC	1 cut(s)	360
BlsI	GCNGC	1 cut(s)	361
Bme1390I	CCNGG	1 cut(s)	734
BmeT110I	CYCGRG	2 cut(s)	560, 966
BmgT120I	GGNCC	3 cut(s)	24, 818, 870
BmiI	GGNNCC	5 cut(s)	194, 207, 274, 380, 819
BmrFI	CCNGG	1 cut(s)	734
BmsI	GCATC	5 cut(s)	292, 433, 441, 727, 906
BmtI	GCTAGC	1 cut(s)	482
BpiI	GAAGAC	2 cut(s)	681, 909
BpmI	CTGGAG	1 cut(s)	716
Bpu10I	CCTNAGC	1 cut(s)	828
BpuEI	CTTGAG	1 cut(s)	647
BsaWI	WCCGGW	1 cut(s)	638
Bsc4I	CCNNNNNNNGG	2 cut(s)	202, 215
Bse118I	RCCGGY	1 cut(s)	638
Bse1I	ACTGG	4 cut(s)	76, 332, 444, 787
BseBI	CCWGG	1 cut(s)	734
BseGI	GGATG	3 cut(s)	292, 448, 742
BseLI	CCNNNNNNNGG	2 cut(s)	202, 215
BseMII	CTCAG	2 cut(s)	138, 156
BseNI	ACTGG	4 cut(s)	76, 332, 444, 787
BseRI	GAGGAG	1 cut(s)	791
BseSI	GKGCMC	1 cut(s)	195
BseXI	GCAGC	1 cut(s)	371
BshFI	GGCC	6 cut(s)	26, 331, 584, 820, 838, 872
BshNI	GGYRCC	2 cut(s)	192, 272
BshTI	ACCGGT	1 cut(s)	638
BsiHKCI	CYCGRG	2 cut(s)	560, 966
BsiSI	CCGG	1 cut(s)	639
BslFI	GGGAC	1 cut(s)	73
BslI	CCNNNNNNNGG	2 cut(s)	202, 215
BsmFI	GGGAC	1 cut(s)	73
BsnI	GGCC	6 cut(s)	26, 331, 584, 820, 838, 872
BsoBI	CYCGRG	2 cut(s)	560, 966
Bsp1286I	GDGCHC	2 cut(s)	195, 459
Bsp1407I	TGTACA	1 cut(s)	81
Bsp143I	GATC	3 cut(s)	13, 283, 541
BspANI	GGCC	6 cut(s)	26, 331, 584, 820, 838, 872
BspCNI	CTCAG	2 cut(s)	139, 157
BspHI	TCATGA	2 cut(s)	18, 489
BspLI	GGNNCC	5 cut(s)	194, 207, 274, 380, 819
BspMAI	CTGCAG	1 cut(s)	301
BspOI	GCTAGC	1 cut(s)	482
BspPI	GGATC	1 cut(s)	549
BspT107I	GGYRCC	2 cut(s)	192, 272
BsrFI	RCCGGY	1 cut(s)	638
BsrGI	TGTACA	1 cut(s)	81
BsrI	ACTGG	4 cut(s)	76, 332, 444, 787
BssAI	RCCGGY	1 cut(s)	638
BssMI	GATC	3 cut(s)	13, 283, 541
Bst2UI	CCWGG	1 cut(s)	734
Bst4CI	ACNGT	5 cut(s)	35, 197, 608, 619, 812
BstAUI	TGTACA	1 cut(s)	81
BstC8I	GCNNGC	3 cut(s)	28, 480, 805
BstDEI	CTNAG	5 cut(s)	8, 147, 165, 828, 866
BstEII	GGTNACC	1 cut(s)	634
BstENI	CCTNNNNNAGG	1 cut(s)	213
BstF5I	GGATG	3 cut(s)	292, 448, 742
BstHHI	GCGC	1 cut(s)	742
BstKTI	GATC	3 cut(s)	16, 286, 544
BstMBI	GATC	3 cut(s)	13, 283, 541
BstMWI	GCNNNNNNNGC	3 cut(s)	311, 337, 484
BstNI	CCWGG	1 cut(s)	734
BstNSI	RCATGY	1 cut(s)	265
BstPI	GGTNACC	1 cut(s)	634
BstSCI	CCNGG	1 cut(s)	732
BstSFI	CTRYAG	2 cut(s)	253, 297
BstSLI	GKGCMC	1 cut(s)	195
BstV1I	GCAGC	1 cut(s)	371
BstV2I	GAAGAC	2 cut(s)	681, 909
BstX2I	RGATCY	1 cut(s)	541
BstYI	RGATCY	1 cut(s)	541
BsuRI	GGCC	6 cut(s)	26, 331, 584, 820, 838, 872
BtgZI	GCGATG	1 cut(s)	948
BtsCI	GGATG	3 cut(s)	292, 448, 742
Cac8I	GCNNGC	3 cut(s)	28, 480, 805
CaiI	CAGNNNCTG	2 cut(s)	39, 305
CciI	TCATGA	2 cut(s)	18, 489
CfoI	GCGC	1 cut(s)	742
Cfr10I	RCCGGY	1 cut(s)	638
Cfr13I	GGNCC	3 cut(s)	24, 818, 870
Csp6I	GTAC	6 cut(s)	82, 259, 273, 516, 620, 856
CspAI	ACCGGT	1 cut(s)	638
CviAII	CATG	5 cut(s)	19, 262, 375, 490, 910
CviQI	GTAC	6 cut(s)	82, 259, 273, 516, 620, 856
DdeI	CTNAG	5 cut(s)	8, 147, 165, 828, 866
DpnI	GATC	3 cut(s)	15, 285, 543
DpnII	GATC	3 cut(s)	13, 283, 541
EaeI	YGGCCR	2 cut(s)	329, 582
Eco147I	AGGCCT	1 cut(s)	838
Eco24I	GRGCYC	1 cut(s)	459
Eco57I	CTGAAG	2 cut(s)	327, 693
Eco88I	CYCGRG	2 cut(s)	560, 966
Eco91I	GGTNACC	1 cut(s)	634
EcoNI	CCTNNNNNAGG	1 cut(s)	213
EcoO109I	RGGNCCY	1 cut(s)	818
EcoO65I	GGTNACC	1 cut(s)	634
EcoRII	CCWGG	1 cut(s)	732
EcoT22I	ATGCAT	1 cut(s)	434
EcoT38I	GRGCYC	1 cut(s)	459
FaeI	CATG	5 cut(s)	22, 265, 378, 493, 913
FaqI	GGGAC	1 cut(s)	73
FatI	CATG	5 cut(s)	18, 261, 374, 489, 909
Fnu4HI	GCNGC	1 cut(s)	360
FokI	GGATG	3 cut(s)	279, 455, 749
FriOI	GRGCYC	1 cut(s)	459
Fsp4HI	GCNGC	1 cut(s)	360
FspBI	CTAG	4 cut(s)	336, 479, 483, 578
GlaI	GCGC	1 cut(s)	741
GluI	GCNGC	1 cut(s)	360
GsuI	CTGGAG	1 cut(s)	716
HaeIII	GGCC	6 cut(s)	26, 331, 584, 820, 838, 872
HapII	CCGG	1 cut(s)	639
HhaI	GCGC	1 cut(s)	742
Hin1II	CATG	5 cut(s)	22, 265, 378, 493, 913
Hin6I	GCGC	1 cut(s)	740
HinP1I	GCGC	1 cut(s)	740
HinfI	GANTC	2 cut(s)	134, 493
HpaII	CCGG	1 cut(s)	639
HphI	GGTGA	4 cut(s)	646, 653, 890, 950
Hpy166II	GTNNAC	2 cut(s)	604, 856
Hpy188I	TCNGA	4 cut(s)	148, 166, 469, 614
Hpy188III	TCNNGA	7 cut(s)	19, 95, 121, 490, 560, 626, 968
Hpy8I	GTNNAC	2 cut(s)	604, 856
HpyAV	CCTTC	2 cut(s)	302, 757
HpyCH4III	ACNGT	5 cut(s)	35, 197, 608, 619, 812
HpyCH4IV	ACGT	1 cut(s)	518
HpyF10VI	GCNNNNNNNGC	3 cut(s)	311, 337, 484
HpyF3I	CTNAG	5 cut(s)	8, 147, 165, 828, 866
HpySE526I	ACGT	1 cut(s)	518
Hsp92II	CATG	5 cut(s)	22, 265, 378, 493, 913
HspAI	GCGC	1 cut(s)	740
KpnI	GGTACC	1 cut(s)	276
Kzo9I	GATC	3 cut(s)	13, 283, 541
LmnI	GCTCC	3 cut(s)	384, 562, 778
Lsp1109I	GCAGC	1 cut(s)	371
LweI	GCATC	5 cut(s)	292, 433, 441, 727, 906
MaeI	CTAG	4 cut(s)	336, 479, 483, 578
MaeII	ACGT	1 cut(s)	518
MaeIII	GTNAC	1 cut(s)	634
MalI	GATC	3 cut(s)	15, 285, 543
MboI	GATC	3 cut(s)	13, 283, 541
MboII	GAAGA	3 cut(s)	78, 686, 914
MfeI	CAATTG	1 cut(s)	498
MflI	RGATCY	1 cut(s)	541
MhlI	GDGCHC	2 cut(s)	195, 459
MlsI	TGGCCA	2 cut(s)	331, 584
MluCI	AATT	7 cut(s)	155, 199, 345, 402, 470, 498, 688
MluNI	TGGCCA	2 cut(s)	331, 584
MnlI	CCTC	9 cut(s)	15, 117, 219, 228, 287, 359, 408, 769, 828
Mox20I	TGGCCA	2 cut(s)	331, 584
Mph1103I	ATGCAT	1 cut(s)	434
MscI	TGGCCA	2 cut(s)	331, 584
MseI	TTAA	1 cut(s)	795
MslI	CAYNNNNRTG	1 cut(s)	914
Msp20I	TGGCCA	2 cut(s)	331, 584
MspA1I	CMGCKG	1 cut(s)	712
MspI	CCGG	1 cut(s)	639
MspR9I	CCNGG	1 cut(s)	734
MunI	CAATTG	1 cut(s)	498
MvaI	CCWGG	1 cut(s)	734
MwoI	GCNNNNNNNGC	3 cut(s)	311, 337, 484
NdeII	GATC	3 cut(s)	13, 283, 541
NheI	GCTAGC	1 cut(s)	478
NlaIII	CATG	5 cut(s)	22, 265, 378, 493, 913
NlaIV	GGNNCC	5 cut(s)	194, 207, 274, 380, 819
NmuCI	GTSAC	1 cut(s)	634
NsiI	ATGCAT	1 cut(s)	434
NspI	RCATGY	1 cut(s)	265
PaeR7I	CTCGAG	1 cut(s)	966
PagI	TCATGA	2 cut(s)	18, 489
PceI	AGGCCT	1 cut(s)	838
PfeI	GAWTC	2 cut(s)	134, 493
PfoI	TCCNGGA	1 cut(s)	732
PinAI	ACCGGT	1 cut(s)	638
PkrI	GCNGC	1 cut(s)	361
Psp6I	CCWGG	1 cut(s)	732
PspEI	GGTNACC	1 cut(s)	634
PspGI	CCWGG	1 cut(s)	732
PspN4I	GGNNCC	5 cut(s)	194, 207, 274, 380, 819
PspPI	GGNCC	3 cut(s)	24, 818, 870
PstI	CTGCAG	1 cut(s)	301
PstNI	CAGNNNCTG	2 cut(s)	39, 305
PsuI	RGATCY	1 cut(s)	541
PvuII	CAGCTG	1 cut(s)	712
RsaI	GTAC	6 cut(s)	83, 260, 274, 517, 621, 857
RsaNI	GTAC	6 cut(s)	82, 259, 273, 516, 620, 856
RseI	CAYNNNNRTG	1 cut(s)	914
SaqAI	TTAA	1 cut(s)	795
SatI	GCNGC	1 cut(s)	360
Sau3AI	GATC	3 cut(s)	13, 283, 541
Sau96I	GGNCC	3 cut(s)	24, 818, 870
ScrFI	CCNGG	1 cut(s)	734
SduI	GDGCHC	2 cut(s)	195, 459
SfaNI	GCATC	5 cut(s)	292, 433, 441, 727, 906
SfcI	CTRYAG	2 cut(s)	253, 297
Sfr274I	CTCGAG	1 cut(s)	966
SlaI	CTCGAG	1 cut(s)	966
SmiMI	CAYNNNNRTG	1 cut(s)	914
SmlI	CTYRAG	2 cut(s)	626, 966
SmoI	CTYRAG	2 cut(s)	626, 966
Sse9I	AATT	7 cut(s)	155, 199, 345, 402, 470, 498, 688
SseBI	AGGCCT	1 cut(s)	838
SspMI	CTAG	4 cut(s)	336, 479, 483, 578
StuI	AGGCCT	1 cut(s)	838
StyD4I	CCNGG	1 cut(s)	732
TaaI	ACNGT	5 cut(s)	35, 197, 608, 619, 812
TaiI	ACGT	1 cut(s)	521
TaqI	TCGA	5 cut(s)	96, 400, 744, 900, 967
TasI	AATT	7 cut(s)	155, 199, 345, 402, 470, 498, 688
TatI	WGTACW	2 cut(s)	81, 619
TfiI	GAWTC	2 cut(s)	134, 493
Tru1I	TTAA	1 cut(s)	795
Tru9I	TTAA	1 cut(s)	795
TseFI	GTSAC	1 cut(s)	634
TseI	GCWGC	1 cut(s)	359
Tsp45I	GTSAC	1 cut(s)	634
TspDTI	ATGAA	2 cut(s)	17, 506
XagI	CCTNNNNNAGG	1 cut(s)	213
XapI	RAATTY	3 cut(s)	155, 470, 688
XceI	RCATGY	1 cut(s)	265
XhoI	CTCGAG	1 cut(s)	966
XspI	CTAG	4 cut(s)	336, 479, 483, 578
Zsp2I	ATGCAT	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.