Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004418

Physical Location & Seq

Genomic Coordinates Forward (+)

72029371 .. 72029835

Gene Structure 465 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0532000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCAAGATTTGTCATGGTTGGTTTGGTCTGTGCAAGTGTATCATTGCTCATGTCATCTGCAGCAGCTCAAGTTCCTGATTATGACTATCTACCCGATGAGTCCATTACCCCTGCTAGCTCTGAAGATGATGAAGCCTACGCTCCAGTTACGATAGAGTATGGGTTTCCACCAGAGCCGTTCCGTGGATATTATGACAATTTAGACCAATGTGAAGACAACTTCAACCTAAATTGTGTTAAAGAGATTTACCGCGGTATGTTCAAAACCGAGCCTCTTAATAAGAACTGTTGCAAGAACCTTGTGCAGATGGGATATGGCTGTCACAGTAGGTTAGCGAAATTTGCGAACCCGAGAAATAAAGCAAAAGCTTCCATGGCATTGGCTAAGAGTGTGCAGATTTGGCAAAAATGTGTCTCAGTTGTTGAAACTGGTCGATTCCCAGCTGTTCCTGCTCCTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

154

Amino Acids

17.11

Weight (kDa)

5.41

Isoelectric Point (pI)

48.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prolamin_like	PF05617	70 - 139	1e-10	Prolamin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48380
fragaria_vesca	FvH4_2g17440 FvH4_2g17440 FvH4_2g17440
malus_domestica	MD05G1153300.v1.1
prunus_persica	Prupe.8G186700_v2.0.a1
pyrus_communis	pycom05g14770 pycom10g12770
rosa_chinensis	RchiOBHm_Chr6g0248541 RchiOBHm_Chr6g0282151
rosa_laevigata	RLG00000012905 RLG00000015144
rosa_multiflora	Rmu_sc0002553.1_g000025 Rmu_sc0002553.1_g000026 Rmu_sc0011940.1_g000001 Rmu_sc0021471.1_g000006
rosa_roxburghii	Rroxscaffold_7G00186440 Rroxscaffold_7G00213230
rosa_rugosa	Rorug05G0532000 Rorug06G0145800
rosa_samantha	Rh6AG048900 Rh6AG258800 Rh6BG044100 Rh6BG044400 Rh6BG262100 Rh6CG041000 Rh6CG261100 Rh6DG037200 Rh6DG253100
rosa_wichuraiana	Rw6G004150 Rw6G004230 Rw6G022400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	255
AciI	CCGC	2 cut(s)	253, 255
AcsI	RAATTY	1 cut(s)	341
AcuI	CTGAAG	1 cut(s)	144
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	3 cut(s)	226, 265, 428
AluBI	AGCT	4 cut(s)	68, 120, 371, 446
AluI	AGCT	4 cut(s)	68, 120, 371, 446
Alw26I	GTCTC	1 cut(s)	421
Ama87I	CYCGRG	1 cut(s)	352
ApeKI	GCWGC	2 cut(s)	62, 65
ApoI	RAATTY	1 cut(s)	341
AsuNHI	GCTAGC	1 cut(s)	116
AvaI	CYCGRG	1 cut(s)	352
BbsI	GAAGAC	1 cut(s)	222
BbvI	GCAGC	2 cut(s)	74, 77
BccI	CCATC	1 cut(s)	304
BceAI	ACGGC	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	421
BfaI	CTAG	1 cut(s)	117
BfmI	CTRYAG	1 cut(s)	60
BisI	GCNGC	2 cut(s)	63, 66
BlsI	GCNGC	2 cut(s)	64, 67
BmeT110I	CYCGRG	1 cut(s)	352
BmtI	GCTAGC	1 cut(s)	120
BpiI	GAAGAC	1 cut(s)	222
BpmI	CTGGAG	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	54
BsaJI	CCNNGG	3 cut(s)	184, 253, 375
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse1I	ACTGG	2 cut(s)	146, 436
Bse3DI	GCAATG	1 cut(s)	44
BseDI	CCNNGG	3 cut(s)	184, 253, 375
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMI	GCAATG	1 cut(s)	44
BseMII	CTCAG	1 cut(s)	432
BseNI	ACTGG	2 cut(s)	146, 436
BseXI	GCAGC	2 cut(s)	74, 77
BseYI	CCCAGC	1 cut(s)	442
BsgI	GTGCAG	2 cut(s)	326, 416
Bsh1236I	CGCG	1 cut(s)	255
BsiHKCI	CYCGRG	1 cut(s)	352
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmAI	GTCTC	1 cut(s)	421
BsoBI	CYCGRG	1 cut(s)	352
Bsp19I	CCATGG	1 cut(s)	375
BspACI	CCGC	2 cut(s)	253, 255
BspCNI	CTCAG	1 cut(s)	431
BspFNI	CGCG	1 cut(s)	255
BspMAI	CTGCAG	1 cut(s)	64
BspOI	GCTAGC	1 cut(s)	120
BsrDI	GCAATG	1 cut(s)	44
BsrI	ACTGG	2 cut(s)	146, 436
BssECI	CCNNGG	3 cut(s)	184, 253, 375
BssT1I	CCWWGG	1 cut(s)	375
Bst4CI	ACNGT	2 cut(s)	290, 329
BstC8I	GCNNGC	1 cut(s)	118
BstDEI	CTNAG	2 cut(s)	387, 418
BstDSI	CCRYGG	3 cut(s)	184, 253, 375
BstFNI	CGCG	1 cut(s)	255
BstMAI	GTCTC	1 cut(s)	421
BstMWI	GCNNNNNNNGC	4 cut(s)	344, 377, 403, 452
BstSFI	CTRYAG	1 cut(s)	60
BstUI	CGCG	1 cut(s)	255
BstV1I	GCAGC	2 cut(s)	74, 77
BstV2I	GAAGAC	1 cut(s)	222
BstXI	CCANNNNNNTGG	1 cut(s)	382
BtgI	CCRYGG	3 cut(s)	184, 253, 375
Cac8I	GCNNGC	1 cut(s)	118
Cfr42I	CCGCGG	1 cut(s)	256
CviAII	CATG	3 cut(s)	16, 52, 376
CviJI	RGCY	9 cut(s)	68, 120, 137, 178, 274, 321, 371, 386, 446
CviKI_1	RGCY	9 cut(s)	68, 120, 137, 178, 274, 321, 371, 386, 446
DdeI	CTNAG	2 cut(s)	387, 418
Eco130I	CCWWGG	1 cut(s)	375
Eco57I	CTGAAG	1 cut(s)	144
Eco88I	CYCGRG	1 cut(s)	352
EcoT14I	CCWWGG	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	375
FaeI	CATG	3 cut(s)	19, 55, 379
FaiI	YATR	8 cut(s)	17, 53, 84, 162, 195, 260, 318, 377
FatI	CATG	3 cut(s)	15, 51, 375
Fnu4HI	GCNGC	2 cut(s)	63, 66
Fsp4HI	GCNGC	2 cut(s)	63, 66
FspBI	CTAG	1 cut(s)	117
GluI	GCNGC	2 cut(s)	63, 66
GsaI	CCCAGC	1 cut(s)	446
GsuI	CTGGAG	1 cut(s)	129
Hin1II	CATG	3 cut(s)	19, 55, 379
HindIII	AAGCTT	1 cut(s)	369
HinfI	GANTC	2 cut(s)	101, 438
Hpy188I	TCNGA	1 cut(s)	124
Hpy188III	TCNNGA	1 cut(s)	77
HpyCH4III	ACNGT	2 cut(s)	290, 329
HpyCH4V	TGCA	5 cut(s)	35, 62, 294, 307, 397
HpyF10VI	GCNNNNNNNGC	4 cut(s)	344, 377, 403, 452
HpyF3I	CTNAG	2 cut(s)	387, 418
Hsp92II	CATG	3 cut(s)	19, 55, 379
KspI	CCGCGG	1 cut(s)	256
LmnI	GCTCC	2 cut(s)	148, 460
LpnPI	CCDG	6 cut(s)	90, 126, 159, 186, 417, 456
Lsp1109I	GCAGC	2 cut(s)	74, 77
MaeI	CTAG	1 cut(s)	117
MaeIII	GTNAC	2 cut(s)	148, 323
MboII	GAAGA	2 cut(s)	137, 227
MluCI	AATT	3 cut(s)	199, 232, 341
MlyI	GAGTC	1 cut(s)	110
MnlI	CCTC	1 cut(s)	285
MseI	TTAA	2 cut(s)	240, 279
MspA1I	CMGCKG	2 cut(s)	255, 446
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	4 cut(s)	344, 377, 403, 452
NcoI	CCATGG	1 cut(s)	375
NheI	GCTAGC	1 cut(s)	116
NlaIII	CATG	3 cut(s)	19, 55, 379
NmuCI	GTSAC	1 cut(s)	323
PfeI	GAWTC	1 cut(s)	438
PkrI	GCNGC	2 cut(s)	64, 67
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
PspFI	CCCAGC	1 cut(s)	442
PstI	CTGCAG	1 cut(s)	64
PvuII	CAGCTG	1 cut(s)	446
SacII	CCGCGG	1 cut(s)	256
SaqAI	TTAA	2 cut(s)	240, 279
SatI	GCNGC	2 cut(s)	63, 66
SchI	GAGTC	1 cut(s)	110
SetI	ASST	7 cut(s)	70, 122, 231, 303, 335, 373, 448
SfcI	CTRYAG	1 cut(s)	60
Sfr303I	CCGCGG	1 cut(s)	256
SgrBI	CCGCGG	1 cut(s)	256
SmlI	CTYRAG	1 cut(s)	69
SmoI	CTYRAG	1 cut(s)	69
Sse9I	AATT	3 cut(s)	199, 232, 341
SsiI	CCGC	2 cut(s)	253, 255
SspMI	CTAG	1 cut(s)	117
StyI	CCWWGG	1 cut(s)	375
TaaI	ACNGT	2 cut(s)	290, 329
TaqI	TCGA	1 cut(s)	436
TasI	AATT	3 cut(s)	199, 232, 341
TfiI	GAWTC	1 cut(s)	438
Tru1I	TTAA	2 cut(s)	240, 279
Tru9I	TTAA	2 cut(s)	240, 279
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	2 cut(s)	62, 65
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	1 cut(s)	147
TspGWI	ACGGA	1 cut(s)	173
XapI	RAATTY	1 cut(s)	341
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.