Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004418

Physical Location & Seq

Genomic Coordinates Reverse (-)

45497586 .. 45499009

Gene Structure 1424 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25309

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAATCCAATTGATACACATTTGAGTACTTTTGTAAATGGGGAGTTTGGAGATCTGGGTTATGTGGCTCCTGAGTATACAAGAACTTTAGTGGCCACTCCAAAAGGGGATGTTTACAGCTTTGGAACTGTACTTCTTGAGTTGGTTACTGGTGAAAGAGCTACCCATATTTCTAAAGCTCCCGAAGATTTCAAAGGAAACTTGGTGGAATGGATCTTGCAGCTGTCAAGCAAATCTCAACTCACAGATGCGATTGACAAATCCTTGATGGGAAAGGGTGTGGATGAGGAGGTTTTCCAGTTCCTTAAAGTTGCTTGCAACTGTGTGGTGCCTACTTCCAAGGAGAGGCCTACTATGTTTGAAGTATTCCAGCTTCTGCGAGCCATCGGACAGAAATATAACTTCACAATTGAGGAAGAGATGTCGACGCCTTCAAACACTGCTGATTGTGCAGGAGAACTCATTGTTGCTCGAGAGATGATGGAGATTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

164

Amino Acids

18.21

Weight (kDa)

4.63

Isoelectric Point (pI)

26.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	13 - 124	1.8e-08	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48380
fragaria_vesca	FvH4_2g17440 FvH4_2g17440 FvH4_2g17440
malus_domestica	MD05G1153300.v1.1
prunus_persica	Prupe.8G186700_v2.0.a1
pyrus_communis	pycom05g14770 pycom10g12770
rosa_chinensis	RchiOBHm_Chr6g0248541 RchiOBHm_Chr6g0282151
rosa_laevigata	RLG00000012905 RLG00000015144
rosa_multiflora	Rmu_sc0002553.1_g000025 Rmu_sc0002553.1_g000026 Rmu_sc0011940.1_g000001 Rmu_sc0021471.1_g000006
rosa_roxburghii	Rroxscaffold_7G00186440 Rroxscaffold_7G00213230
rosa_rugosa	Rorug05G0532000 Rorug06G0145800
rosa_samantha	Rh6AG048900 Rh6AG258800 Rh6BG044100 Rh6BG044400 Rh6BG262100 Rh6CG041000 Rh6CG261100 Rh6DG037200 Rh6DG253100
rosa_wichuraiana	Rw6G004150 Rw6G004230 Rw6G022400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	328
AccI	GTMKAC	2 cut(s)	77, 425
AclWI	GGATC	1 cut(s)	221
AcoI	YGGCCR	1 cut(s)	93
AcyI	GRCGYC	1 cut(s)	428
AfaI	GTAC	2 cut(s)	28, 132
AfiI	CCNNNNNNNGG	1 cut(s)	345
AgsI	TTSAA	3 cut(s)	193, 362, 435
AluBI	AGCT	5 cut(s)	120, 161, 179, 223, 373
AluI	AGCT	5 cut(s)	120, 161, 179, 223, 373
AlwI	GGATC	1 cut(s)	221
AlwNI	CAGNNNCTG	1 cut(s)	376
Ama87I	CYCGRG	1 cut(s)	471
AoxI	GGCC	2 cut(s)	93, 347
ApeKI	GCWGC	1 cut(s)	220
AseI	ATTAAT	1 cut(s)	489
AsuHPI	GGTGA	1 cut(s)	164
AvaI	CYCGRG	1 cut(s)	471
BalI	TGGCCA	1 cut(s)	95
BanI	GGYRCC	1 cut(s)	328
BarI	GAAGNNNNNNTAC	2 cut(s)	357, 389
BbvI	GCAGC	1 cut(s)	232
BccI	CCATC	3 cut(s)	262, 392, 475
BglII	AGATCT	1 cut(s)	52
BisI	GCNGC	1 cut(s)	221
BlsI	GCNGC	1 cut(s)	222
BmcAI	AGTACT	1 cut(s)	28
BmeT110I	CYCGRG	1 cut(s)	471
BmiI	GGNNCC	2 cut(s)	69, 330
BmsI	GCATC	1 cut(s)	238
BpuEI	CTTGAG	1 cut(s)	158
BsaHI	GRCGYC	1 cut(s)	428
BsaJI	CCNNGG	1 cut(s)	339
Bsc4I	CCNNNNNNNGG	1 cut(s)	345
Bse1I	ACTGG	2 cut(s)	154, 298
BseDI	CCNNGG	1 cut(s)	339
BseGI	GGATG	2 cut(s)	115, 289
BseLI	CCNNNNNNNGG	1 cut(s)	345
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	2 cut(s)	154, 298
BseRI	GAGGAG	1 cut(s)	302
BseXI	GCAGC	1 cut(s)	232
BsgI	GTGCAG	1 cut(s)	471
BshFI	GGCC	2 cut(s)	95, 349
BshNI	GGYRCC	1 cut(s)	328
BsiHKCI	CYCGRG	1 cut(s)	471
BslI	CCNNNNNNNGG	1 cut(s)	345
BsnI	GGCC	2 cut(s)	95, 349
BsoBI	CYCGRG	1 cut(s)	471
Bsp143I	GATC	2 cut(s)	52, 213
BspANI	GGCC	2 cut(s)	95, 349
BspCNI	CTCAG	1 cut(s)	64
BspLI	GGNNCC	2 cut(s)	69, 330
BspPI	GGATC	1 cut(s)	221
BspT107I	GGYRCC	1 cut(s)	328
BsrI	ACTGG	2 cut(s)	154, 298
BssECI	CCNNGG	1 cut(s)	339
BssMI	GATC	2 cut(s)	52, 213
BssNAI	GTATAC	1 cut(s)	78
BssNI	GRCGYC	1 cut(s)	428
BssT1I	CCWWGG	1 cut(s)	339
Bst1107I	GTATAC	1 cut(s)	78
Bst4CI	ACNGT	2 cut(s)	130, 323
Bst6I	CTCTTC	1 cut(s)	411
BstACI	GRCGYC	1 cut(s)	428
BstC8I	GCNNGC	2 cut(s)	316, 381
BstDEI	CTNAG	1 cut(s)	72
BstF5I	GGATG	2 cut(s)	115, 289
BstKTI	GATC	2 cut(s)	55, 216
BstMBI	GATC	2 cut(s)	52, 213
BstMWI	GCNNNNNNNGC	1 cut(s)	449
BstV1I	GCAGC	1 cut(s)	232
BstX2I	RGATCY	2 cut(s)	52, 213
BstYI	RGATCY	2 cut(s)	52, 213
BstZ17I	GTATAC	1 cut(s)	78
BsuRI	GGCC	2 cut(s)	95, 349
BtsCI	GGATG	2 cut(s)	115, 289
BtsI	GCAGTG	1 cut(s)	438
BtsIMutI	CAGTG	1 cut(s)	438
Cac8I	GCNNGC	2 cut(s)	316, 381
CaiI	CAGNNNCTG	1 cut(s)	376
CseI	GACGC	1 cut(s)	436
Csp6I	GTAC	2 cut(s)	27, 131
CviJI	RGCY	9 cut(s)	68, 95, 120, 161, 179, 223, 349, 373, 383
CviKI_1	RGCY	9 cut(s)	68, 95, 120, 161, 179, 223, 349, 373, 383
CviQI	GTAC	2 cut(s)	27, 131
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	2 cut(s)	54, 215
DpnII	GATC	2 cut(s)	52, 213
EaeI	YGGCCR	1 cut(s)	93
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
Eco130I	CCWWGG	1 cut(s)	339
Eco147I	AGGCCT	1 cut(s)	349
Eco88I	CYCGRG	1 cut(s)	471
EcoT14I	CCWWGG	1 cut(s)	339
ErhI	CCWWGG	1 cut(s)	339
FaiI	YATR	5 cut(s)	63, 78, 168, 356, 399
FblI	GTMKAC	2 cut(s)	77, 425
Fnu4HI	GCNGC	1 cut(s)	221
FokI	GGATG	2 cut(s)	122, 296
Fsp4HI	GCNGC	1 cut(s)	221
GluI	GCNGC	1 cut(s)	221
HaeIII	GGCC	2 cut(s)	95, 349
HgaI	GACGC	1 cut(s)	436
Hin1I	GRCGYC	1 cut(s)	428
HincII	GTYRAC	1 cut(s)	426
HindII	GTYRAC	1 cut(s)	426
HinfI	GANTC	1 cut(s)	4
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	3 cut(s)	78, 115, 426
Hpy188I	TCNGA	1 cut(s)	389
Hpy188III	TCNNGA	4 cut(s)	71, 137, 182, 473
Hpy8I	GTNNAC	3 cut(s)	78, 115, 426
Hpy99I	CGWCG	1 cut(s)	430
HpyAV	CCTTC	1 cut(s)	441
HpyCH4III	ACNGT	2 cut(s)	130, 323
HpyCH4V	TGCA	3 cut(s)	220, 318, 452
HpyF10VI	GCNNNNNNNGC	1 cut(s)	449
HpyF3I	CTNAG	1 cut(s)	72
Hsp92I	GRCGYC	1 cut(s)	428
Kzo9I	GATC	2 cut(s)	52, 213
LmnI	GCTCC	2 cut(s)	73, 184
LpnPI	CCDG	6 cut(s)	41, 84, 135, 311, 383, 438
Lsp1109I	GCAGC	1 cut(s)	232
LweI	GCATC	1 cut(s)	238
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	2 cut(s)	54, 215
MboI	GATC	2 cut(s)	52, 213
MboII	GAAGA	2 cut(s)	197, 428
MfeI	CAATTG	2 cut(s)	9, 408
MflI	RGATCY	2 cut(s)	52, 213
MlsI	TGGCCA	1 cut(s)	95
MluCI	AATT	3 cut(s)	9, 408, 490
MluNI	TGGCCA	1 cut(s)	95
MnlI	CCTC	4 cut(s)	280, 283, 339, 406
Mox20I	TGGCCA	1 cut(s)	95
MscI	TGGCCA	1 cut(s)	95
MseI	TTAA	2 cut(s)	306, 489
Msp20I	TGGCCA	1 cut(s)	95
MspA1I	CMGCKG	1 cut(s)	223
MunI	CAATTG	2 cut(s)	9, 408
MwoI	GCNNNNNNNGC	1 cut(s)	449
NdeII	GATC	2 cut(s)	52, 213
NlaIV	GGNNCC	2 cut(s)	69, 330
PaeR7I	CTCGAG	1 cut(s)	471
PceI	AGGCCT	1 cut(s)	349
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	1 cut(s)	222
PshBI	ATTAAT	1 cut(s)	489
PspN4I	GGNNCC	2 cut(s)	69, 330
PstNI	CAGNNNCTG	1 cut(s)	376
PsuI	RGATCY	2 cut(s)	52, 213
PvuII	CAGCTG	1 cut(s)	223
RsaI	GTAC	2 cut(s)	28, 132
RsaNI	GTAC	2 cut(s)	27, 131
SalI	GTCGAC	1 cut(s)	424
SaqAI	TTAA	2 cut(s)	306, 489
SatI	GCNGC	1 cut(s)	221
Sau3AI	GATC	2 cut(s)	52, 213
ScaI	AGTACT	1 cut(s)	28
SetI	ASST	6 cut(s)	122, 163, 181, 225, 294, 375
SfaNI	GCATC	1 cut(s)	238
Sfr274I	CTCGAG	1 cut(s)	471
SlaI	CTCGAG	1 cut(s)	471
SmlI	CTYRAG	2 cut(s)	137, 471
SmoI	CTYRAG	2 cut(s)	137, 471
Sse9I	AATT	3 cut(s)	9, 408, 490
SseBI	AGGCCT	1 cut(s)	349
StuI	AGGCCT	1 cut(s)	349
StyI	CCWWGG	1 cut(s)	339
TaaI	ACNGT	2 cut(s)	130, 323
TaqI	TCGA	2 cut(s)	425, 472
TasI	AATT	3 cut(s)	9, 408, 490
TatI	WGTACW	2 cut(s)	26, 130
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	2 cut(s)	306, 489
Tru9I	TTAA	2 cut(s)	306, 489
TscAI	CASTG	1 cut(s)	445
TseI	GCWGC	1 cut(s)	220
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	445
VspI	ATTAAT	1 cut(s)	489
XhoI	CTCGAG	1 cut(s)	471
XmiI	GTMKAC	2 cut(s)	77, 425
ZrmI	AGTACT	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.