Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0007121

Physical Location & Seq

Genomic Coordinates Reverse (-)

15601121 .. 15601483

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g18210.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGGTAATTACAGTTTGAAGTGCTTGTTGCTATCTGGTTTGCTTGTTTCAACCATTGCCATGCAACTTTCCGAAGGTCGAGTGGCAAGAAAAGACCTCGGGATAGACCTTGGAGGTGTTGCTGTTGGAATCGGTACCGGGGGTGGCATTGGTCTTGGTGGGAGTGGTTCAGGCGCCGGCGCAGGATCTGGGTCTGGGTCTGGATCCGGATCAAGTTCGGAGTCAAGTTCAAGCTCATATTCTTCCTCAAGGTCAAATTCAGGGTCAGGATCATCGGGTGGGGGGTCTGAAGCTGGTTCTTCTGCTGGATCTTATGCTGGGTCTAGGGCTGGATCAAGCTCCGGGAATCAAGGCCATGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

10.83

Weight (kDa)

7.92

Isoelectric Point (pI)

42.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30450 AT4G30460
fragaria_vesca	FvH4_2g18210 FvH4_2g18220 FvH4_3g12380
prunus_persica	Prupe.1G098800_v2.0.a1 Prupe.1G098900_v2.0.a1
pyrus_communis	pycom13g28760
rosa_chinensis	RchiOBHm_Chr4g0405081 RchiOBHm_Chr4g0405091
rosa_laevigata	RLG00000008875 RLG00000008876
rosa_roxburghii	Rroxscaffold_5G00349260
rosa_rugosa	Rorug04G0053500
rosa_samantha	Rh1AG384500 Rh4AG127900 Rh4AG128000 Rh4BG121700 Rh4CG135600 Rh4CG135700 Rh4CG136500 Rh4DG122100 Rh4DG122200
rosa_wichuraiana	Rw4G010360 Rw4G010370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	134
AccB1I	GGYRCC	2 cut(s)	134, 173
AccIII	TCCGGA	1 cut(s)	206
AclWI	GGATC	7 cut(s)	193, 198, 211, 217, 277, 316, 340
AcsI	RAATTY	1 cut(s)	256
AcuI	CTGAAG	1 cut(s)	309
AcyI	GRCGYC	1 cut(s)	174
AfaI	GTAC	1 cut(s)	136
AgsI	TTSAA	3 cut(s)	19, 51, 231
AluBI	AGCT	3 cut(s)	234, 293, 339
AluI	AGCT	3 cut(s)	234, 293, 339
AlwI	GGATC	7 cut(s)	193, 198, 211, 217, 277, 316, 340
AlwNI	CAGNNNCTG	1 cut(s)	188
Ama87I	CYCGRG	1 cut(s)	98
Aor13HI	TCCGGA	1 cut(s)	206
AoxI	GGCC	1 cut(s)	352
ApoI	RAATTY	1 cut(s)	256
ArsI	GACNNNNNNTTYG	2 cut(s)	248, 280
Asp718I	GGTACC	1 cut(s)	134
AspLEI	GCGC	2 cut(s)	176, 182
AsuC2I	CCSGG	2 cut(s)	139, 343
AvaI	CYCGRG	1 cut(s)	98
BamHI	GGATCC	1 cut(s)	203
BanI	GGYRCC	2 cut(s)	134, 173
BcnI	CCSGG	2 cut(s)	139, 343
BfaI	CTAG	1 cut(s)	324
BfoI	RGCGCY	1 cut(s)	177
Bme1390I	CCNGG	2 cut(s)	139, 343
BmeT110I	CYCGRG	1 cut(s)	98
BmiI	GGNNCC	3 cut(s)	136, 175, 205
BmrFI	CCNGG	2 cut(s)	139, 343
BpuEI	CTTGAG	1 cut(s)	232
BpuMI	CCSGG	2 cut(s)	139, 343
BsaBI	GATNNNNATC	1 cut(s)	208
BsaHI	GRCGYC	1 cut(s)	174
BsaJI	CCNNGG	4 cut(s)	97, 109, 138, 355
BsaWI	WCCGGW	1 cut(s)	206
Bse118I	RCCGGY	1 cut(s)	176
Bse3DI	GCAATG	1 cut(s)	54
Bse8I	GATNNNNATC	1 cut(s)	208
BseAI	TCCGGA	1 cut(s)	206
BseDI	CCNNGG	4 cut(s)	97, 109, 138, 355
BseJI	GATNNNNATC	1 cut(s)	208
BseMI	GCAATG	1 cut(s)	54
BseYI	CCCAGC	1 cut(s)	317
BshFI	GGCC	1 cut(s)	354
BshNI	GGYRCC	2 cut(s)	134, 173
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	4 cut(s)	138, 177, 207, 342
BsnI	GGCC	1 cut(s)	354
BsoBI	CYCGRG	1 cut(s)	98
Bsp13I	TCCGGA	1 cut(s)	206
Bsp143I	GATC	6 cut(s)	185, 203, 209, 269, 308, 332
Bsp19I	CCATGG	1 cut(s)	355
BspANI	GGCC	1 cut(s)	354
BspEI	TCCGGA	1 cut(s)	206
BspLI	GGNNCC	3 cut(s)	136, 175, 205
BspPI	GGATC	7 cut(s)	193, 198, 211, 217, 277, 316, 340
BspT107I	GGYRCC	2 cut(s)	134, 173
BsrDI	GCAATG	1 cut(s)	54
BsrFI	RCCGGY	1 cut(s)	176
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	4 cut(s)	97, 109, 138, 355
BssMI	GATC	6 cut(s)	185, 203, 209, 269, 308, 332
BssNI	GRCGYC	1 cut(s)	174
BssT1I	CCWWGG	2 cut(s)	109, 355
Bst4CI	ACNGT	1 cut(s)	14
BstACI	GRCGYC	1 cut(s)	174
BstC8I	GCNNGC	1 cut(s)	178
BstDSI	CCRYGG	1 cut(s)	355
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	2 cut(s)	176, 182
BstKTI	GATC	6 cut(s)	188, 206, 212, 272, 311, 335
BstMBI	GATC	6 cut(s)	185, 203, 209, 269, 308, 332
BstSCI	CCNGG	2 cut(s)	137, 341
BstX2I	RGATCY	3 cut(s)	185, 203, 308
BstYI	RGATCY	3 cut(s)	185, 203, 308
BsuRI	GGCC	1 cut(s)	354
BtgI	CCRYGG	1 cut(s)	355
Cac8I	GCNNGC	1 cut(s)	178
CaiI	CAGNNNCTG	1 cut(s)	188
CfoI	GCGC	2 cut(s)	176, 182
Cfr10I	RCCGGY	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	135
CviAII	CATG	2 cut(s)	61, 356
CviJI	RGCY	5 cut(s)	234, 293, 329, 339, 354
CviKI_1	RGCY	5 cut(s)	234, 293, 329, 339, 354
CviQI	GTAC	1 cut(s)	135
DinI	GGCGCC	1 cut(s)	175
DpnI	GATC	6 cut(s)	187, 205, 211, 271, 310, 334
DpnII	GATC	6 cut(s)	185, 203, 209, 269, 308, 332
Eco130I	CCWWGG	2 cut(s)	109, 355
Eco57I	CTGAAG	1 cut(s)	309
Eco88I	CYCGRG	1 cut(s)	98
EcoT14I	CCWWGG	2 cut(s)	109, 355
EgeI	GGCGCC	1 cut(s)	175
EheI	GGCGCC	1 cut(s)	175
ErhI	CCWWGG	2 cut(s)	109, 355
FaeI	CATG	2 cut(s)	64, 359
FaiI	YATR	4 cut(s)	62, 238, 315, 357
FatI	CATG	2 cut(s)	60, 355
FspBI	CTAG	1 cut(s)	324
GlaI	GCGC	2 cut(s)	175, 181
GsaI	CCCAGC	1 cut(s)	321
HaeII	RGCGCY	1 cut(s)	177
HaeIII	GGCC	1 cut(s)	354
HapII	CCGG	4 cut(s)	138, 177, 207, 342
HhaI	GCGC	2 cut(s)	176, 182
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	2 cut(s)	64, 359
Hin6I	GCGC	2 cut(s)	174, 180
HinP1I	GCGC	2 cut(s)	174, 180
HinfI	GANTC	3 cut(s)	129, 221, 346
HpaII	CCGG	4 cut(s)	138, 177, 207, 342
Hpy188I	TCNGA	3 cut(s)	73, 220, 289
Hpy188III	TCNNGA	4 cut(s)	100, 201, 207, 267
HpyAV	CCTTC	1 cut(s)	68
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4V	TGCA	1 cut(s)	64
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	2 cut(s)	64, 359
HspAI	GCGC	2 cut(s)	174, 180
KasI	GGCGCC	1 cut(s)	173
Kpn2I	TCCGGA	1 cut(s)	206
KpnI	GGTACC	1 cut(s)	138
KroI	GCCGGC	1 cut(s)	176
KroNI	GCCGGC	1 cut(s)	178
Kzo9I	GATC	6 cut(s)	185, 203, 209, 269, 308, 332
LmnI	GCTCC	1 cut(s)	344
MaeI	CTAG	1 cut(s)	324
MalI	GATC	6 cut(s)	187, 205, 211, 271, 310, 334
MboI	GATC	6 cut(s)	185, 203, 209, 269, 308, 332
MboII	GAAGA	2 cut(s)	234, 291
MflI	RGATCY	3 cut(s)	185, 203, 308
MluCI	AATT	2 cut(s)	7, 256
Mly113I	GGCGCC	1 cut(s)	174
MlyI	GAGTC	1 cut(s)	230
MmeI	TCCRAC	1 cut(s)	106
MnlI	CCTC	3 cut(s)	107, 107, 256
MreI	CGCCGGCG	1 cut(s)	176
MroI	TCCGGA	1 cut(s)	206
MroNI	GCCGGC	1 cut(s)	176
MslI	CAYNNNNRTG	1 cut(s)	59
MspI	CCGG	4 cut(s)	138, 177, 207, 342
MspR9I	CCNGG	2 cut(s)	139, 343
NaeI	GCCGGC	1 cut(s)	178
NarI	GGCGCC	1 cut(s)	174
NciI	CCSGG	2 cut(s)	139, 343
NcoI	CCATGG	1 cut(s)	355
NdeII	GATC	6 cut(s)	185, 203, 209, 269, 308, 332
NgoMIV	GCCGGC	1 cut(s)	176
NlaIII	CATG	2 cut(s)	64, 359
NlaIV	GGNNCC	3 cut(s)	136, 175, 205
PdiI	GCCGGC	1 cut(s)	178
PfeI	GAWTC	2 cut(s)	129, 346
PfoI	TCCNGGA	1 cut(s)	341
PleI	GAGTC	1 cut(s)	229
PluTI	GGCGCC	1 cut(s)	177
PpsI	GAGTC	1 cut(s)	229
PspFI	CCCAGC	1 cut(s)	317
PspN4I	GGNNCC	3 cut(s)	136, 175, 205
PstNI	CAGNNNCTG	1 cut(s)	188
PsuI	RGATCY	3 cut(s)	185, 203, 308
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
RseI	CAYNNNNRTG	1 cut(s)	59
Sau3AI	GATC	6 cut(s)	185, 203, 209, 269, 308, 332
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	2 cut(s)	139, 343
SetI	ASST	8 cut(s)	79, 99, 111, 118, 236, 254, 295, 341
SfoI	GGCGCC	1 cut(s)	175
SgrAI	CRCCGGYG	1 cut(s)	176
SmiMI	CAYNNNNRTG	1 cut(s)	59
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
Sse9I	AATT	2 cut(s)	7, 256
SspDI	GGCGCC	1 cut(s)	173
SspMI	CTAG	1 cut(s)	324
StyD4I	CCNGG	2 cut(s)	137, 341
StyI	CCWWGG	2 cut(s)	109, 355
TaaI	ACNGT	1 cut(s)	14
TaqI	TCGA	1 cut(s)	79
TasI	AATT	2 cut(s)	7, 256
TfiI	GAWTC	2 cut(s)	129, 346
XapI	RAATTY	1 cut(s)	256
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.