Prupe.1G098900_v2.0.a1

Glycine-rich cell wall structural protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0007121
Physical Location & Seq
Forward (+)
7896025 .. 7896649
625 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G098900.1

Sequence Viewer

Length: 354 bp
ATGGGTAGTTTTAGTTTCAGTTTGAAGTCTTTAACCCTTTTTGCTTTGCTTGTTTCAAGTGTTGTCCTGTCCGAAAGCCGGGTGGCAAGAAAGGACCTGGGGATAGACCTTGGTGGGATTGGGGTTGGAGTGGGAGCTGGATTAGGGATTGGGCTCGGTGGGAGTGGAGCTGGCTCAGGTGCTGGATCGGGGTCAGGTTCGGGATCCGGATCTAGCTCTAGCTCCAGCTCTAGCTCAAGCTCATCTTCTTCGTCCAGATCCAATGGGTCGGGCTCTTCCGAAGCAGGTTCGTCTGCTGGGTCTTATGCCGGGTCTAGGGCTGGGTCAGGCTCAGGAAACGGAGGGCGTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

10.48

Weight (kDa)

10.25

Isoelectric Point (pI)

46.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 275
AccIII TCCGGA 1 cut(s) 206
AclWI GGATC 5 cut(s) 193, 198, 211, 217, 252
AfiI CCNNNNNNNGG 2 cut(s) 78, 315
AgsI TTSAA 2 cut(s) 25, 57
AjnI CCWGG 1 cut(s) 96
AluBI AGCT 7 cut(s) 137, 170, 216, 222, 228, 234, 240
AluI AGCT 7 cut(s) 137, 170, 216, 222, 228, 234, 240
AlwI GGATC 5 cut(s) 193, 198, 211, 217, 252
AlwNI CAGNNNCTG 1 cut(s) 182
Aor13HI TCCGGA 1 cut(s) 206
AspS9I GGNCC 1 cut(s) 94
AsuC2I CCSGG 2 cut(s) 80, 310
AvaII GGWCC 1 cut(s) 94
BamHI GGATCC 1 cut(s) 203
BanII GRGCYC 2 cut(s) 156, 275
BciT130I CCWGG 1 cut(s) 98
BcnI CCSGG 2 cut(s) 80, 310
BfaI CTAG 4 cut(s) 213, 219, 231, 315
BfuAI ACCTGC 1 cut(s) 275
Bme1390I CCNGG 3 cut(s) 80, 98, 310
Bme18I GGWCC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 94
BmiI GGNNCC 1 cut(s) 205
BmrFI CCNGG 3 cut(s) 80, 98, 310
BpmI CTGGAG 1 cut(s) 208
Bpu10I CCTNAGC 2 cut(s) 175, 331
BpuEI CTTGAG 1 cut(s) 220
BpuMI CCSGG 2 cut(s) 80, 310
BsaBI GATNNNNATC 1 cut(s) 208
BsaJI CCNNGG 2 cut(s) 97, 109
BsaWI WCCGGW 1 cut(s) 206
Bsc4I CCNNNNNNNGG 2 cut(s) 78, 315
Bse8I GATNNNNATC 1 cut(s) 208
BseAI TCCGGA 1 cut(s) 206
BseBI CCWGG 1 cut(s) 98
BseDI CCNNGG 2 cut(s) 97, 109
BseJI GATNNNNATC 1 cut(s) 208
BseLI CCNNNNNNNGG 2 cut(s) 78, 315
BseMII CTCAG 2 cut(s) 189, 345
BseYI CCCAGC 2 cut(s) 296, 320
BsiSI CCGG 3 cut(s) 79, 207, 309
BslI CCNNNNNNNGG 2 cut(s) 78, 315
Bsp1286I GDGCHC 2 cut(s) 156, 275
Bsp13I TCCGGA 1 cut(s) 206
Bsp143I GATC 4 cut(s) 185, 203, 209, 257
BspCNI CTCAG 2 cut(s) 188, 344
BspEI TCCGGA 1 cut(s) 206
BspLI GGNNCC 1 cut(s) 205
BspMI ACCTGC 1 cut(s) 275
BspPI GGATC 5 cut(s) 193, 198, 211, 217, 252
BspQI GCTCTTC 1 cut(s) 280
BssECI CCNNGG 2 cut(s) 97, 109
BssMI GATC 4 cut(s) 185, 203, 209, 257
BssT1I CCWWGG 1 cut(s) 109
Bst2UI CCWGG 1 cut(s) 98
Bst6I CTCTTC 1 cut(s) 280
BstC8I GCNNGC 1 cut(s) 172
BstDEI CTNAG 2 cut(s) 175, 331
BstKTI GATC 4 cut(s) 188, 206, 212, 260
BstMBI GATC 4 cut(s) 185, 203, 209, 257
BstNI CCWGG 1 cut(s) 98
BstSCI CCNGG 3 cut(s) 78, 96, 308
BstX2I RGATCY 3 cut(s) 203, 209, 257
BstYI RGATCY 3 cut(s) 203, 209, 257
BveI ACCTGC 1 cut(s) 275
Cac8I GCNNGC 1 cut(s) 172
CaiI CAGNNNCTG 1 cut(s) 182
Cfr13I GGNCC 1 cut(s) 94
DdeI CTNAG 2 cut(s) 175, 331
DpnI GATC 4 cut(s) 187, 205, 211, 259
DpnII GATC 4 cut(s) 185, 203, 209, 257
Eam1104I CTCTTC 1 cut(s) 280
EarI CTCTTC 1 cut(s) 280
Eco130I CCWWGG 1 cut(s) 109
Eco24I GRGCYC 2 cut(s) 156, 275
Eco47I GGWCC 1 cut(s) 94
EcoO109I RGGNCCY 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 96
EcoT14I CCWWGG 1 cut(s) 109
EcoT38I GRGCYC 2 cut(s) 156, 275
ErhI CCWWGG 1 cut(s) 109
FaiI YATR 1 cut(s) 306
FalI AAGNNNNNCTT 2 cut(s) 229, 261
FriOI GRGCYC 2 cut(s) 156, 275
FspBI CTAG 4 cut(s) 213, 219, 231, 315
GsaI CCCAGC 2 cut(s) 300, 324
GsuI CTGGAG 1 cut(s) 208
HapII CCGG 3 cut(s) 79, 207, 309
HpaII CCGG 3 cut(s) 79, 207, 309
Hpy188I TCNGA 2 cut(s) 73, 280
Hpy188III TCNNGA 4 cut(s) 201, 207, 255, 333
HpyF3I CTNAG 2 cut(s) 175, 331
Kpn2I TCCGGA 1 cut(s) 206
Kzo9I GATC 4 cut(s) 185, 203, 209, 257
LguI GCTCTTC 1 cut(s) 280
LmnI GCTCC 3 cut(s) 134, 167, 227
MaeI CTAG 4 cut(s) 213, 219, 231, 315
MalI GATC 4 cut(s) 187, 205, 211, 259
MboI GATC 4 cut(s) 185, 203, 209, 257
MboII GAAGA 3 cut(s) 237, 240, 267
MflI RGATCY 3 cut(s) 203, 209, 257
MhlI GDGCHC 2 cut(s) 156, 275
MmeI TCCRAC 1 cut(s) 106
MnlI CCTC 1 cut(s) 335
MroI TCCGGA 1 cut(s) 206
MseI TTAA 1 cut(s) 32
MspI CCGG 3 cut(s) 79, 207, 309
MspR9I CCNGG 3 cut(s) 80, 98, 310
MvaI CCWGG 1 cut(s) 98
NciI CCSGG 2 cut(s) 80, 310
NdeII GATC 4 cut(s) 185, 203, 209, 257
NlaIV GGNNCC 1 cut(s) 205
PciSI GCTCTTC 1 cut(s) 280
PpuMI RGGWCCY 1 cut(s) 94
Psp5II RGGWCCY 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 96
PspFI CCCAGC 2 cut(s) 296, 320
PspGI CCWGG 1 cut(s) 96
PspN4I GGNNCC 1 cut(s) 205
PspPI GGNCC 1 cut(s) 94
PspPPI RGGWCCY 1 cut(s) 94
PstNI CAGNNNCTG 1 cut(s) 182
PsuI RGATCY 3 cut(s) 203, 209, 257
SapI GCTCTTC 1 cut(s) 280
SaqAI TTAA 1 cut(s) 32
Sau3AI GATC 4 cut(s) 185, 203, 209, 257
Sau96I GGNCC 1 cut(s) 94
ScrFI CCNGG 3 cut(s) 80, 98, 310
SduI GDGCHC 2 cut(s) 156, 275
SinI GGWCC 1 cut(s) 94
SmlI CTYRAG 1 cut(s) 235
SmoI CTYRAG 1 cut(s) 235
SspMI CTAG 4 cut(s) 213, 219, 231, 315
StyD4I CCNGG 3 cut(s) 78, 96, 308
StyI CCWWGG 1 cut(s) 109
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TspGWI ACGGA 1 cut(s) 354
VpaK11BI GGWCC 1 cut(s) 94
XspI CTAG 4 cut(s) 213, 219, 231, 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.