Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0007121

Physical Location & Seq

Genomic Coordinates Reverse (-)

41669699 .. 41670052

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008875

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGGTAATTTCAGTTTGAAGTGCTTGTTCTTAGCTGGTTTACTGGTTTCAACCTTTGCCATGCAACTTTCCGAAGGCCGAGTGGCAAGAAAGGACCTCGGGGTAGACCTCGGTGGTGTTGGGGTTGGCACTGTCGGTGCAGGAATTGGCCTTGGGTTTGGTGGGAGTGGTTCGGGCGCCGGTGCAGGATCTGGCTCTGGCTCCGGGTCTGGGTCAAGTTCGGAGTCAAGTTCAAGCTCATATTCTTCCTCAAGGTCGAGTTCAAGGTCAGGATCATCGGGTGGGGGCTCTGAAGCTGGTTCTTCTGCTGGATCTTATGCCGGGTCTAGGGCTGGGTCGGGCTCCGGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

118

Amino Acids

10.65

Weight (kDa)

9.1

Isoelectric Point (pI)

46.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30450 AT4G30460
fragaria_vesca	FvH4_2g18210 FvH4_2g18220 FvH4_3g12380
prunus_persica	Prupe.1G098800_v2.0.a1 Prupe.1G098900_v2.0.a1
pyrus_communis	pycom13g28760
rosa_chinensis	RchiOBHm_Chr4g0405081 RchiOBHm_Chr4g0405091
rosa_laevigata	RLG00000008875 RLG00000008876
rosa_roxburghii	Rroxscaffold_5G00349260
rosa_rugosa	Rorug04G0053500
rosa_samantha	Rh1AG384500 Rh4AG127900 Rh4AG128000 Rh4BG121700 Rh4CG135600 Rh4CG135700 Rh4CG136500 Rh4DG122100 Rh4DG122200
rosa_wichuraiana	Rw4G010360 Rw4G010370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	176
AccI	GTMKAC	1 cut(s)	105
AccIII	TCCGGA	1 cut(s)	344
AclWI	GGATC	3 cut(s)	196, 280, 319
AcuI	CTGAAG	1 cut(s)	312
AcyI	GRCGYC	1 cut(s)	177
AfiI	CCNNNNNNNGG	2 cut(s)	210, 327
AgsI	TTSAA	4 cut(s)	19, 51, 234, 264
AluBI	AGCT	3 cut(s)	35, 237, 296
AluI	AGCT	3 cut(s)	35, 237, 296
AlwI	GGATC	3 cut(s)	196, 280, 319
AlwNI	CAGNNNCTG	1 cut(s)	191
Ama87I	CYCGRG	1 cut(s)	98
Aor13HI	TCCGGA	1 cut(s)	344
AoxI	GGCC	2 cut(s)	76, 148
AspLEI	GCGC	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	94
AsuC2I	CCSGG	2 cut(s)	205, 322
AvaI	CYCGRG	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	94
BanI	GGYRCC	1 cut(s)	176
BanII	GRGCYC	2 cut(s)	290, 344
BcnI	CCSGG	2 cut(s)	205, 322
BfaI	CTAG	1 cut(s)	327
BfoI	RGCGCY	1 cut(s)	180
Bme1390I	CCNGG	2 cut(s)	205, 322
Bme18I	GGWCC	1 cut(s)	94
BmeT110I	CYCGRG	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	94
BmiI	GGNNCC	3 cut(s)	178, 202, 343
BmrFI	CCNGG	2 cut(s)	205, 322
BpuEI	CTTGAG	1 cut(s)	235
BpuMI	CCSGG	2 cut(s)	205, 322
BsaHI	GRCGYC	1 cut(s)	177
BsaJI	CCNNGG	3 cut(s)	97, 109, 151
BsaWI	WCCGGW	1 cut(s)	344
Bsc4I	CCNNNNNNNGG	2 cut(s)	210, 327
Bse118I	RCCGGY	1 cut(s)	179
Bse1I	ACTGG	1 cut(s)	48
BseAI	TCCGGA	1 cut(s)	344
BseDI	CCNNGG	3 cut(s)	97, 109, 151
BseLI	CCNNNNNNNGG	2 cut(s)	210, 327
BseNI	ACTGG	1 cut(s)	48
BseYI	CCCAGC	1 cut(s)	332
BsgI	GTGCAG	2 cut(s)	159, 204
BshFI	GGCC	2 cut(s)	78, 150
BshNI	GGYRCC	1 cut(s)	176
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	4 cut(s)	180, 204, 321, 345
BslI	CCNNNNNNNGG	2 cut(s)	210, 327
BsnI	GGCC	2 cut(s)	78, 150
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	2 cut(s)	290, 344
Bsp13I	TCCGGA	1 cut(s)	344
Bsp143I	GATC	3 cut(s)	188, 272, 311
BspANI	GGCC	2 cut(s)	78, 150
BspEI	TCCGGA	1 cut(s)	344
BspLI	GGNNCC	3 cut(s)	178, 202, 343
BspPI	GGATC	3 cut(s)	196, 280, 319
BspT107I	GGYRCC	1 cut(s)	176
BsrFI	RCCGGY	1 cut(s)	179
BsrI	ACTGG	1 cut(s)	48
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	3 cut(s)	97, 109, 151
BssMI	GATC	3 cut(s)	188, 272, 311
BssNI	GRCGYC	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	151
Bst4CI	ACNGT	1 cut(s)	133
BstACI	GRCGYC	1 cut(s)	177
BstDEI	CTNAG	1 cut(s)	31
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	3 cut(s)	191, 275, 314
BstMBI	GATC	3 cut(s)	188, 272, 311
BstSCI	CCNGG	2 cut(s)	203, 320
BstX2I	RGATCY	2 cut(s)	188, 311
BstYI	RGATCY	2 cut(s)	188, 311
BsuRI	GGCC	2 cut(s)	78, 150
BtsIMutI	CAGTG	1 cut(s)	129
CaiI	CAGNNNCTG	1 cut(s)	191
CfoI	GCGC	1 cut(s)	179
Cfr10I	RCCGGY	1 cut(s)	179
Cfr13I	GGNCC	1 cut(s)	94
CviAII	CATG	1 cut(s)	61
DdeI	CTNAG	1 cut(s)	31
DinI	GGCGCC	1 cut(s)	178
DpnI	GATC	3 cut(s)	190, 274, 313
DpnII	GATC	3 cut(s)	188, 272, 311
Eco130I	CCWWGG	1 cut(s)	151
Eco24I	GRGCYC	2 cut(s)	290, 344
Eco47I	GGWCC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	312
Eco88I	CYCGRG	1 cut(s)	98
EcoO109I	RGGNCCY	1 cut(s)	94
EcoT14I	CCWWGG	1 cut(s)	151
EcoT38I	GRGCYC	2 cut(s)	290, 344
EgeI	GGCGCC	1 cut(s)	178
EheI	GGCGCC	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	151
FaeI	CATG	1 cut(s)	64
FaiI	YATR	3 cut(s)	62, 241, 318
FatI	CATG	1 cut(s)	60
FblI	GTMKAC	1 cut(s)	105
FriOI	GRGCYC	2 cut(s)	290, 344
FspBI	CTAG	1 cut(s)	327
GlaI	GCGC	1 cut(s)	178
GsaI	CCCAGC	1 cut(s)	336
HaeII	RGCGCY	1 cut(s)	180
HaeIII	GGCC	2 cut(s)	78, 150
HapII	CCGG	4 cut(s)	180, 204, 321, 345
HhaI	GCGC	1 cut(s)	179
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	1 cut(s)	64
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HinfI	GANTC	1 cut(s)	224
HpaII	CCGG	4 cut(s)	180, 204, 321, 345
Hpy166II	GTNNAC	2 cut(s)	41, 106
Hpy188I	TCNGA	3 cut(s)	73, 223, 292
Hpy188III	TCNNGA	2 cut(s)	270, 345
Hpy8I	GTNNAC	2 cut(s)	41, 106
HpyAV	CCTTC	1 cut(s)	68
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4V	TGCA	3 cut(s)	64, 140, 185
HpyF3I	CTNAG	1 cut(s)	31
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	1 cut(s)	64
HspAI	GCGC	1 cut(s)	177
KasI	GGCGCC	1 cut(s)	176
Kpn2I	TCCGGA	1 cut(s)	344
Kzo9I	GATC	3 cut(s)	188, 272, 311
LmnI	GCTCC	2 cut(s)	206, 347
MaeI	CTAG	1 cut(s)	327
MalI	GATC	3 cut(s)	190, 274, 313
MboI	GATC	3 cut(s)	188, 272, 311
MboII	GAAGA	2 cut(s)	237, 294
MflI	RGATCY	2 cut(s)	188, 311
MhlI	GDGCHC	2 cut(s)	290, 344
MluCI	AATT	3 cut(s)	7, 144, 349
Mly113I	GGCGCC	1 cut(s)	177
MlyI	GAGTC	1 cut(s)	233
MnlI	CCTC	3 cut(s)	107, 119, 259
MroI	TCCGGA	1 cut(s)	344
MseI	TTAA	1 cut(s)	352
MspI	CCGG	4 cut(s)	180, 204, 321, 345
MspR9I	CCNGG	2 cut(s)	205, 322
NarI	GGCGCC	1 cut(s)	177
NciI	CCSGG	2 cut(s)	205, 322
NdeII	GATC	3 cut(s)	188, 272, 311
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	3 cut(s)	178, 202, 343
NmeAIII	GCCGAG	1 cut(s)	104
PleI	GAGTC	1 cut(s)	232
PluTI	GGCGCC	1 cut(s)	180
PpsI	GAGTC	1 cut(s)	232
PpuMI	RGGWCCY	1 cut(s)	94
Psp5II	RGGWCCY	1 cut(s)	94
PspFI	CCCAGC	1 cut(s)	332
PspN4I	GGNNCC	3 cut(s)	178, 202, 343
PspPI	GGNCC	1 cut(s)	94
PspPPI	RGGWCCY	1 cut(s)	94
PstNI	CAGNNNCTG	1 cut(s)	191
PsuI	RGATCY	2 cut(s)	188, 311
SaqAI	TTAA	1 cut(s)	352
Sau3AI	GATC	3 cut(s)	188, 272, 311
Sau96I	GGNCC	1 cut(s)	94
SchI	GAGTC	1 cut(s)	233
ScrFI	CCNGG	2 cut(s)	205, 322
SduI	GDGCHC	2 cut(s)	290, 344
SetI	ASST	8 cut(s)	37, 56, 99, 111, 239, 257, 269, 298
SfoI	GGCGCC	1 cut(s)	178
SgrAI	CRCCGGYG	1 cut(s)	179
SinI	GGWCC	1 cut(s)	94
SmlI	CTYRAG	1 cut(s)	250
SmoI	CTYRAG	1 cut(s)	250
Sse9I	AATT	3 cut(s)	7, 144, 349
SspDI	GGCGCC	1 cut(s)	176
SspMI	CTAG	1 cut(s)	327
StyD4I	CCNGG	2 cut(s)	203, 320
StyI	CCWWGG	1 cut(s)	151
TaaI	ACNGT	1 cut(s)	133
TaqI	TCGA	1 cut(s)	257
TasI	AATT	3 cut(s)	7, 144, 349
Tru1I	TTAA	1 cut(s)	352
Tru9I	TTAA	1 cut(s)	352
TscAI	CASTG	1 cut(s)	136
TspRI	CASTG	1 cut(s)	136
VpaK11BI	GGWCC	1 cut(s)	94
XmiI	GTMKAC	1 cut(s)	105
XspI	CTAG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.