Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0007121

Physical Location & Seq

Genomic Coordinates Reverse (-)

41672337 .. 41672849

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008876

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGCTGCATTCAAGTCAGTAGCTCTTCTTGCTTTGGTTGTTGCTGTGTCAATGTCGGGTATTAAGGTATCCGAGAGCCGAGTTGCAAGGAAGGATTTGGGTATTGATCTTGGAGGAATTGGGATTGGAGCAGGAGTGGGACTAGGTTTAGGGCTAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGGTCTGGGTCAGGGTCTGGATCCGGATCCGGATCCGGCTCAGGTTCCAGCGGTTCTAGTTCTGCGTCAAGTTCAGCATCATCAAGTTCAAGTTCGACTTCTAGGTCTGGTGGTGGAGGTAGCAGTGCAGGCTCCGAAGCAAGTTCATCTGCCGGATCTAGGGCCGGGTCGGGGTCTTCAGGGAAAAATACACAGGGTGGTGGACGTGGTTCTGGGTCGGGTTCTGGAGGGGGCGGGGGTTCGGGGAGGGGAAGTGGCTCTGGTAATGGTGAGGGTTATGGTGAGGGGCGTGGATATGGTGAGGGCTCTGGCAGTGGAGGCGGCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

171

Amino Acids

14.48

Weight (kDa)

9.98

Isoelectric Point (pI)

40.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30450 AT4G30460
fragaria_vesca	FvH4_2g18210 FvH4_2g18220 FvH4_3g12380
prunus_persica	Prupe.1G098800_v2.0.a1 Prupe.1G098900_v2.0.a1
pyrus_communis	pycom13g28760
rosa_chinensis	RchiOBHm_Chr4g0405081 RchiOBHm_Chr4g0405091
rosa_laevigata	RLG00000008875 RLG00000008876
rosa_roxburghii	Rroxscaffold_5G00349260
rosa_rugosa	Rorug04G0053500
rosa_samantha	Rh1AG384500 Rh4AG127900 Rh4AG128000 Rh4BG121700 Rh4CG135600 Rh4CG135700 Rh4CG136500 Rh4DG122100 Rh4DG122200
rosa_wichuraiana	Rw4G010360 Rw4G010370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	286
AccIII	TCCGGA	2 cut(s)	206, 212
AciI	CCGC	3 cut(s)	234, 417, 504
AclWI	GGATC	7 cut(s)	198, 204, 210, 211, 217, 223, 346
AcuI	CTGAAG	1 cut(s)	345
AdeI	CACNNNGTG	1 cut(s)	380
AfiI	CCNNNNNNNGG	2 cut(s)	342, 354
AgsI	TTSAA	2 cut(s)	13, 273
AjiI	CACGTC	1 cut(s)	389
AluBI	AGCT	1 cut(s)	23
AluI	AGCT	1 cut(s)	23
AlwI	GGATC	7 cut(s)	198, 204, 210, 211, 217, 223, 346
AlwNI	CAGNNNCTG	1 cut(s)	200
Aor13HI	TCCGGA	2 cut(s)	206, 212
AoxI	GGCC	1 cut(s)	345
ApeKI	GCWGC	1 cut(s)	5
AspS9I	GGNCC	1 cut(s)	345
AsuC2I	CCSGG	1 cut(s)	349
AsuHPI	GGTGA	3 cut(s)	464, 476, 494
BamHI	GGATCC	3 cut(s)	203, 209, 215
BanII	GRGCYC	1 cut(s)	491
BbsI	GAAGAC	1 cut(s)	351
BciVI	GTATCC	1 cut(s)	79
BcnI	CCSGG	1 cut(s)	349
BfaI	CTAG	5 cut(s)	143, 155, 240, 285, 342
BfuI	GTATCC	1 cut(s)	79
BisI	GCNGC	2 cut(s)	6, 505
BlsI	GCNGC	2 cut(s)	7, 506
Bme1390I	CCNGG	1 cut(s)	349
BmgBI	CACGTC	1 cut(s)	389
BmgT120I	GGNCC	1 cut(s)	345
BmiI	GGNNCC	5 cut(s)	205, 211, 217, 229, 316
BmrFI	CCNGG	1 cut(s)	349
BmsI	GCATC	1 cut(s)	269
BpiI	GAAGAC	1 cut(s)	351
BpmI	CTGGAG	1 cut(s)	429
Bpu10I	CCTNAGC	1 cut(s)	223
BpuMI	CCSGG	1 cut(s)	349
BsaBI	GATNNNNATC	2 cut(s)	208, 214
BsaWI	WCCGGW	2 cut(s)	206, 212
BsaXI	ACNNNNNCTCC	4 cut(s)	120, 150, 421, 451
Bsc4I	CCNNNNNNNGG	2 cut(s)	342, 354
Bse8I	GATNNNNATC	2 cut(s)	208, 214
BseAI	TCCGGA	2 cut(s)	206, 212
BseJI	GATNNNNATC	2 cut(s)	208, 214
BseLI	CCNNNNNNNGG	2 cut(s)	342, 354
BseMII	CTCAG	1 cut(s)	237
BsgI	GTGCAG	1 cut(s)	330
BshFI	GGCC	1 cut(s)	347
BsiSI	CCGG	5 cut(s)	207, 213, 219, 336, 348
BslFI	GGGAC	1 cut(s)	153
BslI	CCNNNNNNNGG	2 cut(s)	342, 354
BsmFI	GGGAC	1 cut(s)	153
BsmI	GAATGC	1 cut(s)	8
BsnI	GGCC	1 cut(s)	347
Bsp1286I	GDGCHC	1 cut(s)	491
Bsp13I	TCCGGA	2 cut(s)	206, 212
Bsp143I	GATC	5 cut(s)	106, 203, 209, 215, 338
BspACI	CCGC	3 cut(s)	234, 417, 504
BspANI	GGCC	1 cut(s)	347
BspCNI	CTCAG	1 cut(s)	236
BspEI	TCCGGA	2 cut(s)	206, 212
BspLI	GGNNCC	5 cut(s)	205, 211, 217, 229, 316
BspPI	GGATC	7 cut(s)	198, 204, 210, 211, 217, 223, 346
BspQI	GCTCTTC	1 cut(s)	30
BssMI	GATC	5 cut(s)	106, 203, 209, 215, 338
Bst6I	CTCTTC	1 cut(s)	30
BstC8I	GCNNGC	1 cut(s)	313
BstDEI	CTNAG	1 cut(s)	223
BstKTI	GATC	5 cut(s)	109, 206, 212, 218, 341
BstMBI	GATC	5 cut(s)	106, 203, 209, 215, 338
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 312, 501
BstSCI	CCNGG	1 cut(s)	347
BstV2I	GAAGAC	1 cut(s)	351
BstX2I	RGATCY	4 cut(s)	203, 209, 215, 338
BstYI	RGATCY	4 cut(s)	203, 209, 215, 338
BsuI	GTATCC	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	347
BtrI	CACGTC	1 cut(s)	389
BtsI	GCAGTG	2 cut(s)	313, 502
BtsIMutI	CAGTG	2 cut(s)	313, 502
Cac8I	GCNNGC	1 cut(s)	313
CaiI	CAGNNNCTG	1 cut(s)	200
Cfr13I	GGNCC	1 cut(s)	345
CseI	GACGC	1 cut(s)	237
CviJI	RGCY	9 cut(s)	5, 23, 78, 154, 222, 315, 347, 441, 489
CviKI_1	RGCY	9 cut(s)	5, 23, 78, 154, 222, 315, 347, 441, 489
DdeI	CTNAG	1 cut(s)	223
DpnI	GATC	5 cut(s)	108, 205, 211, 217, 340
DpnII	GATC	5 cut(s)	106, 203, 209, 215, 338
DraIII	CACNNNGTG	1 cut(s)	380
DrdI	GACNNNNNNGTC	1 cut(s)	286
DseDI	GACNNNNNNGTC	1 cut(s)	286
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	491
Eco57I	CTGAAG	1 cut(s)	345
EcoT38I	GRGCYC	1 cut(s)	491
FaiI	YATR	2 cut(s)	462, 480
FalI	AAGNNNNNCTT	2 cut(s)	265, 297
FaqI	GGGAC	1 cut(s)	153
FauI	CCCGC	1 cut(s)	410
Fnu4HI	GCNGC	2 cut(s)	6, 505
FriOI	GRGCYC	1 cut(s)	491
Fsp4HI	GCNGC	2 cut(s)	6, 505
FspBI	CTAG	5 cut(s)	143, 155, 240, 285, 342
GluI	GCNGC	2 cut(s)	6, 505
GsuI	CTGGAG	1 cut(s)	429
HaeIII	GGCC	1 cut(s)	347
HapII	CCGG	5 cut(s)	207, 213, 219, 336, 348
HgaI	GACGC	1 cut(s)	237
HpaII	CCGG	5 cut(s)	207, 213, 219, 336, 348
HphI	GGTGA	3 cut(s)	464, 476, 494
Hpy166II	GTNNAC	1 cut(s)	386
Hpy188I	TCNGA	2 cut(s)	73, 319
Hpy188III	TCNNGA	4 cut(s)	201, 207, 213, 408
Hpy8I	GTNNAC	1 cut(s)	386
HpyAV	CCTTC	1 cut(s)	85
HpyCH4IV	ACGT	1 cut(s)	388
HpyCH4V	TGCA	3 cut(s)	8, 86, 311
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 312, 501
HpyF3I	CTNAG	1 cut(s)	223
HpySE526I	ACGT	1 cut(s)	388
Kpn2I	TCCGGA	2 cut(s)	206, 212
Kzo9I	GATC	5 cut(s)	106, 203, 209, 215, 338
LguI	GCTCTTC	1 cut(s)	30
LmnI	GCTCC	2 cut(s)	128, 320
LweI	GCATC	1 cut(s)	269
MaeI	CTAG	5 cut(s)	143, 155, 240, 285, 342
MaeII	ACGT	1 cut(s)	388
MalI	GATC	5 cut(s)	108, 205, 211, 217, 340
MboI	GATC	5 cut(s)	106, 203, 209, 215, 338
MboII	GAAGA	2 cut(s)	17, 351
MflI	RGATCY	4 cut(s)	203, 209, 215, 338
MhlI	GDGCHC	1 cut(s)	491
MluCI	AATT	1 cut(s)	117
MroI	TCCGGA	2 cut(s)	206, 212
MseI	TTAA	1 cut(s)	63
MspA1I	CMGCKG	1 cut(s)	234
MspI	CCGG	5 cut(s)	207, 213, 219, 336, 348
MspR9I	CCNGG	1 cut(s)	349
Mva1269I	GAATGC	1 cut(s)	8
MwoI	GCNNNNNNNGC	3 cut(s)	29, 312, 501
NciI	CCSGG	1 cut(s)	349
NdeII	GATC	5 cut(s)	106, 203, 209, 215, 338
NlaIV	GGNNCC	5 cut(s)	205, 211, 217, 229, 316
NmeAIII	GCCGAG	1 cut(s)	104
PciSI	GCTCTTC	1 cut(s)	30
PctI	GAATGC	1 cut(s)	8
PkrI	GCNGC	2 cut(s)	7, 506
PspN4I	GGNNCC	5 cut(s)	205, 211, 217, 229, 316
PspPI	GGNCC	1 cut(s)	345
PstNI	CAGNNNCTG	1 cut(s)	200
PsuI	RGATCY	4 cut(s)	203, 209, 215, 338
SapI	GCTCTTC	1 cut(s)	30
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	2 cut(s)	6, 505
Sau3AI	GATC	5 cut(s)	106, 203, 209, 215, 338
Sau96I	GGNCC	1 cut(s)	345
ScrFI	CCNGG	1 cut(s)	349
SduI	GDGCHC	1 cut(s)	491
SfaNI	GCATC	1 cut(s)	269
Sse9I	AATT	1 cut(s)	117
SsiI	CCGC	3 cut(s)	234, 417, 504
SspMI	CTAG	5 cut(s)	143, 155, 240, 285, 342
StyD4I	CCNGG	1 cut(s)	347
TaiI	ACGT	1 cut(s)	391
TaqI	TCGA	1 cut(s)	278
TasI	AATT	1 cut(s)	117
TauI	GCSGC	1 cut(s)	507
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	2 cut(s)	313, 502
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	318
TspRI	CASTG	2 cut(s)	313, 502
XspI	CTAG	5 cut(s)	143, 155, 240, 285, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.