Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0007121

Physical Location & Seq

Genomic Coordinates Forward (+)

19511149 .. 19512200

Gene Structure 1052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG122100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCTGCATTCAAGTCAGTAGCTCTTCTTGCTTTGGTTGTTGTTGCTATGTCAATGTCGGGTATTAAGGTATCCGAGGGCCGAGTTGCAAGGAAGGATTTGGGTATTGATCTTGGAGGAATTGGGATTGGAGCAGGAGTGGGACTAGGTTTAGGGCTAGGTGGAGGTCAAGGTGGCTCTGGGTCAGGGTCTGGATCCGGATCCGGATCCGGCTCAGGTTCCGGCGGTTCTAGTTCTGCGTCAAGTTCAGCTTCATCAAGTTCAAGTTCGACTTCTGGGTCTCGTGGTGGAGGTAGCAGTGCAGGCTCCGAGGCAAGTTCATCTGCCGGATCTCGGGCCGGGTCGGGGTCTTCAGGGAAAAATACACAGGGTGGTGGACGTGGTTCGGGCTCGGGTTCTGGAGGGGGCGGGGGTGAGGGGAGGGGAAGTGGCTCTGGTAATGGTGAGGGTTATGGTGAGGGGCGTGGATACGGTGAGGGCTCTGGCAGTGGAGGCAGCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

14.47

Weight (kDa)

9.69

Isoelectric Point (pI)

32.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30450 AT4G30460
fragaria_vesca	FvH4_2g18210 FvH4_2g18220 FvH4_3g12380
prunus_persica	Prupe.1G098800_v2.0.a1 Prupe.1G098900_v2.0.a1
pyrus_communis	pycom13g28760
rosa_chinensis	RchiOBHm_Chr4g0405081 RchiOBHm_Chr4g0405091
rosa_laevigata	RLG00000008875 RLG00000008876
rosa_roxburghii	Rroxscaffold_5G00349260
rosa_rugosa	Rorug04G0053500
rosa_samantha	Rh1AG384500 Rh4AG127900 Rh4AG128000 Rh4BG121700 Rh4CG135600 Rh4CG135700 Rh4CG136500 Rh4DG122100 Rh4DG122200
rosa_wichuraiana	Rw4G010360 Rw4G010370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	277
AccIII	TCCGGA	2 cut(s)	197, 203
AciI	CCGC	2 cut(s)	225, 408
AclWI	GGATC	7 cut(s)	189, 195, 201, 202, 208, 214, 337
AcuI	CTGAAG	1 cut(s)	336
AdeI	CACNNNGTG	1 cut(s)	371
AfiI	CCNNNNNNNGG	2 cut(s)	333, 345
AgsI	TTSAA	2 cut(s)	13, 264
AjiI	CACGTC	1 cut(s)	380
AluBI	AGCT	2 cut(s)	23, 251
AluI	AGCT	2 cut(s)	23, 251
Alw26I	GTCTC	1 cut(s)	285
AlwI	GGATC	7 cut(s)	189, 195, 201, 202, 208, 214, 337
AlwNI	CAGNNNCTG	1 cut(s)	191
Ama87I	CYCGRG	2 cut(s)	333, 391
Aor13HI	TCCGGA	2 cut(s)	197, 203
AoxI	GGCC	2 cut(s)	79, 336
ApeKI	GCWGC	2 cut(s)	5, 495
AspS9I	GGNCC	2 cut(s)	79, 336
AsuC2I	CCSGG	1 cut(s)	340
AsuHPI	GGTGA	4 cut(s)	425, 455, 467, 485
AvaI	CYCGRG	2 cut(s)	333, 391
BamHI	GGATCC	3 cut(s)	194, 200, 206
BanII	GRGCYC	2 cut(s)	392, 482
BauI	CACGAG	1 cut(s)	282
BbsI	GAAGAC	1 cut(s)	342
BciVI	GTATCC	2 cut(s)	82, 461
BcnI	CCSGG	1 cut(s)	340
BcoDI	GTCTC	1 cut(s)	285
BfaI	CTAG	3 cut(s)	146, 158, 231
BfuI	GTATCC	2 cut(s)	82, 461
BisI	GCNGC	2 cut(s)	6, 496
BlsI	GCNGC	2 cut(s)	7, 497
Bme1390I	CCNGG	1 cut(s)	340
BmeT110I	CYCGRG	2 cut(s)	333, 391
BmgBI	CACGTC	1 cut(s)	380
BmgT120I	GGNCC	2 cut(s)	79, 336
BmiI	GGNNCC	5 cut(s)	196, 202, 208, 220, 307
BmrFI	CCNGG	1 cut(s)	340
BpiI	GAAGAC	1 cut(s)	342
BpmI	CTGGAG	1 cut(s)	420
Bpu10I	CCTNAGC	1 cut(s)	214
BpuMI	CCSGG	1 cut(s)	340
BsaBI	GATNNNNATC	2 cut(s)	199, 205
BsaI	GGTCTC	1 cut(s)	285
BsaJI	CCNNGG	2 cut(s)	75, 309
BsaWI	WCCGGW	2 cut(s)	197, 203
BsaXI	ACNNNNNCTCC	4 cut(s)	123, 153, 412, 442
Bsc4I	CCNNNNNNNGG	2 cut(s)	333, 345
Bse8I	GATNNNNATC	2 cut(s)	199, 205
BseAI	TCCGGA	2 cut(s)	197, 203
BseDI	CCNNGG	2 cut(s)	75, 309
BseJI	GATNNNNATC	2 cut(s)	199, 205
BseLI	CCNNNNNNNGG	2 cut(s)	333, 345
BseMII	CTCAG	1 cut(s)	228
BsgI	GTGCAG	1 cut(s)	321
BshFI	GGCC	2 cut(s)	81, 338
BsiHKCI	CYCGRG	2 cut(s)	333, 391
BsiSI	CCGG	6 cut(s)	198, 204, 210, 222, 327, 339
BslFI	GGGAC	1 cut(s)	156
BslI	CCNNNNNNNGG	2 cut(s)	333, 345
BsmAI	GTCTC	1 cut(s)	285
BsmFI	GGGAC	1 cut(s)	156
BsmI	GAATGC	1 cut(s)	8
BsnI	GGCC	2 cut(s)	81, 338
Bso31I	GGTCTC	1 cut(s)	285
BsoBI	CYCGRG	2 cut(s)	333, 391
Bsp1286I	GDGCHC	2 cut(s)	392, 482
Bsp13I	TCCGGA	2 cut(s)	197, 203
Bsp143I	GATC	5 cut(s)	109, 194, 200, 206, 329
BspACI	CCGC	2 cut(s)	225, 408
BspANI	GGCC	2 cut(s)	81, 338
BspCNI	CTCAG	1 cut(s)	227
BspEI	TCCGGA	2 cut(s)	197, 203
BspLI	GGNNCC	5 cut(s)	196, 202, 208, 220, 307
BspPI	GGATC	7 cut(s)	189, 195, 201, 202, 208, 214, 337
BspQI	GCTCTTC	1 cut(s)	30
BspTNI	GGTCTC	1 cut(s)	285
BssECI	CCNNGG	2 cut(s)	75, 309
BssMI	GATC	5 cut(s)	109, 194, 200, 206, 329
BssSI	CACGAG	1 cut(s)	282
Bst2BI	CACGAG	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	473
Bst6I	CTCTTC	1 cut(s)	30
BstC8I	GCNNGC	1 cut(s)	304
BstDEI	CTNAG	1 cut(s)	214
BstKTI	GATC	5 cut(s)	112, 197, 203, 209, 332
BstMAI	GTCTC	1 cut(s)	285
BstMBI	GATC	5 cut(s)	109, 194, 200, 206, 329
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 303, 492
BstSCI	CCNGG	1 cut(s)	338
BstV2I	GAAGAC	1 cut(s)	342
BstX2I	RGATCY	4 cut(s)	194, 200, 206, 329
BstYI	RGATCY	4 cut(s)	194, 200, 206, 329
BsuI	GTATCC	2 cut(s)	82, 461
BsuRI	GGCC	2 cut(s)	81, 338
BtrI	CACGTC	1 cut(s)	380
BtsI	GCAGTG	2 cut(s)	304, 493
BtsIMutI	CAGTG	2 cut(s)	304, 493
Cac8I	GCNNGC	1 cut(s)	304
CaiI	CAGNNNCTG	1 cut(s)	191
Cfr13I	GGNCC	2 cut(s)	79, 336
CseI	GACGC	1 cut(s)	228
DdeI	CTNAG	1 cut(s)	214
DpnI	GATC	5 cut(s)	111, 196, 202, 208, 331
DpnII	GATC	5 cut(s)	109, 194, 200, 206, 329
DraIII	CACNNNGTG	1 cut(s)	371
DrdI	GACNNNNNNGTC	1 cut(s)	277
DseDI	GACNNNNNNGTC	1 cut(s)	277
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco24I	GRGCYC	2 cut(s)	392, 482
Eco31I	GGTCTC	1 cut(s)	285
Eco57I	CTGAAG	1 cut(s)	336
Eco88I	CYCGRG	2 cut(s)	333, 391
EcoT38I	GRGCYC	2 cut(s)	392, 482
FaiI	YATR	2 cut(s)	50, 453
FalI	AAGNNNNNCTT	4 cut(s)	235, 267, 256, 288
FaqI	GGGAC	1 cut(s)	156
FauI	CCCGC	1 cut(s)	401
Fnu4HI	GCNGC	2 cut(s)	6, 496
FriOI	GRGCYC	2 cut(s)	392, 482
Fsp4HI	GCNGC	2 cut(s)	6, 496
FspBI	CTAG	3 cut(s)	146, 158, 231
GluI	GCNGC	2 cut(s)	6, 496
GsuI	CTGGAG	1 cut(s)	420
HaeIII	GGCC	2 cut(s)	81, 338
HapII	CCGG	6 cut(s)	198, 204, 210, 222, 327, 339
HgaI	GACGC	1 cut(s)	228
HpaII	CCGG	6 cut(s)	198, 204, 210, 222, 327, 339
HphI	GGTGA	4 cut(s)	425, 455, 467, 485
Hpy166II	GTNNAC	1 cut(s)	377
Hpy188I	TCNGA	2 cut(s)	76, 310
Hpy188III	TCNNGA	4 cut(s)	192, 198, 204, 399
Hpy8I	GTNNAC	1 cut(s)	377
HpyAV	CCTTC	1 cut(s)	88
HpyCH4III	ACNGT	1 cut(s)	473
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	3 cut(s)	8, 89, 302
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 303, 492
HpyF3I	CTNAG	1 cut(s)	214
HpySE526I	ACGT	1 cut(s)	379
Kpn2I	TCCGGA	2 cut(s)	197, 203
Kzo9I	GATC	5 cut(s)	109, 194, 200, 206, 329
LguI	GCTCTTC	1 cut(s)	30
LmnI	GCTCC	2 cut(s)	131, 311
MaeI	CTAG	3 cut(s)	146, 158, 231
MaeII	ACGT	1 cut(s)	379
MalI	GATC	5 cut(s)	111, 196, 202, 208, 331
MboI	GATC	5 cut(s)	109, 194, 200, 206, 329
MboII	GAAGA	2 cut(s)	17, 342
MflI	RGATCY	4 cut(s)	194, 200, 206, 329
MhlI	GDGCHC	2 cut(s)	392, 482
MluCI	AATT	1 cut(s)	120
MroI	TCCGGA	2 cut(s)	197, 203
MseI	TTAA	1 cut(s)	66
MspI	CCGG	6 cut(s)	198, 204, 210, 222, 327, 339
MspR9I	CCNGG	1 cut(s)	340
Mva1269I	GAATGC	1 cut(s)	8
MwoI	GCNNNNNNNGC	3 cut(s)	29, 303, 492
NciI	CCSGG	1 cut(s)	340
NdeII	GATC	5 cut(s)	109, 194, 200, 206, 329
NlaIV	GGNNCC	5 cut(s)	196, 202, 208, 220, 307
NmeAIII	GCCGAG	1 cut(s)	107
PciSI	GCTCTTC	1 cut(s)	30
PctI	GAATGC	1 cut(s)	8
PkrI	GCNGC	2 cut(s)	7, 497
PspN4I	GGNNCC	5 cut(s)	196, 202, 208, 220, 307
PspPI	GGNCC	2 cut(s)	79, 336
PstNI	CAGNNNCTG	1 cut(s)	191
PsuI	RGATCY	4 cut(s)	194, 200, 206, 329
SapI	GCTCTTC	1 cut(s)	30
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	2 cut(s)	6, 496
Sau3AI	GATC	5 cut(s)	109, 194, 200, 206, 329
Sau96I	GGNCC	2 cut(s)	79, 336
ScrFI	CCNGG	1 cut(s)	340
SduI	GDGCHC	2 cut(s)	392, 482
Sse9I	AATT	1 cut(s)	120
SsiI	CCGC	2 cut(s)	225, 408
SspMI	CTAG	3 cut(s)	146, 158, 231
StyD4I	CCNGG	1 cut(s)	338
TaaI	ACNGT	1 cut(s)	473
TaiI	ACGT	1 cut(s)	382
TaqI	TCGA	1 cut(s)	269
TasI	AATT	1 cut(s)	120
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TscAI	CASTG	2 cut(s)	304, 493
TseI	GCWGC	2 cut(s)	5, 495
TspDTI	ATGAA	2 cut(s)	243, 309
TspRI	CASTG	2 cut(s)	304, 493
XspI	CTAG	3 cut(s)	146, 158, 231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.