Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007121

Physical Location & Seq

Genomic Coordinates Forward (+)

7349641 .. 7350492

Gene Structure 852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g12380.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGGTGATTACAGTTTGAAGTGCTTGTTCCTAGCTGGTTTGCTTGTTTCAACCTTTGCATTGCAACTTTCTGAAGGCCGAGTGGCAAGAAAAGACCTCGGGATAGACCTCGGAGGTGTTGGAGTTGGCATTGGTCTCGGTGGGAGTGGTTTAGGTGCCGGTGCAGGATCTGGGTCTGGGTCTGGATCCGGATCAAGTTCGGAGTCAAGTTCGAGCTCATATTCTTCCTCAAGGTCAAGTTCAGGGTCAGGATCATCGGGTGGAGGGTCTGAAGCTGGTTCTTCTGCTGGATCTTACGCTGGGTCTAGGGCTGGATCAGGCTCCAGGAATCAAGGCCATGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

115

Amino Acids

10.48

Weight (kDa)

7.92

Isoelectric Point (pI)

52.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30450 AT4G30460
fragaria_vesca	FvH4_2g18210 FvH4_2g18220 FvH4_3g12380
prunus_persica	Prupe.1G098800_v2.0.a1 Prupe.1G098900_v2.0.a1
pyrus_communis	pycom13g28760
rosa_chinensis	RchiOBHm_Chr4g0405081 RchiOBHm_Chr4g0405091
rosa_laevigata	RLG00000008875 RLG00000008876
rosa_roxburghii	Rroxscaffold_5G00349260
rosa_rugosa	Rorug04G0053500
rosa_samantha	Rh1AG384500 Rh4AG127900 Rh4AG128000 Rh4BG121700 Rh4CG135600 Rh4CG135700 Rh4CG136500 Rh4DG122100 Rh4DG122200
rosa_wichuraiana	Rw4G010360 Rw4G010370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	155
AccIII	TCCGGA	1 cut(s)	188
AclWI	GGATC	7 cut(s)	175, 180, 193, 199, 259, 298, 322
AcuI	CTGAAG	2 cut(s)	93, 291
AgsI	TTSAA	2 cut(s)	19, 51
AjnI	CCWGG	1 cut(s)	323
AluBI	AGCT	3 cut(s)	35, 216, 275
AluI	AGCT	3 cut(s)	35, 216, 275
Alw21I	GWGCWC	1 cut(s)	218
Alw26I	GTCTC	1 cut(s)	140
AlwI	GGATC	7 cut(s)	175, 180, 193, 199, 259, 298, 322
AlwNI	CAGNNNCTG	1 cut(s)	170
Ama87I	CYCGRG	1 cut(s)	98
Aor13HI	TCCGGA	1 cut(s)	188
AoxI	GGCC	2 cut(s)	76, 334
AsuHPI	GGTGA	1 cut(s)	17
AvaI	CYCGRG	1 cut(s)	98
BamHI	GGATCC	1 cut(s)	185
BanI	GGYRCC	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	218
Bbv12I	GWGCWC	1 cut(s)	218
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BciT130I	CCWGG	1 cut(s)	325
BcoDI	GTCTC	1 cut(s)	140
BfaI	CTAG	2 cut(s)	32, 306
Bme1390I	CCNGG	1 cut(s)	325
BmeT110I	CYCGRG	1 cut(s)	98
BmiI	GGNNCC	3 cut(s)	157, 187, 322
BmrFI	CCNGG	1 cut(s)	325
BpmI	CTGGAG	1 cut(s)	307
BpuEI	CTTGAG	1 cut(s)	214
BsaBI	GATNNNNATC	1 cut(s)	190
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	3 cut(s)	97, 109, 337
BsaWI	WCCGGW	1 cut(s)	188
Bse118I	RCCGGY	1 cut(s)	158
Bse3DI	GCAATG	1 cut(s)	59
Bse8I	GATNNNNATC	1 cut(s)	190
BseAI	TCCGGA	1 cut(s)	188
BseBI	CCWGG	1 cut(s)	325
BseDI	CCNNGG	3 cut(s)	97, 109, 337
BseJI	GATNNNNATC	1 cut(s)	190
BseMI	GCAATG	1 cut(s)	59
BseYI	CCCAGC	1 cut(s)	299
BsgI	GTGCAG	1 cut(s)	183
BshFI	GGCC	2 cut(s)	78, 336
BshNI	GGYRCC	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	218
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	2 cut(s)	159, 189
BsmAI	GTCTC	1 cut(s)	140
BsnI	GGCC	2 cut(s)	78, 336
Bso31I	GGTCTC	1 cut(s)	140
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	218
Bsp13I	TCCGGA	1 cut(s)	188
Bsp143I	GATC	6 cut(s)	167, 185, 191, 251, 290, 314
Bsp19I	CCATGG	1 cut(s)	337
BspANI	GGCC	2 cut(s)	78, 336
BspEI	TCCGGA	1 cut(s)	188
BspLI	GGNNCC	3 cut(s)	157, 187, 322
BspPI	GGATC	7 cut(s)	175, 180, 193, 199, 259, 298, 322
BspT107I	GGYRCC	1 cut(s)	155
BspTNI	GGTCTC	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	59
BsrFI	RCCGGY	1 cut(s)	158
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	3 cut(s)	97, 109, 337
BssMI	GATC	6 cut(s)	167, 185, 191, 251, 290, 314
BssT1I	CCWWGG	1 cut(s)	337
Bst2UI	CCWGG	1 cut(s)	325
Bst4CI	ACNGT	1 cut(s)	14
BstDSI	CCRYGG	1 cut(s)	337
BstKTI	GATC	6 cut(s)	170, 188, 194, 254, 293, 317
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	6 cut(s)	167, 185, 191, 251, 290, 314
BstNI	CCWGG	1 cut(s)	325
BstSCI	CCNGG	1 cut(s)	323
BstX2I	RGATCY	3 cut(s)	167, 185, 290
BstYI	RGATCY	3 cut(s)	167, 185, 290
BsuRI	GGCC	2 cut(s)	78, 336
BtgI	CCRYGG	1 cut(s)	337
CaiI	CAGNNNCTG	1 cut(s)	170
Cfr10I	RCCGGY	1 cut(s)	158
CviAII	CATG	1 cut(s)	338
CviJI	RGCY	7 cut(s)	35, 78, 216, 275, 311, 321, 336
CviKI_1	RGCY	7 cut(s)	35, 78, 216, 275, 311, 321, 336
DpnI	GATC	6 cut(s)	169, 187, 193, 253, 292, 316
DpnII	GATC	6 cut(s)	167, 185, 191, 251, 290, 314
Ecl136II	GAGCTC	1 cut(s)	216
Eco130I	CCWWGG	1 cut(s)	337
Eco24I	GRGCYC	1 cut(s)	218
Eco31I	GGTCTC	1 cut(s)	140
Eco53kI	GAGCTC	1 cut(s)	216
Eco57I	CTGAAG	2 cut(s)	93, 291
Eco88I	CYCGRG	1 cut(s)	98
EcoICRI	GAGCTC	1 cut(s)	216
EcoRII	CCWGG	1 cut(s)	323
EcoT14I	CCWWGG	1 cut(s)	337
EcoT38I	GRGCYC	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	337
FaeI	CATG	1 cut(s)	341
FaiI	YATR	2 cut(s)	220, 339
FatI	CATG	1 cut(s)	337
FriOI	GRGCYC	1 cut(s)	218
FspBI	CTAG	2 cut(s)	32, 306
GsaI	CCCAGC	1 cut(s)	303
GsuI	CTGGAG	1 cut(s)	307
HaeIII	GGCC	2 cut(s)	78, 336
HapII	CCGG	2 cut(s)	159, 189
Hin1II	CATG	1 cut(s)	341
HinfI	GANTC	2 cut(s)	203, 328
HpaII	CCGG	2 cut(s)	159, 189
HphI	GGTGA	1 cut(s)	17
Hpy188I	TCNGA	4 cut(s)	73, 113, 202, 271
Hpy188III	TCNNGA	4 cut(s)	100, 183, 189, 249
HpyAV	CCTTC	1 cut(s)	68
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4V	TGCA	3 cut(s)	59, 64, 164
Hsp92II	CATG	1 cut(s)	341
Kpn2I	TCCGGA	1 cut(s)	188
Kzo9I	GATC	6 cut(s)	167, 185, 191, 251, 290, 314
LmnI	GCTCC	1 cut(s)	326
MaeI	CTAG	2 cut(s)	32, 306
MalI	GATC	6 cut(s)	169, 187, 193, 253, 292, 316
MboI	GATC	6 cut(s)	167, 185, 191, 251, 290, 314
MboII	GAAGA	2 cut(s)	216, 273
MflI	RGATCY	3 cut(s)	167, 185, 290
MhlI	GDGCHC	1 cut(s)	218
MlyI	GAGTC	1 cut(s)	212
MmeI	TCCRAC	1 cut(s)	100
MnlI	CCTC	5 cut(s)	107, 107, 119, 238, 257
MroI	TCCGGA	1 cut(s)	188
MspI	CCGG	2 cut(s)	159, 189
MspR9I	CCNGG	1 cut(s)	325
MvaI	CCWGG	1 cut(s)	325
NcoI	CCATGG	1 cut(s)	337
NdeII	GATC	6 cut(s)	167, 185, 191, 251, 290, 314
NlaIII	CATG	1 cut(s)	341
NlaIV	GGNNCC	3 cut(s)	157, 187, 322
NmeAIII	GCCGAG	1 cut(s)	104
PfeI	GAWTC	1 cut(s)	328
PfoI	TCCNGGA	1 cut(s)	323
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
Psp124BI	GAGCTC	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	323
PspFI	CCCAGC	1 cut(s)	299
PspGI	CCWGG	1 cut(s)	323
PspN4I	GGNNCC	3 cut(s)	157, 187, 322
PstNI	CAGNNNCTG	1 cut(s)	170
PsuI	RGATCY	3 cut(s)	167, 185, 290
SacI	GAGCTC	1 cut(s)	218
Sau3AI	GATC	6 cut(s)	167, 185, 191, 251, 290, 314
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	325
SduI	GDGCHC	1 cut(s)	218
SetI	ASST	9 cut(s)	37, 56, 99, 111, 118, 157, 218, 236, 277
SmlI	CTYRAG	1 cut(s)	229
SmoI	CTYRAG	1 cut(s)	229
SspMI	CTAG	2 cut(s)	32, 306
SstI	GAGCTC	1 cut(s)	218
StyD4I	CCNGG	1 cut(s)	323
StyI	CCWWGG	1 cut(s)	337
TaaI	ACNGT	1 cut(s)	14
TaqI	TCGA	1 cut(s)	212
TfiI	GAWTC	1 cut(s)	328
XspI	CTAG	2 cut(s)	32, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.