Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0007121

Physical Location & Seq

Genomic Coordinates Forward (+)

20356063 .. 20357070

Gene Structure 1008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG121700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGCTGCATTCAAGTCAGTAGCTCTTCTTGCTTTGGTTGTTGTTGCTATGTCAATGTCGGGTATTAAGGTATCCGAGGGCCGAGTTGCAAGGAAGGATTTGGGTATTGATCTTGGAGGAATTGGGATTGGAGCAGGATTGGGACTCGGTTTAGGGCTAGGTGGAGGTGGAGGTGGCTCTGGGTCGGGGTCTGGATCCGGATCCGGCTCAGGTTCCAGCGGTTCTAGTTCTGCGTCAAGTTCAGCTTCATCAAGTTCAAGTTCGACTTCTGGGTCTGGTGGTGGAGGTAGCAGTGCAGGCTCCGAGGCAGGTTCATCTGCCGGATCTCGGGCCGGGTCGGGGTCTTCAGGGAAAAATACACAGGGTGGTGGACGTGGTTCCGGCTCGGGTTCTGGAGGGGGCGGGGGTTCGGGGAGGGGAAGTGGCTCTGGTAATGGTGAGGGTTATGGTGAGGGGCGTGGATACGGTGAGGGCTCTGGCAGTGGAGGCGGCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

165

Amino Acids

14.1

Weight (kDa)

9.69

Isoelectric Point (pI)

34.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30450 AT4G30460
fragaria_vesca	FvH4_2g18210 FvH4_2g18220 FvH4_3g12380
prunus_persica	Prupe.1G098800_v2.0.a1 Prupe.1G098900_v2.0.a1
pyrus_communis	pycom13g28760
rosa_chinensis	RchiOBHm_Chr4g0405081 RchiOBHm_Chr4g0405091
rosa_laevigata	RLG00000008875 RLG00000008876
rosa_roxburghii	Rroxscaffold_5G00349260
rosa_rugosa	Rorug04G0053500
rosa_samantha	Rh1AG384500 Rh4AG127900 Rh4AG128000 Rh4BG121700 Rh4CG135600 Rh4CG135700 Rh4CG136500 Rh4DG122100 Rh4DG122200
rosa_wichuraiana	Rw4G010360 Rw4G010370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	271
Acc36I	ACCTGC	1 cut(s)	299
AccIII	TCCGGA	1 cut(s)	197
AciI	CCGC	3 cut(s)	219, 402, 489
AclWI	GGATC	5 cut(s)	189, 195, 202, 208, 331
AcuI	CTGAAG	1 cut(s)	330
AdeI	CACNNNGTG	1 cut(s)	365
AfiI	CCNNNNNNNGG	2 cut(s)	327, 339
AgsI	TTSAA	2 cut(s)	13, 258
AjiI	CACGTC	1 cut(s)	374
AluBI	AGCT	2 cut(s)	23, 245
AluI	AGCT	2 cut(s)	23, 245
AlwI	GGATC	5 cut(s)	189, 195, 202, 208, 331
Ama87I	CYCGRG	2 cut(s)	327, 385
Aor13HI	TCCGGA	1 cut(s)	197
AoxI	GGCC	2 cut(s)	79, 330
ApeKI	GCWGC	1 cut(s)	5
AspS9I	GGNCC	2 cut(s)	79, 330
AsuC2I	CCSGG	1 cut(s)	334
AsuHPI	GGTGA	3 cut(s)	449, 461, 479
AvaI	CYCGRG	2 cut(s)	327, 385
BamHI	GGATCC	2 cut(s)	194, 200
BanII	GRGCYC	1 cut(s)	476
BbsI	GAAGAC	1 cut(s)	336
BciVI	GTATCC	2 cut(s)	82, 455
BcnI	CCSGG	1 cut(s)	334
BfaI	CTAG	2 cut(s)	158, 225
BfuAI	ACCTGC	1 cut(s)	299
BfuI	GTATCC	2 cut(s)	82, 455
BisI	GCNGC	2 cut(s)	6, 490
BlsI	GCNGC	2 cut(s)	7, 491
Bme1390I	CCNGG	1 cut(s)	334
BmeT110I	CYCGRG	2 cut(s)	327, 385
BmgBI	CACGTC	1 cut(s)	374
BmgT120I	GGNCC	2 cut(s)	79, 330
BmiI	GGNNCC	5 cut(s)	196, 202, 214, 301, 379
BmrFI	CCNGG	1 cut(s)	334
BpiI	GAAGAC	1 cut(s)	336
BpmI	CTGGAG	1 cut(s)	414
Bpu10I	CCTNAGC	1 cut(s)	208
BpuMI	CCSGG	1 cut(s)	334
BsaBI	GATNNNNATC	1 cut(s)	199
BsaJI	CCNNGG	2 cut(s)	75, 303
BsaWI	WCCGGW	1 cut(s)	197
BsaXI	ACNNNNNCTCC	2 cut(s)	406, 436
Bsc4I	CCNNNNNNNGG	2 cut(s)	327, 339
Bse8I	GATNNNNATC	1 cut(s)	199
BseAI	TCCGGA	1 cut(s)	197
BseDI	CCNNGG	2 cut(s)	75, 303
BseJI	GATNNNNATC	1 cut(s)	199
BseLI	CCNNNNNNNGG	2 cut(s)	327, 339
BseMII	CTCAG	1 cut(s)	222
BsgI	GTGCAG	1 cut(s)	315
BshFI	GGCC	2 cut(s)	81, 332
BsiHKCI	CYCGRG	2 cut(s)	327, 385
BsiSI	CCGG	5 cut(s)	198, 204, 321, 333, 381
BslFI	GGGAC	1 cut(s)	156
BslI	CCNNNNNNNGG	2 cut(s)	327, 339
BsmFI	GGGAC	1 cut(s)	156
BsmI	GAATGC	1 cut(s)	8
BsnI	GGCC	2 cut(s)	81, 332
BsoBI	CYCGRG	2 cut(s)	327, 385
Bsp1286I	GDGCHC	1 cut(s)	476
Bsp13I	TCCGGA	1 cut(s)	197
Bsp143I	GATC	4 cut(s)	109, 194, 200, 323
BspACI	CCGC	3 cut(s)	219, 402, 489
BspANI	GGCC	2 cut(s)	81, 332
BspCNI	CTCAG	1 cut(s)	221
BspEI	TCCGGA	1 cut(s)	197
BspLI	GGNNCC	5 cut(s)	196, 202, 214, 301, 379
BspMI	ACCTGC	1 cut(s)	299
BspPI	GGATC	5 cut(s)	189, 195, 202, 208, 331
BspQI	GCTCTTC	1 cut(s)	30
BssECI	CCNNGG	2 cut(s)	75, 303
BssMI	GATC	4 cut(s)	109, 194, 200, 323
Bst4CI	ACNGT	1 cut(s)	467
Bst6I	CTCTTC	1 cut(s)	30
BstC8I	GCNNGC	1 cut(s)	298
BstDEI	CTNAG	1 cut(s)	208
BstKTI	GATC	4 cut(s)	112, 197, 203, 326
BstMBI	GATC	4 cut(s)	109, 194, 200, 323
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 297, 486
BstSCI	CCNGG	1 cut(s)	332
BstV2I	GAAGAC	1 cut(s)	336
BstX2I	RGATCY	3 cut(s)	194, 200, 323
BstYI	RGATCY	3 cut(s)	194, 200, 323
BsuI	GTATCC	2 cut(s)	82, 455
BsuRI	GGCC	2 cut(s)	81, 332
BtrI	CACGTC	1 cut(s)	374
BtsI	GCAGTG	2 cut(s)	298, 487
BtsIMutI	CAGTG	2 cut(s)	298, 487
BveI	ACCTGC	1 cut(s)	299
Cac8I	GCNNGC	1 cut(s)	298
Cfr13I	GGNCC	2 cut(s)	79, 330
CseI	GACGC	1 cut(s)	222
DdeI	CTNAG	1 cut(s)	208
DpnI	GATC	4 cut(s)	111, 196, 202, 325
DpnII	GATC	4 cut(s)	109, 194, 200, 323
DraIII	CACNNNGTG	1 cut(s)	365
DrdI	GACNNNNNNGTC	1 cut(s)	271
DseDI	GACNNNNNNGTC	1 cut(s)	271
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	476
Eco57I	CTGAAG	1 cut(s)	330
Eco88I	CYCGRG	2 cut(s)	327, 385
EcoT38I	GRGCYC	1 cut(s)	476
FaiI	YATR	2 cut(s)	50, 447
FalI	AAGNNNNNCTT	4 cut(s)	229, 261, 250, 282
FaqI	GGGAC	1 cut(s)	156
FauI	CCCGC	1 cut(s)	395
Fnu4HI	GCNGC	2 cut(s)	6, 490
FriOI	GRGCYC	1 cut(s)	476
Fsp4HI	GCNGC	2 cut(s)	6, 490
FspBI	CTAG	2 cut(s)	158, 225
GluI	GCNGC	2 cut(s)	6, 490
GsuI	CTGGAG	1 cut(s)	414
HaeIII	GGCC	2 cut(s)	81, 332
HapII	CCGG	5 cut(s)	198, 204, 321, 333, 381
HgaI	GACGC	1 cut(s)	222
HinfI	GANTC	1 cut(s)	144
HpaII	CCGG	5 cut(s)	198, 204, 321, 333, 381
HphI	GGTGA	3 cut(s)	449, 461, 479
Hpy166II	GTNNAC	1 cut(s)	371
Hpy188I	TCNGA	2 cut(s)	76, 304
Hpy188III	TCNNGA	3 cut(s)	192, 198, 393
Hpy8I	GTNNAC	1 cut(s)	371
HpyAV	CCTTC	1 cut(s)	88
HpyCH4III	ACNGT	1 cut(s)	467
HpyCH4IV	ACGT	1 cut(s)	373
HpyCH4V	TGCA	3 cut(s)	8, 89, 296
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 297, 486
HpyF3I	CTNAG	1 cut(s)	208
HpySE526I	ACGT	1 cut(s)	373
Kpn2I	TCCGGA	1 cut(s)	197
Kzo9I	GATC	4 cut(s)	109, 194, 200, 323
LguI	GCTCTTC	1 cut(s)	30
LmnI	GCTCC	2 cut(s)	131, 305
MaeI	CTAG	2 cut(s)	158, 225
MaeII	ACGT	1 cut(s)	373
MalI	GATC	4 cut(s)	111, 196, 202, 325
MboI	GATC	4 cut(s)	109, 194, 200, 323
MboII	GAAGA	2 cut(s)	17, 336
MflI	RGATCY	3 cut(s)	194, 200, 323
MhlI	GDGCHC	1 cut(s)	476
MluCI	AATT	1 cut(s)	120
MlyI	GAGTC	1 cut(s)	138
MroI	TCCGGA	1 cut(s)	197
MseI	TTAA	1 cut(s)	66
MspA1I	CMGCKG	1 cut(s)	219
MspI	CCGG	5 cut(s)	198, 204, 321, 333, 381
MspR9I	CCNGG	1 cut(s)	334
Mva1269I	GAATGC	1 cut(s)	8
MwoI	GCNNNNNNNGC	3 cut(s)	29, 297, 486
NciI	CCSGG	1 cut(s)	334
NdeII	GATC	4 cut(s)	109, 194, 200, 323
NlaIV	GGNNCC	5 cut(s)	196, 202, 214, 301, 379
NmeAIII	GCCGAG	1 cut(s)	107
PciSI	GCTCTTC	1 cut(s)	30
PctI	GAATGC	1 cut(s)	8
PkrI	GCNGC	2 cut(s)	7, 491
PleI	GAGTC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	138
PspN4I	GGNNCC	5 cut(s)	196, 202, 214, 301, 379
PspPI	GGNCC	2 cut(s)	79, 330
PsuI	RGATCY	3 cut(s)	194, 200, 323
SapI	GCTCTTC	1 cut(s)	30
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	2 cut(s)	6, 490
Sau3AI	GATC	4 cut(s)	109, 194, 200, 323
Sau96I	GGNCC	2 cut(s)	79, 330
SchI	GAGTC	1 cut(s)	138
ScrFI	CCNGG	1 cut(s)	334
SduI	GDGCHC	1 cut(s)	476
Sse9I	AATT	1 cut(s)	120
SsiI	CCGC	3 cut(s)	219, 402, 489
SspMI	CTAG	2 cut(s)	158, 225
StyD4I	CCNGG	1 cut(s)	332
TaaI	ACNGT	1 cut(s)	467
TaiI	ACGT	1 cut(s)	376
TaqI	TCGA	1 cut(s)	263
TasI	AATT	1 cut(s)	120
TauI	GCSGC	1 cut(s)	492
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TscAI	CASTG	2 cut(s)	298, 487
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	237, 303
TspRI	CASTG	2 cut(s)	298, 487
XspI	CTAG	2 cut(s)	158, 225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.