FvH4_2g18220

Glycine-rich cell wall structural protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0007121
Physical Location & Seq
Reverse (-)
15603464 .. 15603970
507 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g18220.t1

Sequence Viewer

Length: 507 bp
ATGGCTGCATTCAAGTCAATAGCTCTTCTTGCGCTGCTTGTTGTTGCTATGTCATTGCCAGATATTAAGGTATCTGAAGGCCGAGTCGCAAGGAAGGATTTGGGTATCGATCTCGGAGGAGTTGGCATTGGAGTAGGAGTGGGACTAGGTTTAGGGCTAGGTGGAGGTGGAGGTGGCTCTGGTTCAGGGTCTGGATCCGGCTCCGGCTCAGGTTCGAGTGGTTCAAGTTCTGCGTCAAGTTCAGCTTCATCAAGTTCAAGTTCAAGTTCAAGTTCAAGGGGATCTGGTGGTGGAGGTAGCAGTGCAGGCTCCGAGGCAGGTTCATATGCCGGGTCTCGGGCCGGGTCAGGGTCTTCAGGGAAAAACTCACAAGGTGGTGGAGGTGGTAGTGGACGTGGTTCGGGCTCGGGTTCTGGAGGGGGCGGGGGAAGTGGCTCTGGTAATGGTGAGGGTCATGGTGAGGGGCGTGGATATGGTGAGGGGTCTGGCAGTGGAGGCGGGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

14.43

Weight (kDa)

9.3

Isoelectric Point (pI)

42.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 308
AciI CCGC 2 cut(s) 423, 498
AclWI GGATC 3 cut(s) 189, 202, 289
AcuI CTGAAG 2 cut(s) 96, 339
AdeI CACNNNGTG 1 cut(s) 374
AfiI CCNNNNNNNGG 2 cut(s) 336, 348
AgsI TTSAA 6 cut(s) 13, 225, 258, 264, 270, 276
AjiI CACGTC 1 cut(s) 395
AluBI AGCT 2 cut(s) 23, 245
AluI AGCT 2 cut(s) 23, 245
Alw26I GTCTC 1 cut(s) 339
AlwI GGATC 3 cut(s) 189, 202, 289
AlwNI CAGNNNCTG 1 cut(s) 191
Ama87I CYCGRG 2 cut(s) 336, 406
AoxI GGCC 2 cut(s) 79, 339
ApeKI GCWGC 2 cut(s) 5, 34
AspLEI GCGC 1 cut(s) 34
AspS9I GGNCC 1 cut(s) 339
AsuC2I CCSGG 2 cut(s) 331, 343
AsuHPI GGTGA 3 cut(s) 458, 470, 488
AvaI CYCGRG 2 cut(s) 336, 406
BamHI GGATCC 1 cut(s) 194
BanII GRGCYC 1 cut(s) 407
BbsI GAAGAC 1 cut(s) 345
BbvI GCAGC 1 cut(s) 21
BcnI CCSGG 2 cut(s) 331, 343
BcoDI GTCTC 1 cut(s) 339
BfaI CTAG 2 cut(s) 146, 158
BfuAI ACCTGC 1 cut(s) 308
BisI GCNGC 2 cut(s) 6, 35
BlsI GCNGC 2 cut(s) 7, 36
Bme1390I CCNGG 2 cut(s) 331, 343
BmeT110I CYCGRG 2 cut(s) 336, 406
BmgBI CACGTC 1 cut(s) 395
BmgT120I GGNCC 1 cut(s) 339
BmiI GGNNCC 3 cut(s) 196, 202, 310
BmrFI CCNGG 2 cut(s) 331, 343
BpiI GAAGAC 1 cut(s) 345
BpmI CTGGAG 1 cut(s) 435
Bpu10I CCTNAGC 1 cut(s) 208
BpuMI CCSGG 2 cut(s) 331, 343
Bsa29I ATCGAT 1 cut(s) 108
BsaI GGTCTC 1 cut(s) 339
BsaJI CCNNGG 1 cut(s) 312
BsaXI ACNNNNNCTCC 2 cut(s) 123, 153
Bsc4I CCNNNNNNNGG 2 cut(s) 336, 348
Bse3DI GCAATG 1 cut(s) 53
BseCI ATCGAT 1 cut(s) 108
BseDI CCNNGG 1 cut(s) 312
BseLI CCNNNNNNNGG 2 cut(s) 336, 348
BseMI GCAATG 1 cut(s) 53
BseMII CTCAG 1 cut(s) 222
BseRI GAGGAG 1 cut(s) 132
BseXI GCAGC 1 cut(s) 21
BsgI GTGCAG 1 cut(s) 324
BshFI GGCC 2 cut(s) 81, 341
BshVI ATCGAT 1 cut(s) 108
BsiHKCI CYCGRG 2 cut(s) 336, 406
BsiSI CCGG 4 cut(s) 198, 204, 330, 342
BslFI GGGAC 1 cut(s) 156
BslI CCNNNNNNNGG 2 cut(s) 336, 348
BsmAI GTCTC 1 cut(s) 339
BsmFI GGGAC 1 cut(s) 156
BsmI GAATGC 1 cut(s) 8
BsnI GGCC 2 cut(s) 81, 341
Bso31I GGTCTC 1 cut(s) 339
BsoBI CYCGRG 2 cut(s) 336, 406
Bsp1286I GDGCHC 1 cut(s) 407
Bsp143I GATC 3 cut(s) 109, 194, 281
BspACI CCGC 2 cut(s) 423, 498
BspANI GGCC 2 cut(s) 81, 341
BspCNI CTCAG 1 cut(s) 221
BspDI ATCGAT 1 cut(s) 108
BspLI GGNNCC 3 cut(s) 196, 202, 310
BspMI ACCTGC 1 cut(s) 308
BspPI GGATC 3 cut(s) 189, 202, 289
BspQI GCTCTTC 1 cut(s) 30
BspTNI GGTCTC 1 cut(s) 339
BsrDI GCAATG 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 312
BssMI GATC 3 cut(s) 109, 194, 281
Bst6I CTCTTC 1 cut(s) 30
BstC8I GCNNGC 1 cut(s) 307
BstDEI CTNAG 1 cut(s) 208
BstHHI GCGC 1 cut(s) 34
BstKTI GATC 3 cut(s) 112, 197, 284
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 3 cut(s) 109, 194, 281
BstMWI GCNNNNNNNGC 3 cut(s) 29, 306, 495
BstSCI CCNGG 2 cut(s) 329, 341
BstV1I GCAGC 1 cut(s) 21
BstV2I GAAGAC 1 cut(s) 345
BstX2I RGATCY 2 cut(s) 194, 281
BstYI RGATCY 2 cut(s) 194, 281
Bsu15I ATCGAT 1 cut(s) 108
BsuRI GGCC 2 cut(s) 81, 341
BsuTUI ATCGAT 1 cut(s) 108
BtrI CACGTC 1 cut(s) 395
BtsI GCAGTG 2 cut(s) 307, 496
BtsIMutI CAGTG 2 cut(s) 307, 496
BveI ACCTGC 1 cut(s) 308
Cac8I GCNNGC 1 cut(s) 307
CaiI CAGNNNCTG 1 cut(s) 191
CfoI GCGC 1 cut(s) 34
Cfr13I GGNCC 1 cut(s) 339
ClaI ATCGAT 1 cut(s) 108
CseI GACGC 1 cut(s) 222
CviAII CATG 1 cut(s) 455
DdeI CTNAG 1 cut(s) 208
DpnI GATC 3 cut(s) 111, 196, 283
DpnII GATC 3 cut(s) 109, 194, 281
DraIII CACNNNGTG 1 cut(s) 374
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco24I GRGCYC 1 cut(s) 407
Eco31I GGTCTC 1 cut(s) 339
Eco57I CTGAAG 2 cut(s) 96, 339
Eco88I CYCGRG 2 cut(s) 336, 406
EcoT38I GRGCYC 1 cut(s) 407
FaeI CATG 1 cut(s) 458
FaiI YATR 5 cut(s) 50, 325, 327, 456, 474
FalI AAGNNNNNCTT 2 cut(s) 229, 261
FaqI GGGAC 1 cut(s) 156
FatI CATG 1 cut(s) 454
FauI CCCGC 2 cut(s) 416, 491
FauNDI CATATG 1 cut(s) 325
Fnu4HI GCNGC 2 cut(s) 6, 35
FriOI GRGCYC 1 cut(s) 407
Fsp4HI GCNGC 2 cut(s) 6, 35
FspBI CTAG 2 cut(s) 146, 158
GlaI GCGC 1 cut(s) 33
GluI GCNGC 2 cut(s) 6, 35
GsuI CTGGAG 1 cut(s) 435
HaeIII GGCC 2 cut(s) 81, 341
HapII CCGG 4 cut(s) 198, 204, 330, 342
HgaI GACGC 1 cut(s) 222
HhaI GCGC 1 cut(s) 34
Hin1II CATG 1 cut(s) 458
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HinfI GANTC 1 cut(s) 84
HpaII CCGG 4 cut(s) 198, 204, 330, 342
HphI GGTGA 3 cut(s) 458, 470, 488
Hpy166II GTNNAC 1 cut(s) 392
Hpy188I TCNGA 3 cut(s) 76, 116, 313
Hpy188III TCNNGA 2 cut(s) 192, 414
Hpy8I GTNNAC 1 cut(s) 392
HpyAV CCTTC 2 cut(s) 71, 88
HpyCH4IV ACGT 1 cut(s) 394
HpyCH4V TGCA 2 cut(s) 8, 305
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 306, 495
HpyF3I CTNAG 1 cut(s) 208
HpySE526I ACGT 1 cut(s) 394
Hsp92II CATG 1 cut(s) 458
HspAI GCGC 1 cut(s) 32
Kzo9I GATC 3 cut(s) 109, 194, 281
LguI GCTCTTC 1 cut(s) 30
LmnI GCTCC 2 cut(s) 206, 314
Lsp1109I GCAGC 1 cut(s) 21
MaeI CTAG 2 cut(s) 146, 158
MaeII ACGT 1 cut(s) 394
MalI GATC 3 cut(s) 111, 196, 283
MboI GATC 3 cut(s) 109, 194, 281
MboII GAAGA 2 cut(s) 17, 345
MflI RGATCY 2 cut(s) 194, 281
MhlI GDGCHC 1 cut(s) 407
MlyI GAGTC 1 cut(s) 93
MseI TTAA 1 cut(s) 66
MspI CCGG 4 cut(s) 198, 204, 330, 342
MspR9I CCNGG 2 cut(s) 331, 343
Mva1269I GAATGC 1 cut(s) 8
MwoI GCNNNNNNNGC 3 cut(s) 29, 306, 495
NciI CCSGG 2 cut(s) 331, 343
NdeI CATATG 1 cut(s) 325
NdeII GATC 3 cut(s) 109, 194, 281
NlaIII CATG 1 cut(s) 458
NlaIV GGNNCC 3 cut(s) 196, 202, 310
NmeAIII GCCGAG 1 cut(s) 107
PciSI GCTCTTC 1 cut(s) 30
PctI GAATGC 1 cut(s) 8
PkrI GCNGC 2 cut(s) 7, 36
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
PspN4I GGNNCC 3 cut(s) 196, 202, 310
PspPI GGNCC 1 cut(s) 339
PstNI CAGNNNCTG 1 cut(s) 191
PsuI RGATCY 2 cut(s) 194, 281
SapI GCTCTTC 1 cut(s) 30
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 2 cut(s) 6, 35
Sau3AI GATC 3 cut(s) 109, 194, 281
Sau96I GGNCC 1 cut(s) 339
SchI GAGTC 1 cut(s) 93
ScrFI CCNGG 2 cut(s) 331, 343
SduI GDGCHC 1 cut(s) 407
SsiI CCGC 2 cut(s) 423, 498
SspMI CTAG 2 cut(s) 146, 158
StyD4I CCNGG 2 cut(s) 329, 341
TaiI ACGT 1 cut(s) 397
TaqI TCGA 2 cut(s) 108, 215
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 2 cut(s) 307, 496
TseI GCWGC 2 cut(s) 5, 34
TspDTI ATGAA 2 cut(s) 237, 312
TspRI CASTG 2 cut(s) 307, 496
XspI CTAG 2 cut(s) 146, 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.