Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0007121

Physical Location & Seq

Genomic Coordinates Forward (+)

26865251 .. 26866353

Gene Structure 1103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG135700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGGTAATTTCAGTTTGAAGTGCTTGTTCTTAGCAGGTTTGCTGATTTCAACCTTTGCCATGCAACTTTCCGAAGGCCGAGTGGCAAGAAAGGACCTCGGGGTAGACCTCGGTGGTGTTGGGGCTAGTGTCGGTACCGGAATGGGCCTTGGGCTTGGTGGGAGTGGTTCGAGCGCCGGTGTAGGATCTGGCTCTGGCTCCGGGTCTGGGTCAAGTTCGGAGTCAAGTTCAAGCTCATATTCTTCCTCAAGGTCAAGTTCAAGGTCAGGATCATCGGGTGGGGGCTCTGAAGCTGGTTCTTCTGCTGGATCTTATGCCGGGTCTAGGGCTGGGTCTGGCTCTGGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

116

Amino Acids

10.64

Weight (kDa)

9.1

Isoelectric Point (pI)

49.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30450 AT4G30460
fragaria_vesca	FvH4_2g18210 FvH4_2g18220 FvH4_3g12380
prunus_persica	Prupe.1G098800_v2.0.a1 Prupe.1G098900_v2.0.a1
pyrus_communis	pycom13g28760
rosa_chinensis	RchiOBHm_Chr4g0405081 RchiOBHm_Chr4g0405091
rosa_laevigata	RLG00000008875 RLG00000008876
rosa_roxburghii	Rroxscaffold_5G00349260
rosa_rugosa	Rorug04G0053500
rosa_samantha	Rh1AG384500 Rh4AG127900 Rh4AG128000 Rh4BG121700 Rh4CG135600 Rh4CG135700 Rh4CG136500 Rh4DG122100 Rh4DG122200
rosa_wichuraiana	Rw4G010360 Rw4G010370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	26
Acc65I	GGTACC	1 cut(s)	134
AccB1I	GGYRCC	1 cut(s)	134
AccI	GTMKAC	1 cut(s)	105
AclWI	GGATC	3 cut(s)	193, 277, 316
AcuI	CTGAAG	1 cut(s)	309
AfaI	GTAC	1 cut(s)	136
AfiI	CCNNNNNNNGG	2 cut(s)	207, 324
AgsI	TTSAA	4 cut(s)	19, 51, 231, 261
AluBI	AGCT	2 cut(s)	234, 293
AluI	AGCT	2 cut(s)	234, 293
AlwI	GGATC	3 cut(s)	193, 277, 316
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	2 cut(s)	76, 145
Asp718I	GGTACC	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	176
AspS9I	GGNCC	2 cut(s)	94, 145
AsuC2I	CCSGG	2 cut(s)	202, 319
AvaI	CYCGRG	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	94
BanI	GGYRCC	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	287
BcnI	CCSGG	2 cut(s)	202, 319
BfaI	CTAG	2 cut(s)	126, 324
BfoI	RGCGCY	1 cut(s)	177
BfuAI	ACCTGC	1 cut(s)	26
Bme1390I	CCNGG	2 cut(s)	202, 319
Bme18I	GGWCC	1 cut(s)	94
BmeT110I	CYCGRG	1 cut(s)	98
BmgT120I	GGNCC	2 cut(s)	94, 145
BmiI	GGNNCC	2 cut(s)	136, 199
BmrFI	CCNGG	2 cut(s)	202, 319
BpuEI	CTTGAG	1 cut(s)	232
BpuMI	CCSGG	2 cut(s)	202, 319
BsaJI	CCNNGG	3 cut(s)	97, 109, 148
BsaWI	WCCGGW	1 cut(s)	137
Bsc4I	CCNNNNNNNGG	2 cut(s)	207, 324
Bse118I	RCCGGY	1 cut(s)	176
BseDI	CCNNGG	3 cut(s)	97, 109, 148
BseLI	CCNNNNNNNGG	2 cut(s)	207, 324
BseYI	CCCAGC	1 cut(s)	329
BshFI	GGCC	2 cut(s)	78, 147
BshNI	GGYRCC	1 cut(s)	134
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	4 cut(s)	138, 177, 201, 318
BslI	CCNNNNNNNGG	2 cut(s)	207, 324
BsnI	GGCC	2 cut(s)	78, 147
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp143I	GATC	3 cut(s)	185, 269, 308
BspANI	GGCC	2 cut(s)	78, 147
BspLI	GGNNCC	2 cut(s)	136, 199
BspMI	ACCTGC	1 cut(s)	26
BspPI	GGATC	3 cut(s)	193, 277, 316
BspT107I	GGYRCC	1 cut(s)	134
BsrFI	RCCGGY	1 cut(s)	176
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	3 cut(s)	97, 109, 148
BssMI	GATC	3 cut(s)	185, 269, 308
BssT1I	CCWWGG	1 cut(s)	148
BstDEI	CTNAG	1 cut(s)	31
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	3 cut(s)	188, 272, 311
BstMBI	GATC	3 cut(s)	185, 269, 308
BstSCI	CCNGG	2 cut(s)	200, 317
BstX2I	RGATCY	2 cut(s)	185, 308
BstYI	RGATCY	2 cut(s)	185, 308
BsuRI	GGCC	2 cut(s)	78, 147
BveI	ACCTGC	1 cut(s)	26
CfoI	GCGC	1 cut(s)	176
Cfr10I	RCCGGY	1 cut(s)	176
Cfr13I	GGNCC	2 cut(s)	94, 145
Csp6I	GTAC	1 cut(s)	135
CviAII	CATG	1 cut(s)	61
CviQI	GTAC	1 cut(s)	135
DdeI	CTNAG	1 cut(s)	31
DpnI	GATC	3 cut(s)	187, 271, 310
DpnII	GATC	3 cut(s)	185, 269, 308
Eco130I	CCWWGG	1 cut(s)	148
Eco24I	GRGCYC	1 cut(s)	287
Eco47I	GGWCC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	309
Eco88I	CYCGRG	1 cut(s)	98
EcoO109I	RGGNCCY	1 cut(s)	94
EcoT14I	CCWWGG	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	287
ErhI	CCWWGG	1 cut(s)	148
FaeI	CATG	1 cut(s)	64
FaiI	YATR	3 cut(s)	62, 238, 315
FatI	CATG	1 cut(s)	60
FblI	GTMKAC	1 cut(s)	105
FriOI	GRGCYC	1 cut(s)	287
FspBI	CTAG	2 cut(s)	126, 324
GlaI	GCGC	1 cut(s)	175
GsaI	CCCAGC	1 cut(s)	333
HaeII	RGCGCY	1 cut(s)	177
HaeIII	GGCC	2 cut(s)	78, 147
HapII	CCGG	4 cut(s)	138, 177, 201, 318
HhaI	GCGC	1 cut(s)	176
Hin1II	CATG	1 cut(s)	64
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HinfI	GANTC	1 cut(s)	221
HpaII	CCGG	4 cut(s)	138, 177, 201, 318
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	3 cut(s)	73, 220, 289
Hpy188III	TCNNGA	2 cut(s)	267, 342
Hpy8I	GTNNAC	1 cut(s)	106
HpyAV	CCTTC	1 cut(s)	68
HpyCH4V	TGCA	1 cut(s)	64
HpyF3I	CTNAG	1 cut(s)	31
Hsp92II	CATG	1 cut(s)	64
HspAI	GCGC	1 cut(s)	174
KpnI	GGTACC	1 cut(s)	138
Kzo9I	GATC	3 cut(s)	185, 269, 308
LmnI	GCTCC	1 cut(s)	203
MaeI	CTAG	2 cut(s)	126, 324
MalI	GATC	3 cut(s)	187, 271, 310
MboI	GATC	3 cut(s)	185, 269, 308
MboII	GAAGA	2 cut(s)	234, 291
MflI	RGATCY	2 cut(s)	185, 308
MhlI	GDGCHC	1 cut(s)	287
MluCI	AATT	2 cut(s)	7, 346
MlyI	GAGTC	1 cut(s)	230
MnlI	CCTC	3 cut(s)	107, 119, 256
MseI	TTAA	1 cut(s)	349
MspI	CCGG	4 cut(s)	138, 177, 201, 318
MspR9I	CCNGG	2 cut(s)	202, 319
NciI	CCSGG	2 cut(s)	202, 319
NdeII	GATC	3 cut(s)	185, 269, 308
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	2 cut(s)	136, 199
NmeAIII	GCCGAG	1 cut(s)	104
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
PpuMI	RGGWCCY	1 cut(s)	94
Psp5II	RGGWCCY	1 cut(s)	94
PspFI	CCCAGC	1 cut(s)	329
PspN4I	GGNNCC	2 cut(s)	136, 199
PspPI	GGNCC	2 cut(s)	94, 145
PspPPI	RGGWCCY	1 cut(s)	94
PsuI	RGATCY	2 cut(s)	185, 308
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	349
Sau3AI	GATC	3 cut(s)	185, 269, 308
Sau96I	GGNCC	2 cut(s)	94, 145
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	2 cut(s)	202, 319
SduI	GDGCHC	1 cut(s)	287
SetI	ASST	8 cut(s)	40, 56, 99, 111, 236, 254, 266, 295
SgrAI	CRCCGGYG	1 cut(s)	176
SinI	GGWCC	1 cut(s)	94
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
Sse9I	AATT	2 cut(s)	7, 346
SspMI	CTAG	2 cut(s)	126, 324
StyD4I	CCNGG	2 cut(s)	200, 317
StyI	CCWWGG	1 cut(s)	148
TaqI	TCGA	1 cut(s)	170
TasI	AATT	2 cut(s)	7, 346
Tru1I	TTAA	1 cut(s)	349
Tru9I	TTAA	1 cut(s)	349
VpaK11BI	GGWCC	1 cut(s)	94
XmiI	GTMKAC	1 cut(s)	105
XspI	CTAG	2 cut(s)	126, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.