Prupe.1G098800_v2.0.a1

Glycine-rich cell wall structural protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
7892916 .. 7894209
1294 bp
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UTR
Exon/CDS
Intron
Prupe.1G098800.1

Sequence Viewer

Length: 474 bp
ATGGCTCCATTCAAGTCACTAGCTCTTGTTGCTTTGCTTGTTGGTATCTCCTTGTCAGCTATTAATGCATCAGAAGGCCGAGTTGCTAGGAAGGATTTAGGTGTGGATCTTGGAGGAATTGGGGTTGGAGGAGGAGTAGGCCTGGGTATAGGACTTGGAGGAAGCGGAAGTGGATCCGGGGCAGGGTCGGGATCCGGGTCCGGGGGAAGTAGTTCTTCTTCGAGTTCAGCCTCATCGAGTGCTAGTTCGAGTTCAGGGTCAGGCGACGCAGGCTCCGAGGCAGGGTCATCTGCAGGGTCTCGGGCCTCGTCAGGGTCAGGGAGAGGTGCTCGAGGCAGTGGTGGCGGGCGAGGTGGGGGTTCGGGGTATGGACGTGGGGAGGGTTCGGGCCGGGGCAGTGGCGAGGGTAACGGTGAGGGTCATGGGGAAGGCCGTGGCTATGGTGAGGGTTATGGCAGTGGAGGCGGAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

13.75

Weight (kDa)

8.16

Isoelectric Point (pI)

23.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 165, 345, 465
AclWI GGATC 5 cut(s) 114, 168, 181, 186, 199
AfiI CCNNNNNNNGG 4 cut(s) 183, 201, 282, 312
AgsI TTSAA 1 cut(s) 13
AjiI CACGTC 1 cut(s) 374
AjnI CCWGG 1 cut(s) 141
AluBI AGCT 2 cut(s) 23, 59
AluI AGCT 2 cut(s) 23, 59
Alw21I GWGCWC 1 cut(s) 331
Alw26I GTCTC 1 cut(s) 303
AlwI GGATC 5 cut(s) 114, 168, 181, 186, 199
Ama87I CYCGRG 2 cut(s) 300, 330
AoxI GGCC 5 cut(s) 76, 139, 303, 388, 430
AseI ATTAAT 1 cut(s) 63
Asp700I GAANNNNTTC 1 cut(s) 211
AspS9I GGNCC 3 cut(s) 198, 303, 388
AsuC2I CCSGG 4 cut(s) 178, 196, 202, 392
AsuHPI GGTGA 2 cut(s) 425, 455
AvaI CYCGRG 2 cut(s) 300, 330
AvaII GGWCC 1 cut(s) 198
BamHI GGATCC 2 cut(s) 173, 191
BarI GAAGNNNNNNTAC 2 cut(s) 202, 234
Bbv12I GWGCWC 1 cut(s) 331
BceAI ACGGC 1 cut(s) 417
BciT130I CCWGG 1 cut(s) 143
BcnI CCSGG 4 cut(s) 178, 196, 202, 392
BcoDI GTCTC 1 cut(s) 303
BfaI CTAG 3 cut(s) 20, 87, 243
BfmI CTRYAG 1 cut(s) 291
Bme1390I CCNGG 5 cut(s) 143, 178, 196, 202, 392
Bme18I GGWCC 1 cut(s) 198
BmeT110I CYCGRG 2 cut(s) 300, 330
BmgBI CACGTC 1 cut(s) 374
BmgT120I GGNCC 3 cut(s) 198, 303, 388
BmiI GGNNCC 5 cut(s) 6, 175, 193, 199, 274
BmrFI CCNGG 5 cut(s) 143, 178, 196, 202, 392
BmsI GCATC 1 cut(s) 77
BplI GAGNNNNNCTC 2 cut(s) 313, 345
BpuMI CCSGG 4 cut(s) 178, 196, 202, 392
BsaI GGTCTC 1 cut(s) 303
BsaJI CCNNGG 6 cut(s) 142, 177, 201, 276, 391, 433
BsaXI ACNNNNNCTCC 4 cut(s) 120, 150, 257, 287
Bsc4I CCNNNNNNNGG 4 cut(s) 183, 201, 282, 312
BseBI CCWGG 1 cut(s) 143
BseDI CCNNGG 6 cut(s) 142, 177, 201, 276, 391, 433
BseLI CCNNNNNNNGG 4 cut(s) 183, 201, 282, 312
BseRI GAGGAG 2 cut(s) 144, 147
BshFI GGCC 5 cut(s) 78, 141, 305, 390, 432
BsiHKAI GWGCWC 1 cut(s) 331
BsiHKCI CYCGRG 2 cut(s) 300, 330
BsiSI CCGG 4 cut(s) 177, 195, 201, 391
BslI CCNNNNNNNGG 4 cut(s) 183, 201, 282, 312
BsmAI GTCTC 1 cut(s) 303
BsnI GGCC 5 cut(s) 78, 141, 305, 390, 432
Bso31I GGTCTC 1 cut(s) 303
BsoBI CYCGRG 2 cut(s) 300, 330
Bsp1286I GDGCHC 1 cut(s) 331
Bsp143I GATC 3 cut(s) 106, 173, 191
BspACI CCGC 3 cut(s) 165, 345, 465
BspANI GGCC 5 cut(s) 78, 141, 305, 390, 432
BspLI GGNNCC 5 cut(s) 6, 175, 193, 199, 274
BspMAI CTGCAG 1 cut(s) 295
BspPI GGATC 5 cut(s) 114, 168, 181, 186, 199
BspTNI GGTCTC 1 cut(s) 303
BssECI CCNNGG 6 cut(s) 142, 177, 201, 276, 391, 433
BssMI GATC 3 cut(s) 106, 173, 191
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 1 cut(s) 413
BstC8I GCNNGC 2 cut(s) 271, 347
BstDSI CCRYGG 1 cut(s) 433
BstKTI GATC 3 cut(s) 109, 176, 194
BstMAI GTCTC 1 cut(s) 303
BstMBI GATC 3 cut(s) 106, 173, 191
BstMWI GCNNNNNNNGC 5 cut(s) 29, 65, 270, 342, 462
BstNI CCWGG 1 cut(s) 143
BstSCI CCNGG 5 cut(s) 141, 176, 194, 200, 390
BstSFI CTRYAG 1 cut(s) 291
BstX2I RGATCY 3 cut(s) 106, 173, 191
BstYI RGATCY 3 cut(s) 106, 173, 191
BsuRI GGCC 5 cut(s) 78, 141, 305, 390, 432
BtgI CCRYGG 1 cut(s) 433
BtrI CACGTC 1 cut(s) 374
BtsI GCAGTG 3 cut(s) 343, 403, 463
BtsIMutI CAGTG 3 cut(s) 343, 403, 463
Cac8I GCNNGC 2 cut(s) 271, 347
Cfr13I GGNCC 3 cut(s) 198, 303, 388
CseI GACGC 1 cut(s) 275
CviAII CATG 1 cut(s) 422
DpnI GATC 3 cut(s) 108, 175, 193
DpnII GATC 3 cut(s) 106, 173, 191
Eco147I AGGCCT 1 cut(s) 141
Eco31I GGTCTC 1 cut(s) 303
Eco47I GGWCC 1 cut(s) 198
Eco88I CYCGRG 2 cut(s) 300, 330
EcoRII CCWGG 1 cut(s) 141
EcoT22I ATGCAT 1 cut(s) 70
FaeI CATG 1 cut(s) 425
FaiI YATR 5 cut(s) 149, 369, 423, 441, 453
FalI AAGNNNNNCTT 2 cut(s) 199, 231
FatI CATG 1 cut(s) 421
FauI CCCGC 1 cut(s) 338
FspBI CTAG 3 cut(s) 20, 87, 243
HaeIII GGCC 5 cut(s) 78, 141, 305, 390, 432
HapII CCGG 4 cut(s) 177, 195, 201, 391
HgaI GACGC 1 cut(s) 275
Hin1II CATG 1 cut(s) 425
HpaII CCGG 4 cut(s) 177, 195, 201, 391
HphI GGTGA 2 cut(s) 425, 455
Hpy188I TCNGA 2 cut(s) 73, 277
Hpy188III TCNNGA 1 cut(s) 189
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 3 cut(s) 68, 85, 422
HpyCH4III ACNGT 1 cut(s) 413
HpyCH4IV ACGT 1 cut(s) 373
HpyCH4V TGCA 2 cut(s) 68, 293
HpyF10VI GCNNNNNNNGC 5 cut(s) 29, 65, 270, 342, 462
HpySE526I ACGT 1 cut(s) 373
Hsp92II CATG 1 cut(s) 425
Kzo9I GATC 3 cut(s) 106, 173, 191
LmnI GCTCC 2 cut(s) 10, 278
LweI GCATC 1 cut(s) 77
MaeI CTAG 3 cut(s) 20, 87, 243
MaeII ACGT 1 cut(s) 373
MaeIII GTNAC 2 cut(s) 15, 407
MalI GATC 3 cut(s) 108, 175, 193
MboI GATC 3 cut(s) 106, 173, 191
MboII GAAGA 2 cut(s) 207, 210
MflI RGATCY 3 cut(s) 106, 173, 191
MhlI GDGCHC 1 cut(s) 331
MluCI AATT 1 cut(s) 117
MmeI TCCRAC 1 cut(s) 106
Mph1103I ATGCAT 1 cut(s) 70
MroXI GAANNNNTTC 1 cut(s) 211
MseI TTAA 1 cut(s) 63
MspI CCGG 4 cut(s) 177, 195, 201, 391
MspR9I CCNGG 5 cut(s) 143, 178, 196, 202, 392
MvaI CCWGG 1 cut(s) 143
MwoI GCNNNNNNNGC 5 cut(s) 29, 65, 270, 342, 462
NciI CCSGG 4 cut(s) 178, 196, 202, 392
NdeII GATC 3 cut(s) 106, 173, 191
NlaIII CATG 1 cut(s) 425
NlaIV GGNNCC 5 cut(s) 6, 175, 193, 199, 274
NmeAIII GCCGAG 1 cut(s) 104
NmuCI GTSAC 1 cut(s) 15
NsiI ATGCAT 1 cut(s) 70
PaeR7I CTCGAG 1 cut(s) 330
PceI AGGCCT 1 cut(s) 141
PcsI WCGNNNNNNNCGW 1 cut(s) 273
PdmI GAANNNNTTC 1 cut(s) 211
PshBI ATTAAT 1 cut(s) 63
Psp6I CCWGG 1 cut(s) 141
PspGI CCWGG 1 cut(s) 141
PspN4I GGNNCC 5 cut(s) 6, 175, 193, 199, 274
PspPI GGNCC 3 cut(s) 198, 303, 388
PspXI VCTCGAGB 1 cut(s) 330
PstI CTGCAG 1 cut(s) 295
PsuI RGATCY 3 cut(s) 106, 173, 191
SaqAI TTAA 1 cut(s) 63
Sau3AI GATC 3 cut(s) 106, 173, 191
Sau96I GGNCC 3 cut(s) 198, 303, 388
ScrFI CCNGG 5 cut(s) 143, 178, 196, 202, 392
SduI GDGCHC 1 cut(s) 331
SetI ASST 6 cut(s) 25, 61, 103, 328, 355, 376
SfaNI GCATC 1 cut(s) 77
SfcI CTRYAG 1 cut(s) 291
Sfr274I CTCGAG 1 cut(s) 330
SinI GGWCC 1 cut(s) 198
SlaI CTCGAG 1 cut(s) 330
SmlI CTYRAG 1 cut(s) 330
SmoI CTYRAG 1 cut(s) 330
Sse9I AATT 1 cut(s) 117
SseBI AGGCCT 1 cut(s) 141
SsiI CCGC 3 cut(s) 165, 345, 465
SspMI CTAG 3 cut(s) 20, 87, 243
StuI AGGCCT 1 cut(s) 141
StyD4I CCNGG 5 cut(s) 141, 176, 194, 200, 390
TaaI ACNGT 1 cut(s) 413
TaiI ACGT 1 cut(s) 376
TaqI TCGA 4 cut(s) 221, 236, 248, 331
TasI AATT 1 cut(s) 117
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 3 cut(s) 343, 403, 463
TseFI GTSAC 1 cut(s) 15
Tsp45I GTSAC 1 cut(s) 15
TspRI CASTG 3 cut(s) 343, 403, 463
VpaK11BI GGWCC 1 cut(s) 198
VspI ATTAAT 1 cut(s) 63
XhoI CTCGAG 1 cut(s) 330
XmnI GAANNNNTTC 1 cut(s) 211
XspI CTAG 3 cut(s) 20, 87, 243
Zsp2I ATGCAT 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.