Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0007121

Physical Location & Seq

Genomic Coordinates Forward (+)

23990278 .. 23990906

Gene Structure 629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G010360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCTGCATTCAAGTCAGTAGCTCTTCTTGCTTTGGTTGTTGTTGCTATGTCAATGTCGGGTATTAAGGTATCCGAGGGCCGAGTTGCAAGGAAGGATTTGGGTATTGATCTTGGAGGAATTGGGATTGGAGCAGGAGTGGGACTAGGTTTAGGGCTAGGTGGAGGTCAAGGTGGCTCTGGGTCAGGGTCTGGATCCGGCTCAGGTTCCGGCGGTTCTAGTTCTGCGTCAAGTTCAGCTTCATCAAGTTCAAGTTCGACTTCTGGGTCTCGTGGTGGAGGTAGCAGTGCAGGCTCCGAGGCAAGTTCATCTGCCGGATCTCGGGCCGGGTCGGGGTCTTCAGGGAAAAATACACAGGGTGGTGGACGTGGTTCGGGCTCGGGTTCTGGAGGGGGCGGGGGTGAGGGGAGGGGAAGTGGCTCTGGTAATGGTGACGGTTATGGTGAGGGGCGTGGATACGGTGAGGGCTCTGGCAGTGGAGGCAGCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

14.17

Weight (kDa)

9.69

Isoelectric Point (pI)

33.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30450 AT4G30460
fragaria_vesca	FvH4_2g18210 FvH4_2g18220 FvH4_3g12380
prunus_persica	Prupe.1G098800_v2.0.a1 Prupe.1G098900_v2.0.a1
pyrus_communis	pycom13g28760
rosa_chinensis	RchiOBHm_Chr4g0405081 RchiOBHm_Chr4g0405091
rosa_laevigata	RLG00000008875 RLG00000008876
rosa_roxburghii	Rroxscaffold_5G00349260
rosa_rugosa	Rorug04G0053500
rosa_samantha	Rh1AG384500 Rh4AG127900 Rh4AG128000 Rh4BG121700 Rh4CG135600 Rh4CG135700 Rh4CG136500 Rh4DG122100 Rh4DG122200
rosa_wichuraiana	Rw4G010360 Rw4G010370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	265
AciI	CCGC	2 cut(s)	213, 396
AclWI	GGATC	3 cut(s)	189, 202, 325
AcuI	CTGAAG	1 cut(s)	324
AdeI	CACNNNGTG	1 cut(s)	359
AfiI	CCNNNNNNNGG	2 cut(s)	321, 333
AgsI	TTSAA	2 cut(s)	13, 252
AjiI	CACGTC	1 cut(s)	368
AluBI	AGCT	2 cut(s)	23, 239
AluI	AGCT	2 cut(s)	23, 239
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	3 cut(s)	189, 202, 325
AlwNI	CAGNNNCTG	1 cut(s)	191
Ama87I	CYCGRG	2 cut(s)	321, 379
AoxI	GGCC	2 cut(s)	79, 324
ApeKI	GCWGC	2 cut(s)	5, 483
AspS9I	GGNCC	2 cut(s)	79, 324
AsuC2I	CCSGG	1 cut(s)	328
AsuHPI	GGTGA	4 cut(s)	413, 443, 455, 473
AvaI	CYCGRG	2 cut(s)	321, 379
BamHI	GGATCC	1 cut(s)	194
BanII	GRGCYC	2 cut(s)	380, 470
BauI	CACGAG	1 cut(s)	270
BbsI	GAAGAC	1 cut(s)	330
BciVI	GTATCC	2 cut(s)	82, 449
BcnI	CCSGG	1 cut(s)	328
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	3 cut(s)	146, 158, 219
BfuI	GTATCC	2 cut(s)	82, 449
BisI	GCNGC	2 cut(s)	6, 484
BlsI	GCNGC	2 cut(s)	7, 485
Bme1390I	CCNGG	1 cut(s)	328
BmeT110I	CYCGRG	2 cut(s)	321, 379
BmgBI	CACGTC	1 cut(s)	368
BmgT120I	GGNCC	2 cut(s)	79, 324
BmiI	GGNNCC	3 cut(s)	196, 208, 295
BmrFI	CCNGG	1 cut(s)	328
BpiI	GAAGAC	1 cut(s)	330
BpmI	CTGGAG	1 cut(s)	408
Bpu10I	CCTNAGC	1 cut(s)	202
BpuMI	CCSGG	1 cut(s)	328
BsaI	GGTCTC	1 cut(s)	273
BsaJI	CCNNGG	2 cut(s)	75, 297
BsaXI	ACNNNNNCTCC	4 cut(s)	123, 153, 400, 430
Bsc4I	CCNNNNNNNGG	2 cut(s)	321, 333
BseDI	CCNNGG	2 cut(s)	75, 297
BseLI	CCNNNNNNNGG	2 cut(s)	321, 333
BseMII	CTCAG	1 cut(s)	216
BsgI	GTGCAG	1 cut(s)	309
BshFI	GGCC	2 cut(s)	81, 326
BsiHKCI	CYCGRG	2 cut(s)	321, 379
BsiSI	CCGG	4 cut(s)	198, 210, 315, 327
BslFI	GGGAC	1 cut(s)	156
BslI	CCNNNNNNNGG	2 cut(s)	321, 333
BsmAI	GTCTC	1 cut(s)	273
BsmFI	GGGAC	1 cut(s)	156
BsmI	GAATGC	1 cut(s)	8
BsnI	GGCC	2 cut(s)	81, 326
Bso31I	GGTCTC	1 cut(s)	273
BsoBI	CYCGRG	2 cut(s)	321, 379
Bsp1286I	GDGCHC	2 cut(s)	380, 470
Bsp143I	GATC	3 cut(s)	109, 194, 317
BspACI	CCGC	2 cut(s)	213, 396
BspANI	GGCC	2 cut(s)	81, 326
BspCNI	CTCAG	1 cut(s)	215
BspLI	GGNNCC	3 cut(s)	196, 208, 295
BspPI	GGATC	3 cut(s)	189, 202, 325
BspQI	GCTCTTC	1 cut(s)	30
BspTNI	GGTCTC	1 cut(s)	273
BssECI	CCNNGG	2 cut(s)	75, 297
BssMI	GATC	3 cut(s)	109, 194, 317
BssSI	CACGAG	1 cut(s)	270
Bst2BI	CACGAG	1 cut(s)	270
Bst4CI	ACNGT	2 cut(s)	437, 461
Bst6I	CTCTTC	1 cut(s)	30
BstC8I	GCNNGC	1 cut(s)	292
BstDEI	CTNAG	1 cut(s)	202
BstKTI	GATC	3 cut(s)	112, 197, 320
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	3 cut(s)	109, 194, 317
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 291, 480
BstSCI	CCNGG	1 cut(s)	326
BstV2I	GAAGAC	1 cut(s)	330
BstX2I	RGATCY	2 cut(s)	194, 317
BstYI	RGATCY	2 cut(s)	194, 317
BsuI	GTATCC	2 cut(s)	82, 449
BsuRI	GGCC	2 cut(s)	81, 326
BtrI	CACGTC	1 cut(s)	368
BtsI	GCAGTG	2 cut(s)	292, 481
BtsIMutI	CAGTG	2 cut(s)	292, 481
Cac8I	GCNNGC	1 cut(s)	292
CaiI	CAGNNNCTG	1 cut(s)	191
Cfr13I	GGNCC	2 cut(s)	79, 324
CseI	GACGC	1 cut(s)	216
DdeI	CTNAG	1 cut(s)	202
DpnI	GATC	3 cut(s)	111, 196, 319
DpnII	GATC	3 cut(s)	109, 194, 317
DraIII	CACNNNGTG	1 cut(s)	359
DrdI	GACNNNNNNGTC	1 cut(s)	265
DseDI	GACNNNNNNGTC	1 cut(s)	265
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco24I	GRGCYC	2 cut(s)	380, 470
Eco31I	GGTCTC	1 cut(s)	273
Eco57I	CTGAAG	1 cut(s)	324
Eco88I	CYCGRG	2 cut(s)	321, 379
EcoT38I	GRGCYC	2 cut(s)	380, 470
FaiI	YATR	2 cut(s)	50, 441
FalI	AAGNNNNNCTT	4 cut(s)	223, 255, 244, 276
FaqI	GGGAC	1 cut(s)	156
FauI	CCCGC	1 cut(s)	389
Fnu4HI	GCNGC	2 cut(s)	6, 484
FriOI	GRGCYC	2 cut(s)	380, 470
Fsp4HI	GCNGC	2 cut(s)	6, 484
FspBI	CTAG	3 cut(s)	146, 158, 219
GluI	GCNGC	2 cut(s)	6, 484
GsuI	CTGGAG	1 cut(s)	408
HaeIII	GGCC	2 cut(s)	81, 326
HapII	CCGG	4 cut(s)	198, 210, 315, 327
HgaI	GACGC	1 cut(s)	216
HpaII	CCGG	4 cut(s)	198, 210, 315, 327
HphI	GGTGA	4 cut(s)	413, 443, 455, 473
Hpy166II	GTNNAC	1 cut(s)	365
Hpy188I	TCNGA	2 cut(s)	76, 298
Hpy188III	TCNNGA	2 cut(s)	192, 387
Hpy8I	GTNNAC	1 cut(s)	365
HpyAV	CCTTC	1 cut(s)	88
HpyCH4III	ACNGT	2 cut(s)	437, 461
HpyCH4IV	ACGT	1 cut(s)	367
HpyCH4V	TGCA	3 cut(s)	8, 89, 290
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 291, 480
HpyF3I	CTNAG	1 cut(s)	202
HpySE526I	ACGT	1 cut(s)	367
Kzo9I	GATC	3 cut(s)	109, 194, 317
LguI	GCTCTTC	1 cut(s)	30
LmnI	GCTCC	2 cut(s)	131, 299
MaeI	CTAG	3 cut(s)	146, 158, 219
MaeII	ACGT	1 cut(s)	367
MaeIII	GTNAC	1 cut(s)	431
MalI	GATC	3 cut(s)	111, 196, 319
MboI	GATC	3 cut(s)	109, 194, 317
MboII	GAAGA	2 cut(s)	17, 330
MflI	RGATCY	2 cut(s)	194, 317
MhlI	GDGCHC	2 cut(s)	380, 470
MluCI	AATT	1 cut(s)	120
MseI	TTAA	1 cut(s)	66
MspI	CCGG	4 cut(s)	198, 210, 315, 327
MspR9I	CCNGG	1 cut(s)	328
Mva1269I	GAATGC	1 cut(s)	8
MwoI	GCNNNNNNNGC	3 cut(s)	29, 291, 480
NciI	CCSGG	1 cut(s)	328
NdeII	GATC	3 cut(s)	109, 194, 317
NlaIV	GGNNCC	3 cut(s)	196, 208, 295
NmeAIII	GCCGAG	1 cut(s)	107
NmuCI	GTSAC	1 cut(s)	431
PciSI	GCTCTTC	1 cut(s)	30
PctI	GAATGC	1 cut(s)	8
PkrI	GCNGC	2 cut(s)	7, 485
PspN4I	GGNNCC	3 cut(s)	196, 208, 295
PspPI	GGNCC	2 cut(s)	79, 324
PstNI	CAGNNNCTG	1 cut(s)	191
PsuI	RGATCY	2 cut(s)	194, 317
SapI	GCTCTTC	1 cut(s)	30
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	2 cut(s)	6, 484
Sau3AI	GATC	3 cut(s)	109, 194, 317
Sau96I	GGNCC	2 cut(s)	79, 324
ScrFI	CCNGG	1 cut(s)	328
SduI	GDGCHC	2 cut(s)	380, 470
Sse9I	AATT	1 cut(s)	120
SsiI	CCGC	2 cut(s)	213, 396
SspMI	CTAG	3 cut(s)	146, 158, 219
StyD4I	CCNGG	1 cut(s)	326
TaaI	ACNGT	2 cut(s)	437, 461
TaiI	ACGT	1 cut(s)	370
TaqI	TCGA	1 cut(s)	257
TasI	AATT	1 cut(s)	120
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TscAI	CASTG	2 cut(s)	292, 481
TseFI	GTSAC	1 cut(s)	431
TseI	GCWGC	2 cut(s)	5, 483
Tsp45I	GTSAC	1 cut(s)	431
TspDTI	ATGAA	2 cut(s)	231, 297
TspRI	CASTG	2 cut(s)	292, 481
XspI	CTAG	3 cut(s)	146, 158, 219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.