Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0014662

Physical Location & Seq

Genomic Coordinates Forward (+)

17272890 .. 17276397

Gene Structure 3508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g20620.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1530 bp

ATGGGAGTAGAAGCTAAGGAGTTTGATGAGGCGTTGTCGTCTTCAAATGGAGTGGTGAAGGAAGGAGTGCCCAAGTTCCTAGAAATGCAAGAGTGCTATAACATATGCATGGCAGCTTACAAAGAGATCATGACTTTGGCTTTGAAGGCAAACACTTGGGTTGTGGATATTCCAGTACTCGGTTCAATTGAGAAACTCCACCATATGTTTAGGGAGCCGCCATCGCCTGGGATGGAGATTGAGTATTCCATTGAGAGCGGCATTGTTCCATTGAGGCTAGATAATGTGGTTACTACCATGACAAATGTGGACGAATGGGCTTCAGTTTTTTGCAATATCGTTCATAACAGAACTGCTGAAGTGTCATCTGGTGTTATGAGTAATTTAGCGCCTAATACACCACCACATAACAGGGACAATTTCAAGTGTGTAAAAACGATAAATGCTGAACTTCTCTTGCCAATGCCATGTGCGCCAACACGTAAATTCAGTTTCATTAGGTTTTTGCGTGAAGTCATACCAGATGTATGGGCTGTTGTTGATGTATCGACTGACTATTTTCCGCATTTAAGTTCTACATTGAATGTCAACTGTAAGAGAAGGCCTTCTGGGGTCATTGTTAGGAGGCGTGATGACCATTCTGAGGTTATATGGATTGAGAATATGGAAATACATAACTACAATGTTGAAGATAGTATATACTCTGGTGTCAATTCAAACCTGGCATTCGATGCAAAGCACTGGATTAGTATGCTACTAACCAAAGAAAAGCGGATCCAAAGTAAATTTGTCACTGTTAAATTGCCTATTATGAACCATGCATTTTCGGTTCGTCATGCTCTGCTGACATTGGCTAGAAGATTGAAGATGGTATTTTTGAGCTACATAGCTGAGCATCCAGATGAAAATAAATGGGATTTATTATCAGATACAGGAATCAAGATTTTAAAGGATACTGATGCACAAAGAAATAATTACATGGCAGTGACTACCTCCAGAGTTGAAGCAACACCACTCTCCGTTTTCAACTTTCTTGTCAAAAGGAATCGACAATTACAGTGGCCATGTTTAGAAGAGATGGCAGAGCCTGAAGAAGTGATAAATTTAGTCACGGATGATCACAGCAACTGTATTACTATACATGCAAAGAGAGTGAATCAAAACGAGTCTACAGAACGAGTTATGCAAACCGAGTCTACAGAGAATTTTGAATATGTGTTACAAGAGGCTTCCAAAGATGAGTTTTGCTCTTTCATTATATCATCACAGATCGACCAATCAGAAGTCAATAGTGCTTTAGGATTTGGGCAACTATCTTGTTCCTTGAGACCTTTTGGTTTTTCCATAATACCTGATGGGTCTCGGGGACACCTATCTGATGCCTCCATCGTAACCATGGCCTGCCAACTAGAGCTTGAAGCTGATCTTGAAACTGGTGAAGTGATTGAAAGAATGAGCAATCTTGTCAGCGGTGTTTTTGAAGCGATAAATGGAGTATTTACAGTAGGGGAAGAAACAATAGAACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

START

Protein Analysis

510

Amino Acids

57.52

Weight (kDa)

5.09

Isoelectric Point (pI)

47.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
START	PF01852	46 - 252	1.8e-13	START domain
PDF2_C	PF25797	277 - 496	3.4e-17	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014662)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g20620 FvH4_2g20620
malus_domestica	MD00G1060500.v1.1 MD00G1060600.v1.1
pyrus_communis	pycom10g15300
rosa_chinensis	RchiOBHm_Chr6g0286791
rosa_laevigata	RLG00000012536
rosa_multiflora	Rmu_co8407681.1_g000001 Rmu_sc0007546.1_g000021 Rmu_ssc0000279.1_g000001
rosa_roxburghii	Rroxscaffold_7G00181970
rosa_rugosa	Rorug06G0183000
rosa_samantha	Rh6AG295600 Rh6BG300000 Rh6CG307700 Rh6DG291600
rosa_wichuraiana	Rw6G025490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	227
AccBSI	CCGCTC	1 cut(s)	258
AccI	GTMKAC	2 cut(s)	1169, 1196
AciI	CCGC	5 cut(s)	218, 258, 563, 772, 1470
AclWI	GGATC	2 cut(s)	769, 782
AcoI	YGGCCR	1 cut(s)	1061
AcsI	RAATTY	4 cut(s)	485, 785, 1102, 1204
AcuI	CTGAAG	3 cut(s)	306, 378, 1110
AfaI	GTAC	1 cut(s)	177
AfiI	CCNNNNNNNGG	3 cut(s)	179, 227, 643
AflIII	ACRYGT	1 cut(s)	479
AjnI	CCWGG	2 cut(s)	226, 720
AluBI	AGCT	6 cut(s)	14, 116, 882, 890, 1414, 1421
AluI	AGCT	6 cut(s)	14, 116, 882, 890, 1414, 1421
Alw26I	GTCTC	2 cut(s)	1321, 1365
AlwI	GGATC	2 cut(s)	769, 782
AlwNI	CAGNNNCTG	2 cut(s)	1088, 1128
Ama87I	CYCGRG	1 cut(s)	1362
AoxI	GGCC	3 cut(s)	602, 1061, 1398
ApeKI	GCWGC	1 cut(s)	113
ApoI	RAATTY	4 cut(s)	485, 785, 1102, 1204
ArsI	GACNNNNNNTTYG	2 cut(s)	124, 156
Asp700I	GAANNNNTTC	1 cut(s)	604
AspLEI	GCGC	2 cut(s)	391, 475
AsuHPI	GGTGA	2 cut(s)	67, 1448
AvaI	CYCGRG	1 cut(s)	1362
BaeGI	GKGCMC	1 cut(s)	72
BalI	TGGCCA	1 cut(s)	1063
BamHI	GGATCC	1 cut(s)	774
BbsI	GAAGAC	1 cut(s)	33
BbvI	GCAGC	1 cut(s)	125
BccI	CCATC	6 cut(s)	226, 229, 862, 1072, 1349, 1394
BciT130I	CCWGG	2 cut(s)	228, 722
BciVI	GTATCC	1 cut(s)	946
BclI	TGATCA	1 cut(s)	1117
BcoDI	GTCTC	2 cut(s)	1321, 1365
BfaI	CTAG	4 cut(s)	80, 278, 855, 1409
BfmI	CTRYAG	2 cut(s)	1170, 1197
BfoI	RGCGCY	1 cut(s)	392
BfuI	GTATCC	1 cut(s)	946
BisI	GCNGC	3 cut(s)	114, 218, 259
BlpI	GCTNAGC	1 cut(s)	891
BlsI	GCNGC	3 cut(s)	115, 219, 260
BmcAI	AGTACT	1 cut(s)	177
Bme1390I	CCNGG	2 cut(s)	228, 722
BmeT110I	CYCGRG	1 cut(s)	1362
BmiI	GGNNCC	2 cut(s)	216, 776
BmrFI	CCNGG	2 cut(s)	228, 722
BmsI	GCATC	4 cut(s)	721, 904, 949, 1369
BpiI	GAAGAC	1 cut(s)	33
BplI	GAGNNNNNCTC	2 cut(s)	1232, 1264
BpmI	CTGGAG	1 cut(s)	979
Bpu10I	CCTNAGC	1 cut(s)	15
Bpu1102I	GCTNAGC	1 cut(s)	891
BpuEI	CTTGAG	1 cut(s)	1345
BsaAI	YACGTR	1 cut(s)	482
BsaI	GGTCTC	2 cut(s)	1321, 1365
BsaJI	CCNNGG	2 cut(s)	227, 1395
BsaXI	ACNNNNNCTCC	2 cut(s)	227, 257
Bsc4I	CCNNNNNNNGG	3 cut(s)	179, 227, 643
Bse1I	ACTGG	3 cut(s)	173, 746, 1438
BseBI	CCWGG	2 cut(s)	228, 722
BseDI	CCNNGG	2 cut(s)	227, 1395
BseGI	GGATG	3 cut(s)	237, 895, 1120
BseLI	CCNNNNNNNGG	3 cut(s)	179, 227, 643
BseMII	CTCAG	2 cut(s)	633, 882
BseNI	ACTGG	3 cut(s)	173, 746, 1438
BseSI	GKGCMC	1 cut(s)	72
BseXI	GCAGC	1 cut(s)	125
BshFI	GGCC	3 cut(s)	604, 1063, 1400
BsiHKCI	CYCGRG	1 cut(s)	1362
BslFI	GGGAC	2 cut(s)	428, 1380
BslI	CCNNNNNNNGG	3 cut(s)	179, 227, 643
BsmAI	GTCTC	2 cut(s)	1321, 1365
BsmFI	GGGAC	2 cut(s)	428, 1380
BsmI	GAATGC	1 cut(s)	725
BsnI	GGCC	3 cut(s)	604, 1063, 1400
Bso31I	GGTCTC	2 cut(s)	1321, 1365
BsoBI	CYCGRG	1 cut(s)	1362
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp143I	GATC	5 cut(s)	126, 774, 1117, 1269, 1423
Bsp1720I	GCTNAGC	1 cut(s)	891
Bsp19I	CCATGG	1 cut(s)	1395
BspACI	CCGC	5 cut(s)	218, 258, 563, 772, 1470
BspANI	GGCC	3 cut(s)	604, 1063, 1400
BspCNI	CTCAG	2 cut(s)	634, 883
BspHI	TCATGA	1 cut(s)	129
BspLI	GGNNCC	2 cut(s)	216, 776
BspPI	GGATC	2 cut(s)	769, 782
BspTNI	GGTCTC	2 cut(s)	1321, 1365
BsrBI	CCGCTC	1 cut(s)	258
BsrI	ACTGG	3 cut(s)	173, 746, 1438
BssECI	CCNNGG	2 cut(s)	227, 1395
BssMI	GATC	5 cut(s)	126, 774, 1117, 1269, 1423
BssT1I	CCWWGG	1 cut(s)	1395
Bst2UI	CCWGG	2 cut(s)	228, 722
Bst4CI	ACNGT	6 cut(s)	593, 796, 1059, 1130, 1504, 1527
Bst6I	CTCTTC	1 cut(s)	1068
BstAPI	GCANNNNNTGC	1 cut(s)	731
BstBAI	YACGTR	1 cut(s)	482
BstC8I	GCNNGC	1 cut(s)	1402
BstDEI	CTNAG	3 cut(s)	15, 642, 891
BstDSI	CCRYGG	1 cut(s)	1395
BstF5I	GGATG	3 cut(s)	237, 895, 1120
BstH2I	RGCGCY	1 cut(s)	392
BstHHI	GCGC	2 cut(s)	391, 475
BstKTI	GATC	5 cut(s)	129, 777, 1120, 1272, 1426
BstMAI	GTCTC	2 cut(s)	1321, 1365
BstMBI	GATC	5 cut(s)	126, 774, 1117, 1269, 1423
BstMWI	GCNNNNNNNGC	4 cut(s)	146, 223, 472, 731
BstNI	CCWGG	2 cut(s)	228, 722
BstNSI	RCATGY	1 cut(s)	1145
BstSCI	CCNGG	2 cut(s)	226, 720
BstSFI	CTRYAG	2 cut(s)	1170, 1197
BstSLI	GKGCMC	1 cut(s)	72
BstV1I	GCAGC	1 cut(s)	125
BstV2I	GAAGAC	1 cut(s)	33
BstX2I	RGATCY	1 cut(s)	774
BstXI	CCANNNNNNTGG	1 cut(s)	528
BstYI	RGATCY	1 cut(s)	774
BsuI	GTATCC	1 cut(s)	946
BsuRI	GGCC	3 cut(s)	604, 1063, 1400
BtgI	CCRYGG	1 cut(s)	1395
BtgZI	GCGATG	1 cut(s)	207
BtsCI	GGATG	3 cut(s)	237, 895, 1120
BtsI	GCAGTG	1 cut(s)	990
BtsIMutI	CAGTG	4 cut(s)	739, 792, 990, 1064
Cac8I	GCNNGC	1 cut(s)	1402
CaiI	CAGNNNCTG	2 cut(s)	1088, 1128
CciI	TCATGA	1 cut(s)	129
CfoI	GCGC	2 cut(s)	391, 475
Csp6I	GTAC	1 cut(s)	176
CspCI	CAANNNNNGTGG	4 cut(s)	33, 68, 1040, 1075
CviQI	GTAC	1 cut(s)	176
DdeI	CTNAG	3 cut(s)	15, 642, 891
DpnI	GATC	5 cut(s)	128, 776, 1119, 1271, 1425
DpnII	GATC	5 cut(s)	126, 774, 1117, 1269, 1423
DraI	TTTAAA	1 cut(s)	948
EaeI	YGGCCR	1 cut(s)	1061
Eam1104I	CTCTTC	1 cut(s)	1068
EarI	CTCTTC	1 cut(s)	1068
Eco130I	CCWWGG	1 cut(s)	1395
Eco147I	AGGCCT	1 cut(s)	604
Eco31I	GGTCTC	2 cut(s)	1321, 1365
Eco57I	CTGAAG	3 cut(s)	306, 378, 1110
Eco88I	CYCGRG	1 cut(s)	1362
EcoRII	CCWGG	2 cut(s)	226, 720
EcoT14I	CCWWGG	1 cut(s)	1395
EcoT22I	ATGCAT	2 cut(s)	110, 823
ErhI	CCWWGG	1 cut(s)	1395
FalI	AAGNNNNNCTT	2 cut(s)	1410, 1442
FaqI	GGGAC	2 cut(s)	428, 1380
FauNDI	CATATG	2 cut(s)	104, 204
FbaI	TGATCA	1 cut(s)	1117
FblI	GTMKAC	2 cut(s)	1169, 1196
Fnu4HI	GCNGC	3 cut(s)	114, 218, 259
FokI	GGATG	3 cut(s)	244, 882, 1127
Fsp4HI	GCNGC	3 cut(s)	114, 218, 259
FspBI	CTAG	4 cut(s)	80, 278, 855, 1409
GlaI	GCGC	2 cut(s)	390, 474
GluI	GCNGC	3 cut(s)	114, 218, 259
GsuI	CTGGAG	1 cut(s)	979
HaeII	RGCGCY	1 cut(s)	392
HaeIII	GGCC	3 cut(s)	604, 1063, 1400
HhaI	GCGC	2 cut(s)	391, 475
Hin6I	GCGC	2 cut(s)	389, 473
HinP1I	GCGC	2 cut(s)	389, 473
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HinfI	GANTC	5 cut(s)	936, 1045, 1156, 1166, 1193
HphI	GGTGA	2 cut(s)	67, 1448
Hpy166II	GTNNAC	4 cut(s)	310, 589, 1170, 1197
Hpy188I	TCNGA	4 cut(s)	643, 928, 1282, 1378
Hpy188III	TCNNGA	5 cut(s)	130, 899, 940, 996, 1427
Hpy8I	GTNNAC	4 cut(s)	310, 589, 1170, 1197
HpyAV	CCTTC	5 cut(s)	52, 56, 139, 594, 615
HpyCH4III	ACNGT	6 cut(s)	593, 796, 1059, 1130, 1504, 1527
HpyCH4IV	ACGT	1 cut(s)	481
HpyCH4V	TGCA	8 cut(s)	88, 108, 333, 734, 821, 962, 1145, 1186
HpyF10VI	GCNNNNNNNGC	4 cut(s)	146, 223, 472, 731
HpyF3I	CTNAG	3 cut(s)	15, 642, 891
HpySE526I	ACGT	1 cut(s)	481
HspAI	GCGC	2 cut(s)	389, 473
Ksp22I	TGATCA	1 cut(s)	1117
Kzo9I	GATC	5 cut(s)	126, 774, 1117, 1269, 1423
LmnI	GCTCC	1 cut(s)	214
Lsp1109I	GCAGC	1 cut(s)	125
LweI	GCATC	4 cut(s)	721, 904, 949, 1369
MaeI	CTAG	4 cut(s)	80, 278, 855, 1409
MaeII	ACGT	1 cut(s)	481
MaeIII	GTNAC	6 cut(s)	289, 790, 985, 1108, 1218, 1390
MalI	GATC	5 cut(s)	128, 776, 1119, 1271, 1425
MbiI	CCGCTC	1 cut(s)	258
MboI	GATC	5 cut(s)	126, 774, 1117, 1269, 1423
MboII	GAAGA	7 cut(s)	33, 701, 870, 877, 1085, 1103, 1523
MfeI	CAATTG	1 cut(s)	186
MflI	RGATCY	1 cut(s)	774
MhlI	GDGCHC	1 cut(s)	72
MlsI	TGGCCA	1 cut(s)	1063
MluNI	TGGCCA	1 cut(s)	1063
MlyI	GAGTC	2 cut(s)	1175, 1202
MnlI	CCTC	7 cut(s)	22, 267, 618, 637, 1003, 1219, 1393
Mox20I	TGGCCA	1 cut(s)	1063
Mph1103I	ATGCAT	2 cut(s)	110, 823
MroXI	GAANNNNTTC	1 cut(s)	604
MscI	TGGCCA	1 cut(s)	1063
MseI	TTAA	3 cut(s)	569, 798, 947
MslI	CAYNNNNRTG	3 cut(s)	107, 900, 983
Msp20I	TGGCCA	1 cut(s)	1063
MspA1I	CMGCKG	1 cut(s)	1470
MspR9I	CCNGG	2 cut(s)	228, 722
MunI	CAATTG	1 cut(s)	186
Mva1269I	GAATGC	1 cut(s)	725
MvaI	CCWGG	2 cut(s)	228, 722
MwoI	GCNNNNNNNGC	4 cut(s)	146, 223, 472, 731
NcoI	CCATGG	1 cut(s)	1395
NdeI	CATATG	2 cut(s)	104, 204
NdeII	GATC	5 cut(s)	126, 774, 1117, 1269, 1423
NlaIV	GGNNCC	2 cut(s)	216, 776
NmuCI	GTSAC	3 cut(s)	790, 985, 1108
NsiI	ATGCAT	2 cut(s)	110, 823
NspI	RCATGY	1 cut(s)	1145
PagI	TCATGA	1 cut(s)	129
PceI	AGGCCT	1 cut(s)	604
PctI	GAATGC	1 cut(s)	725
PdmI	GAANNNNTTC	1 cut(s)	604
PfeI	GAWTC	3 cut(s)	936, 1045, 1156
PflMI	CCANNNNNTGG	1 cut(s)	227
PkrI	GCNGC	3 cut(s)	115, 219, 260
PleI	GAGTC	2 cut(s)	1174, 1201
PpsI	GAGTC	2 cut(s)	1174, 1201
Ppu21I	YACGTR	1 cut(s)	482
Psp6I	CCWGG	2 cut(s)	226, 720
PspGI	CCWGG	2 cut(s)	226, 720
PspN4I	GGNNCC	2 cut(s)	216, 776
PstNI	CAGNNNCTG	2 cut(s)	1088, 1128
PsuI	RGATCY	1 cut(s)	774
RsaI	GTAC	1 cut(s)	177
RsaNI	GTAC	1 cut(s)	176
RseI	CAYNNNNRTG	3 cut(s)	107, 900, 983
SaqAI	TTAA	3 cut(s)	569, 798, 947
SatI	GCNGC	3 cut(s)	114, 218, 259
Sau3AI	GATC	5 cut(s)	126, 774, 1117, 1269, 1423
ScaI	AGTACT	1 cut(s)	177
SchI	GAGTC	2 cut(s)	1175, 1202
ScrFI	CCNGG	2 cut(s)	228, 722
SduI	GDGCHC	1 cut(s)	72
SfaNI	GCATC	4 cut(s)	721, 904, 949, 1369
SfcI	CTRYAG	2 cut(s)	1170, 1197
SmiMI	CAYNNNNRTG	3 cut(s)	107, 900, 983
SmlI	CTYRAG	1 cut(s)	1324
SmoI	CTYRAG	1 cut(s)	1324
SseBI	AGGCCT	1 cut(s)	604
SsiI	CCGC	5 cut(s)	218, 258, 563, 772, 1470
SspMI	CTAG	4 cut(s)	80, 278, 855, 1409
StuI	AGGCCT	1 cut(s)	604
StyD4I	CCNGG	2 cut(s)	226, 720
StyI	CCWWGG	1 cut(s)	1395
TaaI	ACNGT	6 cut(s)	593, 796, 1059, 1130, 1504, 1527
TaiI	ACGT	1 cut(s)	484
TaqI	TCGA	4 cut(s)	548, 729, 1048, 1272
TatI	WGTACW	1 cut(s)	175
TauI	GCSGC	2 cut(s)	220, 261
TfiI	GAWTC	3 cut(s)	936, 1045, 1156
Tru1I	TTAA	3 cut(s)	569, 798, 947
Tru9I	TTAA	3 cut(s)	569, 798, 947
TscAI	CASTG	4 cut(s)	746, 799, 990, 1064
TseFI	GTSAC	3 cut(s)	790, 985, 1108
TseI	GCWGC	1 cut(s)	113
Tsp45I	GTSAC	3 cut(s)	790, 985, 1108
TspDTI	ATGAA	5 cut(s)	332, 484, 827, 918, 1243
TspGWI	ACGGA	2 cut(s)	1009, 1127
TspRI	CASTG	4 cut(s)	746, 799, 990, 1064
Van91I	CCANNNNNTGG	1 cut(s)	227
XapI	RAATTY	4 cut(s)	485, 785, 1102, 1204
XceI	RCATGY	1 cut(s)	1145
XcmI	CCANNNNNNNNNTGG	2 cut(s)	304, 1393
XmiI	GTMKAC	2 cut(s)	1169, 1196
XmnI	GAANNNNTTC	1 cut(s)	604
XspI	CTAG	4 cut(s)	80, 278, 855, 1409
ZrmI	AGTACT	1 cut(s)	177
Zsp2I	ATGCAT	2 cut(s)	110, 823

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.