Rw6G025490

homeobox-leucine zipper protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
48840283 .. 48844602
4320 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G025490.1

Sequence Viewer

Length: 1548 bp
ATGTGGATTGATGTAAAATTTTCTATTTCTCTATTTTATGAGGCGTCGTCTTCGAATGGAATCGAGGAGCCAAAGGGAGTGCCCAAGTTTCTAGAAATGCAGGAGTGCTATAACATATGCATGGCAGCTTACAAAGAGGTCATGACTATGGCTGTGAAAGCAAACACTTGGGTTGTGGAGGTTCCACTGCTCGGTTCGATTGAGGAACTCCAGCAGATGTTCAGGGCTCCACCCTCTCCTGGGATGGAGATTGAGTATTCCATTGACAGCGGTGTTGTTCCGTTCAAGCTAGAGACTGTGGTTGCTGCCATGACAAATGTGGATGAATGGGCTTCAGCCTTGAGCAACATTGTTCATCACAGAACTGATGAAGTGCCGAGTGGTGTTATGAGTAATTTGGCGTGTAATACACCGCCACATAGCCGTGACAATTTCAAGGGTGTAAAAACGATAAATGCTGAACTTCTCTTGCCCATGCCATGTATGCCAACACGTAAATTCAGTTTTGTCAGGTTTTTGAGGCAAGTCATACCAGATGTATGGGCTGTTGTTGATGTATCGACCGGCTATTTTCCGCACATTGACTCTACACTGAAAGTGAACTGTAAGAGAAGGCCTTCTGGGGTCATCATTAGGAGGCGTGATGATCATTCTGAGGTTATATGGATTGAGAATATGGAAGTACAGAAATGCAATGTCGACCAAGATAGTATATACTCTGGAGTAATCAATTCAAACCTGGCATTCGGAGCAAAGCGCTGGATTAGTACATTGTCAACCAAAGAAAAGCGGATCGAAAGTAGATTTGTCACTCTTAGACTGCCTAATAATTTTTCTCAAGCATTTTCAGTTCGTGTTGCTCTGCTGACATTGACTAGAAGGTTGAAGAAGGCATATTTGAATTACATAACTGAGCATCCAGATGAAACTAAATGGGATTTACTATCAGACACAGGAGTTCAGATTTTGAAGGATACTGATGCAGAAGGAAAAGATAATTACATGGCAGTGACTACCTTCCGAGTCAAAGCAACTCCGAGCACAGTTTTTAACTTTCTTGTCAAAAGGACTCGGGAATTACAGTGGTCACATTTAGAAGAGATGGAAGAGCCTGAAGAAGTGATAACGTTAGTCACGGACGATGACAGCAACTGTATTACTTTACATGCAAAATCAGTTATGCAAACAGAGTCTGCAGAGAATTTTGAATATGTGTTACAAGAGGCTTCCAGGGATGAGTTTTGCTCTTTCATTATAGCATCACCTATCAGCCAGTCAGAAGTTAATAGTGCTTTAGGGCTTGGAAAATCATCTTGTGCCTTAAGACCTTTTGGTTTTTCCATAATACCTGATGGGTCTCGGGGACTCCTATCCGATGCCTCCCTTGTAACTATGGCCTTCCAACGAGAGCTTGACGCTGATCTTGAAACTAGTGAAGTGATTGAAGGAATGAGCAATCATGTCAGCGATATTGTTGGAGCGATAAATGAAGCATATTCTGCAGTTACAGTAGGGGAAGAAGCAACAGAGCAAGCAACAGAGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

515

Amino Acids

57.73

Weight (kDa)

4.92

Isoelectric Point (pI)

51.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
START PF01852 43 - 262 1.5e-14 START domain
PDF2_C PF25797 285 - 498 7.7e-21 PDF2-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 699
AciI CCGC 4 cut(s) 270, 413, 575, 790
AclI AACGTT 1 cut(s) 1127
AclWI GGATC 1 cut(s) 800
AcsI RAATTY 3 cut(s) 17, 497, 1201
AcuI CTGAAG 2 cut(s) 318, 1134
AcyI GRCGYC 1 cut(s) 44
AfaI GTAC 2 cut(s) 684, 769
AfeI AGCGCT 1 cut(s) 758
AfiI CCNNNNNNNGG 3 cut(s) 191, 239, 240
AflII CTTAAG 1 cut(s) 1321
AflIII ACRYGT 1 cut(s) 491
AgsI TTSAA 9 cut(s) 286, 436, 735, 886, 901, 970, 1208, 1427, 1445
AhlI ACTAGT 1 cut(s) 1430
AjnI CCWGG 3 cut(s) 238, 738, 1229
AluBI AGCT 4 cut(s) 128, 289, 1411, 1543
AluI AGCT 4 cut(s) 128, 289, 1411, 1543
Alw21I GWGCWC 1 cut(s) 1043
Alw26I GTCTC 2 cut(s) 287, 1362
AlwI GGATC 1 cut(s) 800
AlwNI CAGNNNCTG 2 cut(s) 1152, 1193
Ama87I CYCGRG 2 cut(s) 1071, 1359
Aor51HI AGCGCT 1 cut(s) 758
AoxI GGCC 2 cut(s) 614, 1395
ApeKI GCWGC 2 cut(s) 125, 305
ApoI RAATTY 3 cut(s) 17, 497, 1201
Asp700I GAANNNNTTC 1 cut(s) 616
AspLEI GCGC 1 cut(s) 759
AsuHPI GGTGA 1 cut(s) 1254
AsuII TTCGAA 1 cut(s) 53
AvaI CYCGRG 2 cut(s) 1071, 1359
BaeGI GKGCMC 1 cut(s) 84
BanII GRGCYC 1 cut(s) 229
BbsI GAAGAC 1 cut(s) 42
Bbv12I GWGCWC 1 cut(s) 1043
BbvI GCAGC 2 cut(s) 137, 292
BccI CCATC 3 cut(s) 238, 1096, 1346
BceAI ACGGC 1 cut(s) 408
BciT130I CCWGG 3 cut(s) 240, 740, 1231
BciVI GTATCC 1 cut(s) 967
BclI TGATCA 1 cut(s) 646
BcoDI GTCTC 2 cut(s) 287, 1362
BcuI ACTAGT 1 cut(s) 1430
BfaI CTAG 4 cut(s) 92, 290, 876, 1431
BfmI CTRYAG 3 cut(s) 1194, 1500, 1544
BfoI RGCGCY 1 cut(s) 760
BfrI CTTAAG 1 cut(s) 1321
BfuI GTATCC 1 cut(s) 967
BisI GCNGC 2 cut(s) 126, 306
BlsI GCNGC 2 cut(s) 127, 307
Bme1390I CCNGG 3 cut(s) 240, 740, 1231
BmeT110I CYCGRG 2 cut(s) 1071, 1359
BmiI GGNNCC 3 cut(s) 69, 183, 228
BmrFI CCNGG 3 cut(s) 240, 740, 1231
BmsI GCATC 4 cut(s) 925, 970, 1268, 1366
BpiI GAAGAC 1 cut(s) 42
BplI GAGNNNNNCTC 2 cut(s) 1229, 1261
BpmI CTGGAG 2 cut(s) 194, 741
Bpu14I TTCGAA 1 cut(s) 53
BpuEI CTTGAG 2 cut(s) 361, 822
BsaAI YACGTR 1 cut(s) 494
BsaHI GRCGYC 1 cut(s) 44
BsaI GGTCTC 1 cut(s) 1362
BsaJI CCNNGG 2 cut(s) 239, 1230
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bsc4I CCNNNNNNNGG 3 cut(s) 191, 239, 240
Bse118I RCCGGY 1 cut(s) 563
Bse1I ACTGG 1 cut(s) 1273
Bse3DI GCAATG 1 cut(s) 700
BseBI CCWGG 3 cut(s) 240, 740, 1231
BseDI CCNNGG 2 cut(s) 239, 1230
BseGI GGATG 4 cut(s) 249, 328, 916, 1240
BseLI CCNNNNNNNGG 3 cut(s) 191, 239, 240
BseMI GCAATG 1 cut(s) 700
BseMII CTCAG 2 cut(s) 645, 903
BseNI ACTGG 1 cut(s) 1273
BseRI GAGGAG 1 cut(s) 80
BseSI GKGCMC 1 cut(s) 84
BseXI GCAGC 2 cut(s) 137, 292
Bsh1285I CGRYCG 1 cut(s) 564
BshFI GGCC 2 cut(s) 616, 1397
BsiEI CGRYCG 1 cut(s) 564
BsiHKAI GWGCWC 1 cut(s) 1043
BsiHKCI CYCGRG 2 cut(s) 1071, 1359
BsiSI CCGG 1 cut(s) 564
BslFI GGGAC 1 cut(s) 1377
BslI CCNNNNNNNGG 3 cut(s) 191, 239, 240
BsmAI GTCTC 2 cut(s) 287, 1362
BsmFI GGGAC 1 cut(s) 1377
BsmI GAATGC 1 cut(s) 743
BsnI GGCC 2 cut(s) 616, 1397
Bso31I GGTCTC 1 cut(s) 1362
BsoBI CYCGRG 2 cut(s) 1071, 1359
Bsp119I TTCGAA 1 cut(s) 53
Bsp1286I GDGCHC 3 cut(s) 84, 229, 1043
Bsp143I GATC 3 cut(s) 646, 792, 1420
BspACI CCGC 4 cut(s) 270, 413, 575, 790
BspANI GGCC 2 cut(s) 616, 1397
BspCNI CTCAG 2 cut(s) 646, 904
BspHI TCATGA 1 cut(s) 141
BspLI GGNNCC 3 cut(s) 69, 183, 228
BspMAI CTGCAG 2 cut(s) 1198, 1504
BspPI GGATC 1 cut(s) 800
BspQI GCTCTTC 1 cut(s) 1101
BspT104I TTCGAA 1 cut(s) 53
BspTI CTTAAG 1 cut(s) 1321
BspTNI GGTCTC 1 cut(s) 1362
BsrDI GCAATG 1 cut(s) 700
BsrFI RCCGGY 1 cut(s) 563
BsrI ACTGG 1 cut(s) 1273
BssAI RCCGGY 1 cut(s) 563
BssECI CCNNGG 2 cut(s) 239, 1230
BssMI GATC 3 cut(s) 646, 792, 1420
BssNI GRCGYC 1 cut(s) 44
Bst2UI CCWGG 3 cut(s) 240, 740, 1231
Bst4CI ACNGT 6 cut(s) 298, 605, 1045, 1083, 1154, 1510
Bst6I CTCTTC 2 cut(s) 1092, 1101
BstACI GRCGYC 1 cut(s) 44
BstAFI CTTAAG 1 cut(s) 1321
BstAPI GCANNNNNTGC 1 cut(s) 1499
BstBAI YACGTR 1 cut(s) 494
BstBI TTCGAA 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 1533
BstDEI CTNAG 3 cut(s) 654, 815, 912
BstF5I GGATG 4 cut(s) 249, 328, 916, 1240
BstH2I RGCGCY 1 cut(s) 760
BstHHI GCGC 1 cut(s) 759
BstKTI GATC 3 cut(s) 649, 795, 1423
BstMAI GTCTC 2 cut(s) 287, 1362
BstMBI GATC 3 cut(s) 646, 792, 1420
BstMCI CGRYCG 1 cut(s) 564
BstMWI GCNNNNNNNGC 4 cut(s) 158, 484, 749, 1499
BstNI CCWGG 3 cut(s) 240, 740, 1231
BstNSI RCATGY 1 cut(s) 1169
BstSCI CCNGG 3 cut(s) 238, 738, 1229
BstSFI CTRYAG 3 cut(s) 1194, 1500, 1544
BstSLI GKGCMC 1 cut(s) 84
BstV1I GCAGC 2 cut(s) 137, 292
BstV2I GAAGAC 1 cut(s) 42
BstXI CCANNNNNNTGG 1 cut(s) 540
BsuI GTATCC 1 cut(s) 967
BsuRI GGCC 2 cut(s) 616, 1397
BtsCI GGATG 4 cut(s) 249, 328, 916, 1240
BtsI GCAGTG 2 cut(s) 185, 1014
BtsIMutI CAGTG 4 cut(s) 185, 590, 1014, 1088
Cac8I GCNNGC 1 cut(s) 1533
CaiI CAGNNNCTG 2 cut(s) 1152, 1193
CciI TCATGA 1 cut(s) 141
CfoI GCGC 1 cut(s) 759
Cfr10I RCCGGY 1 cut(s) 563
CseI GACGC 2 cut(s) 33, 1424
Csp6I GTAC 2 cut(s) 683, 768
CviAII CATG 8 cut(s) 121, 142, 310, 475, 480, 1003, 1166, 1460
CviQI GTAC 2 cut(s) 683, 768
DdeI CTNAG 3 cut(s) 654, 815, 912
DpnI GATC 3 cut(s) 648, 794, 1422
DpnII GATC 3 cut(s) 646, 792, 1420
Eam1104I CTCTTC 2 cut(s) 1092, 1101
EarI CTCTTC 2 cut(s) 1092, 1101
Eco147I AGGCCT 1 cut(s) 616
Eco24I GRGCYC 1 cut(s) 229
Eco31I GGTCTC 1 cut(s) 1362
Eco47III AGCGCT 1 cut(s) 758
Eco57I CTGAAG 2 cut(s) 318, 1134
Eco88I CYCGRG 2 cut(s) 1071, 1359
EcoRII CCWGG 3 cut(s) 238, 738, 1229
EcoT22I ATGCAT 1 cut(s) 122
EcoT38I GRGCYC 1 cut(s) 229
FaeI CATG 8 cut(s) 124, 145, 313, 478, 483, 1006, 1169, 1463
FaqI GGGAC 1 cut(s) 1377
FatI CATG 8 cut(s) 120, 141, 309, 474, 479, 1002, 1165, 1459
FauNDI CATATG 1 cut(s) 116
FbaI TGATCA 1 cut(s) 646
FblI GTMKAC 1 cut(s) 699
Fnu4HI GCNGC 2 cut(s) 126, 306
FokI GGATG 4 cut(s) 256, 335, 903, 1247
FriOI GRGCYC 1 cut(s) 229
Fsp4HI GCNGC 2 cut(s) 126, 306
FspBI CTAG 4 cut(s) 92, 290, 876, 1431
GlaI GCGC 1 cut(s) 758
GluI GCNGC 2 cut(s) 126, 306
GsuI CTGGAG 2 cut(s) 194, 741
HaeII RGCGCY 1 cut(s) 760
HaeIII GGCC 2 cut(s) 616, 1397
HapII CCGG 1 cut(s) 564
HgaI GACGC 2 cut(s) 33, 1424
HhaI GCGC 1 cut(s) 759
Hin1I GRCGYC 1 cut(s) 44
Hin1II CATG 8 cut(s) 124, 145, 313, 478, 483, 1006, 1169, 1463
Hin6I GCGC 1 cut(s) 757
HinP1I GCGC 1 cut(s) 757
HincII GTYRAC 2 cut(s) 700, 777
HindII GTYRAC 2 cut(s) 700, 777
HinfI GANTC 6 cut(s) 60, 584, 1023, 1069, 1190, 1365
HpaII CCGG 1 cut(s) 564
HphI GGTGA 1 cut(s) 1254
Hpy166II GTNNAC 3 cut(s) 601, 700, 777
Hpy188I TCNGA 8 cut(s) 655, 749, 949, 963, 1022, 1038, 1279, 1375
Hpy188III TCNNGA 6 cut(s) 92, 142, 720, 920, 1073, 1424
Hpy8I GTNNAC 3 cut(s) 601, 700, 777
Hpy99I CGWCG 1 cut(s) 49
HpyAV CCTTC 9 cut(s) 606, 627, 873, 883, 964, 980, 1027, 1408, 1439
HpyCH4III ACNGT 6 cut(s) 298, 605, 1045, 1083, 1154, 1510
HpyCH4IV ACGT 2 cut(s) 493, 1127
HpyCH4V TGCA 8 cut(s) 100, 120, 693, 983, 1169, 1183, 1196, 1502
HpyF10VI GCNNNNNNNGC 4 cut(s) 158, 484, 749, 1499
HpyF3I CTNAG 3 cut(s) 654, 815, 912
HpySE526I ACGT 2 cut(s) 493, 1127
Hsp92I GRCGYC 1 cut(s) 44
Hsp92II CATG 8 cut(s) 124, 145, 313, 478, 483, 1006, 1169, 1463
HspAI GCGC 1 cut(s) 757
Ksp22I TGATCA 1 cut(s) 646
Kzo9I GATC 3 cut(s) 646, 792, 1420
LguI GCTCTTC 1 cut(s) 1101
LmnI GCTCC 4 cut(s) 67, 232, 749, 1478
Lsp1109I GCAGC 2 cut(s) 137, 292
LweI GCATC 4 cut(s) 925, 970, 1268, 1366
MaeI CTAG 4 cut(s) 92, 290, 876, 1431
MaeII ACGT 2 cut(s) 493, 1127
MaeIII GTNAC 8 cut(s) 425, 808, 1009, 1086, 1132, 1215, 1387, 1504
MalI GATC 3 cut(s) 648, 794, 1422
MboI GATC 3 cut(s) 646, 792, 1420
MboII GAAGA 6 cut(s) 42, 898, 1109, 1118, 1127, 1529
MhlI GDGCHC 3 cut(s) 84, 229, 1043
MlyI GAGTC 5 cut(s) 578, 1032, 1063, 1199, 1359
MmeI TCCRAC 2 cut(s) 1426, 1456
Mph1103I ATGCAT 1 cut(s) 122
MroXI GAANNNNTTC 1 cut(s) 616
MseI TTAA 3 cut(s) 1050, 1284, 1322
MslI CAYNNNNRTG 5 cut(s) 119, 146, 423, 921, 1007
MspA1I CMGCKG 1 cut(s) 270
MspCI CTTAAG 1 cut(s) 1321
MspI CCGG 1 cut(s) 564
MspR9I CCNGG 3 cut(s) 240, 740, 1231
Mva1269I GAATGC 1 cut(s) 743
MvaI CCWGG 3 cut(s) 240, 740, 1231
MwoI GCNNNNNNNGC 4 cut(s) 158, 484, 749, 1499
NdeI CATATG 1 cut(s) 116
NdeII GATC 3 cut(s) 646, 792, 1420
NlaIII CATG 8 cut(s) 124, 145, 313, 478, 483, 1006, 1169, 1463
NlaIV GGNNCC 3 cut(s) 69, 183, 228
NmeAIII GCCGAG 1 cut(s) 402
NmuCI GTSAC 5 cut(s) 425, 808, 1009, 1086, 1132
NsiI ATGCAT 1 cut(s) 122
NspI RCATGY 1 cut(s) 1169
NspV TTCGAA 1 cut(s) 53
PagI TCATGA 1 cut(s) 141
PceI AGGCCT 1 cut(s) 616
PciSI GCTCTTC 1 cut(s) 1101
PctI GAATGC 1 cut(s) 743
PdmI GAANNNNTTC 1 cut(s) 616
PfeI GAWTC 1 cut(s) 60
PkrI GCNGC 2 cut(s) 127, 307
PleI GAGTC 5 cut(s) 578, 1031, 1063, 1198, 1359
PpsI GAGTC 5 cut(s) 578, 1031, 1063, 1198, 1359
Ppu21I YACGTR 1 cut(s) 494
Psp1406I AACGTT 1 cut(s) 1127
Psp6I CCWGG 3 cut(s) 238, 738, 1229
PspGI CCWGG 3 cut(s) 238, 738, 1229
PspN4I GGNNCC 3 cut(s) 69, 183, 228
PstI CTGCAG 2 cut(s) 1198, 1504
PstNI CAGNNNCTG 2 cut(s) 1152, 1193
RsaI GTAC 2 cut(s) 684, 769
RsaNI GTAC 2 cut(s) 683, 768
RseI CAYNNNNRTG 5 cut(s) 119, 146, 423, 921, 1007
SalI GTCGAC 1 cut(s) 698
SapI GCTCTTC 1 cut(s) 1101
SaqAI TTAA 3 cut(s) 1050, 1284, 1322
SatI GCNGC 2 cut(s) 126, 306
Sau3AI GATC 3 cut(s) 646, 792, 1420
SchI GAGTC 5 cut(s) 578, 1032, 1063, 1199, 1359
ScrFI CCNGG 3 cut(s) 240, 740, 1231
SduI GDGCHC 3 cut(s) 84, 229, 1043
SfaNI GCATC 4 cut(s) 925, 970, 1268, 1366
SfcI CTRYAG 3 cut(s) 1194, 1500, 1544
SfuI TTCGAA 1 cut(s) 53
SmiMI CAYNNNNRTG 5 cut(s) 119, 146, 423, 921, 1007
SmlI CTYRAG 3 cut(s) 340, 837, 1321
SmoI CTYRAG 3 cut(s) 340, 837, 1321
SpeI ACTAGT 1 cut(s) 1430
SseBI AGGCCT 1 cut(s) 616
SsiI CCGC 4 cut(s) 270, 413, 575, 790
SspMI CTAG 4 cut(s) 92, 290, 876, 1431
StuI AGGCCT 1 cut(s) 616
StyD4I CCNGG 3 cut(s) 238, 738, 1229
TaaI ACNGT 6 cut(s) 298, 605, 1045, 1083, 1154, 1510
TaiI ACGT 2 cut(s) 496, 1130
TaqI TCGA 6 cut(s) 53, 63, 197, 560, 699, 795
TatI WGTACW 2 cut(s) 682, 767
TfiI GAWTC 1 cut(s) 60
Tru1I TTAA 3 cut(s) 1050, 1284, 1322
Tru9I TTAA 3 cut(s) 1050, 1284, 1322
TscAI CASTG 4 cut(s) 192, 597, 1014, 1088
TseFI GTSAC 5 cut(s) 425, 808, 1009, 1086, 1132
TseI GCWGC 2 cut(s) 125, 305
Tsp45I GTSAC 5 cut(s) 425, 808, 1009, 1086, 1132
TspDTI ATGAA 6 cut(s) 339, 344, 384, 939, 1240, 1503
TspGWI ACGGA 2 cut(s) 270, 1151
TspRI CASTG 4 cut(s) 192, 597, 1014, 1088
Vha464I CTTAAG 1 cut(s) 1321
XapI RAATTY 3 cut(s) 17, 497, 1201
XbaI TCTAGA 1 cut(s) 91
XceI RCATGY 1 cut(s) 1169
XcmI CCANNNNNNNNNTGG 1 cut(s) 316
XmiI GTMKAC 1 cut(s) 699
XmnI GAANNNNTTC 1 cut(s) 616
XspI CTAG 4 cut(s) 92, 290, 876, 1431
Zsp2I ATGCAT 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.