Rroxscaffold_7G00181970

homeobox-leucine zipper protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
20998543 .. 21001939
3397 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00181970.1

Sequence Viewer

Length: 1509 bp
ATGGACATGGAACCGGTGTTTTTTGAGGATTCGTCTTCGAATGGAATCGAGGAGCCCAAGGGAGTCCCCAAGTTCCTAGAAATGCAGGAGTGCTATAACATATGCATGGCAGCTTACAAAGAGGTCATGACGATGGCTGTGAAAGCAAACACCTGGGTTGTGGAGGTTCCACTGCTCGGTTCGATTGAGGAACTCCAGCAGATGTTCAGGGCTCCACCCTCTCCTGGTATGGAGATTGAGTATTCCATTGAGAGCGGTGTTGTTCCGTTTAAGCTAGAGAACGTGGTTGCTGCCTTGACAAATGTGGATGAATGGGCTTCAGCCTTGAGCAACATTGTTCATCACAGAACTGATGAAGTGCCGAGTGGTGTTATGAGTAATTTGGCGTGTAATACACCACCACATACCCGTGACAATTTCAAGGGTGTAAAAACGATAAATGCTGAACTTCTCTTGCCCATGCCATGTATGCCAACACGTAAATTCAGTTTCGTCAGGTTTTTGAGGCAAGTCATACCAGATGTATGGGCTGTTGTTGATTTATCGACTCACTATTTTCCGCACATTGACTCTACACTGAAAGTGAACTGTAAGAGAAGGCCTTCTGGGGTCATCATTAGGAGGCGTGATGATCATTCTGAGGTTATATGGATTGAGAATATGGAAGTACAGAAATGCAATGTCCAAGATAGTATATACTCTGGAGTAATCAATTCAAACCTGGCATTCGGAGCAAAGCGCTGGATTAGTACATTGTCAACCAAAGAAAAGCGGATCGAAAGTAGATTTGTCACTCTTAGACTGCCTAATAATTTTTCTCAAGCATTTTCAGTTCGTGTTGCTCTGCTGACATTGACTAGAAGGTTGAAGAAGGCCTATTTGAATTACATAACTGAGCATCCAGATGAAACTAAATGGGATTTACTATCAGACACAGGAGTTCAGATTTTGAAGGATACTGATGCAGAAGGAAAAGATAATTACATGGCAGTGACTACCTTCCGAGTCAAAGCAACTCCGAGCACAGTTTTTAACTTTCTTGTCAAAAGGACTCGGGAATTACAGTGGTCACAATTAGAAGAGATGGAAGAGCCTGAAGAAGTGATAACATTAGTCACGGACGATGACAGCAACTGTATTACTTTACATGCAAAATCAGTTATGCAAACAGAGTCTGCAGAGAATTTTGAATATGTGTTACAAGAGGCTTCCAGGGATGAGTTTTGCTCTTTCATTATAGCATCACCTATCAGCCAGTCAGAAGTTAATAGTGCTTTAGGGTTTGGAAAATCATCTTGTGCCTTAAGACCTTTTGGTTTTTCCATAATCCCTGATGGGTCTCGGGGACTCCTATCCGGTGCCTCCCTTGTAACTATGGCCTTCCAACGAGAGCTTGACGCTGATCTTGAAACTAGTGAAGTGATTGAAGGAATGAGCAATCATGTCAGCGGTATTGTTGGAGCGATAAATGAAGCATTTACAGTAGGGGAAGAAGCAACAGAGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

502

Amino Acids

56.35

Weight (kDa)

4.95

Isoelectric Point (pI)

55.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
START PF01852 38 - 256 6e-15 START domain
PDF2_C PF25797 279 - 493 7.6e-21 PDF2-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1358
AccBSI CCGCTC 1 cut(s) 255
AciI CCGC 4 cut(s) 255, 560, 772, 1449
AclWI GGATC 1 cut(s) 782
AcsI RAATTY 2 cut(s) 482, 1183
AcuI CTGAAG 2 cut(s) 303, 1116
AfaI GTAC 2 cut(s) 669, 751
AfeI AGCGCT 1 cut(s) 740
AfiI CCNNNNNNNGG 2 cut(s) 176, 224
AflII CTTAAG 1 cut(s) 1303
AflIII ACRYGT 1 cut(s) 476
AgeI ACCGGT 1 cut(s) 13
AgsI TTSAA 8 cut(s) 421, 717, 868, 883, 952, 1190, 1409, 1427
AhlI ACTAGT 1 cut(s) 1412
AjnI CCWGG 4 cut(s) 152, 223, 720, 1211
AluBI AGCT 4 cut(s) 113, 274, 1393, 1504
AluI AGCT 4 cut(s) 113, 274, 1393, 1504
Alw21I GWGCWC 1 cut(s) 1025
Alw26I GTCTC 1 cut(s) 1344
AlwI GGATC 1 cut(s) 782
AlwNI CAGNNNCTG 2 cut(s) 1134, 1175
Ama87I CYCGRG 2 cut(s) 1053, 1341
Aor51HI AGCGCT 1 cut(s) 740
AoxI GGCC 3 cut(s) 599, 873, 1377
ApeKI GCWGC 2 cut(s) 110, 290
ApoI RAATTY 2 cut(s) 482, 1183
AsiGI ACCGGT 1 cut(s) 13
Asp700I GAANNNNTTC 1 cut(s) 601
AspLEI GCGC 1 cut(s) 741
AsuHPI GGTGA 1 cut(s) 1236
AsuII TTCGAA 1 cut(s) 38
AvaI CYCGRG 2 cut(s) 1053, 1341
BanI GGYRCC 1 cut(s) 1358
BanII GRGCYC 2 cut(s) 57, 214
BbsI GAAGAC 1 cut(s) 27
Bbv12I GWGCWC 1 cut(s) 1025
BbvI GCAGC 2 cut(s) 122, 277
BccI CCATC 3 cut(s) 127, 1078, 1328
BciT130I CCWGG 4 cut(s) 154, 225, 722, 1213
BciVI GTATCC 1 cut(s) 949
BclI TGATCA 1 cut(s) 631
BcoDI GTCTC 1 cut(s) 1344
BcuI ACTAGT 1 cut(s) 1412
BfaI CTAG 4 cut(s) 77, 275, 858, 1413
BfmI CTRYAG 2 cut(s) 1176, 1505
BfoI RGCGCY 1 cut(s) 742
BfrI CTTAAG 1 cut(s) 1303
BfuI GTATCC 1 cut(s) 949
BisI GCNGC 2 cut(s) 111, 291
BlsI GCNGC 2 cut(s) 112, 292
Bme1390I CCNGG 4 cut(s) 154, 225, 722, 1213
BmeT110I CYCGRG 2 cut(s) 1053, 1341
BmiI GGNNCC 5 cut(s) 12, 54, 168, 213, 1360
BmrFI CCNGG 4 cut(s) 154, 225, 722, 1213
BmsI GCATC 3 cut(s) 907, 952, 1250
BpiI GAAGAC 1 cut(s) 27
BplI GAGNNNNNCTC 2 cut(s) 1211, 1243
BpmI CTGGAG 2 cut(s) 179, 723
Bpu14I TTCGAA 1 cut(s) 38
BpuEI CTTGAG 2 cut(s) 346, 804
BsaAI YACGTR 1 cut(s) 479
BsaI GGTCTC 1 cut(s) 1344
BsaJI CCNNGG 3 cut(s) 57, 153, 1212
BsaWI WCCGGW 2 cut(s) 13, 1355
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 2 cut(s) 176, 224
Bse118I RCCGGY 1 cut(s) 13
Bse1I ACTGG 1 cut(s) 1255
Bse3DI GCAATG 1 cut(s) 685
BseBI CCWGG 4 cut(s) 154, 225, 722, 1213
BseDI CCNNGG 3 cut(s) 57, 153, 1212
BseGI GGATG 3 cut(s) 313, 898, 1222
BseLI CCNNNNNNNGG 2 cut(s) 176, 224
BseMI GCAATG 1 cut(s) 685
BseMII CTCAG 2 cut(s) 630, 885
BseNI ACTGG 1 cut(s) 1255
BseRI GAGGAG 1 cut(s) 65
BseXI GCAGC 2 cut(s) 122, 277
BshFI GGCC 3 cut(s) 601, 875, 1379
BshNI GGYRCC 1 cut(s) 1358
BshTI ACCGGT 1 cut(s) 13
BsiHKAI GWGCWC 1 cut(s) 1025
BsiHKCI CYCGRG 2 cut(s) 1053, 1341
BsiSI CCGG 2 cut(s) 14, 1356
BslFI GGGAC 2 cut(s) 50, 1359
BslI CCNNNNNNNGG 2 cut(s) 176, 224
BsmAI GTCTC 1 cut(s) 1344
BsmFI GGGAC 2 cut(s) 50, 1359
BsmI GAATGC 1 cut(s) 725
BsnI GGCC 3 cut(s) 601, 875, 1379
Bso31I GGTCTC 1 cut(s) 1344
BsoBI CYCGRG 2 cut(s) 1053, 1341
Bsp119I TTCGAA 1 cut(s) 38
Bsp1286I GDGCHC 3 cut(s) 57, 214, 1025
Bsp143I GATC 3 cut(s) 631, 774, 1402
BspACI CCGC 4 cut(s) 255, 560, 772, 1449
BspANI GGCC 3 cut(s) 601, 875, 1379
BspCNI CTCAG 2 cut(s) 631, 886
BspHI TCATGA 1 cut(s) 126
BspLI GGNNCC 5 cut(s) 12, 54, 168, 213, 1360
BspMAI CTGCAG 1 cut(s) 1180
BspPI GGATC 1 cut(s) 782
BspQI GCTCTTC 1 cut(s) 1083
BspT104I TTCGAA 1 cut(s) 38
BspT107I GGYRCC 1 cut(s) 1358
BspTI CTTAAG 1 cut(s) 1303
BspTNI GGTCTC 1 cut(s) 1344
BsrBI CCGCTC 1 cut(s) 255
BsrDI GCAATG 1 cut(s) 685
BsrFI RCCGGY 1 cut(s) 13
BsrI ACTGG 1 cut(s) 1255
BssAI RCCGGY 1 cut(s) 13
BssECI CCNNGG 3 cut(s) 57, 153, 1212
BssMI GATC 3 cut(s) 631, 774, 1402
BssT1I CCWWGG 1 cut(s) 57
Bst2UI CCWGG 4 cut(s) 154, 225, 722, 1213
Bst4CI ACNGT 5 cut(s) 590, 1027, 1065, 1136, 1483
Bst6I CTCTTC 2 cut(s) 1074, 1083
BstAFI CTTAAG 1 cut(s) 1303
BstBAI YACGTR 1 cut(s) 479
BstBI TTCGAA 1 cut(s) 38
BstDEI CTNAG 3 cut(s) 639, 797, 894
BstF5I GGATG 3 cut(s) 313, 898, 1222
BstH2I RGCGCY 1 cut(s) 742
BstHHI GCGC 1 cut(s) 741
BstKTI GATC 3 cut(s) 634, 777, 1405
BstMAI GTCTC 1 cut(s) 1344
BstMBI GATC 3 cut(s) 631, 774, 1402
BstMWI GCNNNNNNNGC 3 cut(s) 143, 469, 731
BstNI CCWGG 4 cut(s) 154, 225, 722, 1213
BstNSI RCATGY 1 cut(s) 1151
BstSCI CCNGG 4 cut(s) 152, 223, 720, 1211
BstSFI CTRYAG 2 cut(s) 1176, 1505
BstV1I GCAGC 2 cut(s) 122, 277
BstV2I GAAGAC 1 cut(s) 27
BstXI CCANNNNNNTGG 1 cut(s) 525
BsuI GTATCC 1 cut(s) 949
BsuRI GGCC 3 cut(s) 601, 875, 1379
BtsCI GGATG 3 cut(s) 313, 898, 1222
BtsI GCAGTG 2 cut(s) 170, 996
BtsIMutI CAGTG 4 cut(s) 170, 575, 996, 1070
CaiI CAGNNNCTG 2 cut(s) 1134, 1175
CciI TCATGA 1 cut(s) 126
CfoI GCGC 1 cut(s) 741
Cfr10I RCCGGY 1 cut(s) 13
CseI GACGC 1 cut(s) 1406
Csp6I GTAC 2 cut(s) 668, 750
CspAI ACCGGT 1 cut(s) 13
CviAII CATG 8 cut(s) 7, 106, 127, 460, 465, 985, 1148, 1442
CviQI GTAC 2 cut(s) 668, 750
DdeI CTNAG 3 cut(s) 639, 797, 894
DpnI GATC 3 cut(s) 633, 776, 1404
DpnII GATC 3 cut(s) 631, 774, 1402
Eam1104I CTCTTC 2 cut(s) 1074, 1083
EarI CTCTTC 2 cut(s) 1074, 1083
Eco130I CCWWGG 1 cut(s) 57
Eco147I AGGCCT 2 cut(s) 601, 875
Eco24I GRGCYC 2 cut(s) 57, 214
Eco31I GGTCTC 1 cut(s) 1344
Eco47III AGCGCT 1 cut(s) 740
Eco57I CTGAAG 2 cut(s) 303, 1116
Eco88I CYCGRG 2 cut(s) 1053, 1341
EcoRII CCWGG 4 cut(s) 152, 223, 720, 1211
EcoT14I CCWWGG 1 cut(s) 57
EcoT22I ATGCAT 1 cut(s) 107
EcoT38I GRGCYC 2 cut(s) 57, 214
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 8 cut(s) 10, 109, 130, 463, 468, 988, 1151, 1445
FaqI GGGAC 2 cut(s) 50, 1359
FatI CATG 8 cut(s) 6, 105, 126, 459, 464, 984, 1147, 1441
FauNDI CATATG 1 cut(s) 101
FbaI TGATCA 1 cut(s) 631
Fnu4HI GCNGC 2 cut(s) 111, 291
FokI GGATG 3 cut(s) 320, 885, 1229
FriOI GRGCYC 2 cut(s) 57, 214
Fsp4HI GCNGC 2 cut(s) 111, 291
FspBI CTAG 4 cut(s) 77, 275, 858, 1413
GlaI GCGC 1 cut(s) 740
GluI GCNGC 2 cut(s) 111, 291
GsuI CTGGAG 2 cut(s) 179, 723
HaeII RGCGCY 1 cut(s) 742
HaeIII GGCC 3 cut(s) 601, 875, 1379
HapII CCGG 2 cut(s) 14, 1356
HgaI GACGC 1 cut(s) 1406
HhaI GCGC 1 cut(s) 741
Hin1II CATG 8 cut(s) 10, 109, 130, 463, 468, 988, 1151, 1445
Hin6I GCGC 1 cut(s) 739
HinP1I GCGC 1 cut(s) 739
HincII GTYRAC 1 cut(s) 759
HindII GTYRAC 1 cut(s) 759
HinfI GANTC 9 cut(s) 29, 45, 63, 547, 569, 1005, 1051, 1172, 1347
HpaII CCGG 2 cut(s) 14, 1356
HphI GGTGA 1 cut(s) 1236
Hpy166II GTNNAC 2 cut(s) 586, 759
Hpy188I TCNGA 7 cut(s) 640, 731, 931, 945, 1004, 1020, 1261
Hpy188III TCNNGA 5 cut(s) 127, 702, 902, 1055, 1406
Hpy8I GTNNAC 2 cut(s) 586, 759
HpyAV CCTTC 9 cut(s) 591, 612, 855, 865, 946, 962, 1009, 1390, 1421
HpyCH4III ACNGT 5 cut(s) 590, 1027, 1065, 1136, 1483
HpyCH4IV ACGT 2 cut(s) 282, 478
HpyCH4V TGCA 7 cut(s) 85, 105, 678, 965, 1151, 1165, 1178
HpyF10VI GCNNNNNNNGC 3 cut(s) 143, 469, 731
HpyF3I CTNAG 3 cut(s) 639, 797, 894
HpySE526I ACGT 2 cut(s) 282, 478
Hsp92II CATG 8 cut(s) 10, 109, 130, 463, 468, 988, 1151, 1445
HspAI GCGC 1 cut(s) 739
Ksp22I TGATCA 1 cut(s) 631
Kzo9I GATC 3 cut(s) 631, 774, 1402
LguI GCTCTTC 1 cut(s) 1083
LmnI GCTCC 4 cut(s) 52, 217, 731, 1460
Lsp1109I GCAGC 2 cut(s) 122, 277
LweI GCATC 3 cut(s) 907, 952, 1250
MaeI CTAG 4 cut(s) 77, 275, 858, 1413
MaeII ACGT 2 cut(s) 282, 478
MaeIII GTNAC 7 cut(s) 410, 790, 991, 1068, 1114, 1197, 1369
MalI GATC 3 cut(s) 633, 776, 1404
MbiI CCGCTC 1 cut(s) 255
MboI GATC 3 cut(s) 631, 774, 1402
MboII GAAGA 6 cut(s) 27, 880, 1091, 1100, 1109, 1502
MhlI GDGCHC 3 cut(s) 57, 214, 1025
MlyI GAGTC 7 cut(s) 72, 541, 563, 1014, 1045, 1181, 1341
MmeI TCCRAC 2 cut(s) 1408, 1438
Mph1103I ATGCAT 1 cut(s) 107
MroXI GAANNNNTTC 1 cut(s) 601
MseI TTAA 4 cut(s) 270, 1032, 1266, 1304
MslI CAYNNNNRTG 5 cut(s) 104, 131, 408, 903, 989
MspA1I CMGCKG 1 cut(s) 1449
MspCI CTTAAG 1 cut(s) 1303
MspI CCGG 2 cut(s) 14, 1356
MspR9I CCNGG 4 cut(s) 154, 225, 722, 1213
Mva1269I GAATGC 1 cut(s) 725
MvaI CCWGG 4 cut(s) 154, 225, 722, 1213
MwoI GCNNNNNNNGC 3 cut(s) 143, 469, 731
NdeI CATATG 1 cut(s) 101
NdeII GATC 3 cut(s) 631, 774, 1402
NlaIII CATG 8 cut(s) 10, 109, 130, 463, 468, 988, 1151, 1445
NlaIV GGNNCC 5 cut(s) 12, 54, 168, 213, 1360
NmeAIII GCCGAG 1 cut(s) 387
NmuCI GTSAC 5 cut(s) 410, 790, 991, 1068, 1114
NsiI ATGCAT 1 cut(s) 107
NspI RCATGY 1 cut(s) 1151
NspV TTCGAA 1 cut(s) 38
PagI TCATGA 1 cut(s) 126
PceI AGGCCT 2 cut(s) 601, 875
PciSI GCTCTTC 1 cut(s) 1083
PctI GAATGC 1 cut(s) 725
PdmI GAANNNNTTC 1 cut(s) 601
PfeI GAWTC 2 cut(s) 29, 45
PinAI ACCGGT 1 cut(s) 13
PkrI GCNGC 2 cut(s) 112, 292
PleI GAGTC 7 cut(s) 71, 541, 563, 1013, 1045, 1180, 1341
PpsI GAGTC 7 cut(s) 71, 541, 563, 1013, 1045, 1180, 1341
Ppu21I YACGTR 1 cut(s) 479
Psp6I CCWGG 4 cut(s) 152, 223, 720, 1211
PspGI CCWGG 4 cut(s) 152, 223, 720, 1211
PspN4I GGNNCC 5 cut(s) 12, 54, 168, 213, 1360
PstI CTGCAG 1 cut(s) 1180
PstNI CAGNNNCTG 2 cut(s) 1134, 1175
RsaI GTAC 2 cut(s) 669, 751
RsaNI GTAC 2 cut(s) 668, 750
RseI CAYNNNNRTG 5 cut(s) 104, 131, 408, 903, 989
SapI GCTCTTC 1 cut(s) 1083
SaqAI TTAA 4 cut(s) 270, 1032, 1266, 1304
SatI GCNGC 2 cut(s) 111, 291
Sau3AI GATC 3 cut(s) 631, 774, 1402
SchI GAGTC 7 cut(s) 72, 541, 563, 1014, 1045, 1181, 1341
ScrFI CCNGG 4 cut(s) 154, 225, 722, 1213
SduI GDGCHC 3 cut(s) 57, 214, 1025
SfaNI GCATC 3 cut(s) 907, 952, 1250
SfcI CTRYAG 2 cut(s) 1176, 1505
SfuI TTCGAA 1 cut(s) 38
SmiMI CAYNNNNRTG 5 cut(s) 104, 131, 408, 903, 989
SmlI CTYRAG 3 cut(s) 325, 819, 1303
SmoI CTYRAG 3 cut(s) 325, 819, 1303
SpeI ACTAGT 1 cut(s) 1412
SseBI AGGCCT 2 cut(s) 601, 875
SsiI CCGC 4 cut(s) 255, 560, 772, 1449
SspMI CTAG 4 cut(s) 77, 275, 858, 1413
StuI AGGCCT 2 cut(s) 601, 875
StyD4I CCNGG 4 cut(s) 152, 223, 720, 1211
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 5 cut(s) 590, 1027, 1065, 1136, 1483
TaiI ACGT 2 cut(s) 285, 481
TaqI TCGA 5 cut(s) 38, 48, 182, 545, 777
TatI WGTACW 2 cut(s) 667, 749
TfiI GAWTC 2 cut(s) 29, 45
Tru1I TTAA 4 cut(s) 270, 1032, 1266, 1304
Tru9I TTAA 4 cut(s) 270, 1032, 1266, 1304
TscAI CASTG 4 cut(s) 177, 582, 996, 1070
TseFI GTSAC 5 cut(s) 410, 790, 991, 1068, 1114
TseI GCWGC 2 cut(s) 110, 290
Tsp45I GTSAC 5 cut(s) 410, 790, 991, 1068, 1114
TspDTI ATGAA 6 cut(s) 324, 329, 369, 921, 1222, 1485
TspGWI ACGGA 2 cut(s) 255, 1133
TspRI CASTG 4 cut(s) 177, 582, 996, 1070
Vha464I CTTAAG 1 cut(s) 1303
XapI RAATTY 2 cut(s) 482, 1183
XceI RCATGY 1 cut(s) 1151
XmnI GAANNNNTTC 1 cut(s) 601
XspI CTAG 4 cut(s) 77, 275, 858, 1413
Zsp2I ATGCAT 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.