MD00G1060500.v1.1

Homeobox-leucine zipper protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0014662
Physical Location & Seq
Forward (+)
11211643 .. 11212157
515 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1060500.v1.1.491

Sequence Viewer

Length: 363 bp
ATGCAAAATATGAAATATAACTGTGATGCTCAAGGACAACCTTATTTAGTTATCTCCTCGGATCCGGATGAGTCTTCTTCCGATGAAGAGATCGATGAGAAATCGGATAATGGGTTCCTACAACTACAAGAGGCAAATAACATCTGCCTTGCAGCTTACAGAGAGGTTATGACATTGGCTATCAACGCAAAAGCTTGGAAGATGGGCCTTCCACCACTCGGTTCAATCGAGGATATACAACAAATGTTCAAGACTCCGCCTTCACCCAGAATGAAAGTAGAATCCTCCGTTGAGCGCATCATTCTTCCTCTTTCTCCAAGGTTTTTGATAACTACTATGATTGACGTGGTGAGATTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
START

Protein Analysis

121

Amino Acids

13.53

Weight (kDa)

4.55

Isoelectric Point (pI)

58.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 64
AciI CCGC 1 cut(s) 257
AclWI GGATC 2 cut(s) 56, 69
AfiI CCNNNNNNNGG 1 cut(s) 218
AgsI TTSAA 2 cut(s) 225, 250
AjiI CACGTC 1 cut(s) 346
AloI GAACNNNNNNTCC 2 cut(s) 98, 130
AluBI AGCT 2 cut(s) 155, 194
AluI AGCT 2 cut(s) 155, 194
AlwI GGATC 2 cut(s) 56, 69
Aor13HI TCCGGA 1 cut(s) 64
AoxI GGCC 1 cut(s) 205
ApeKI GCWGC 1 cut(s) 152
AspLEI GCGC 1 cut(s) 297
AspS9I GGNCC 1 cut(s) 205
AsuHPI GGTGA 2 cut(s) 255, 361
BamHI GGATCC 1 cut(s) 61
BbsI GAAGAC 1 cut(s) 66
BbvI GCAGC 1 cut(s) 164
BccI CCATC 1 cut(s) 196
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
BmgBI CACGTC 1 cut(s) 346
BmgT120I GGNCC 1 cut(s) 205
BmiI GGNNCC 2 cut(s) 63, 116
BmsI GCATC 2 cut(s) 16, 306
BpiI GAAGAC 1 cut(s) 66
BpuEI CTTGAG 1 cut(s) 15
Bsa29I ATCGAT 1 cut(s) 93
BsaJI CCNNGG 2 cut(s) 57, 317
BsaWI WCCGGW 1 cut(s) 64
Bsc4I CCNNNNNNNGG 1 cut(s) 218
BseAI TCCGGA 1 cut(s) 64
BseCI ATCGAT 1 cut(s) 93
BseDI CCNNGG 2 cut(s) 57, 317
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 218
BseRI GAGGAG 1 cut(s) 46
BseXI GCAGC 1 cut(s) 164
BshFI GGCC 1 cut(s) 207
BshVI ATCGAT 1 cut(s) 93
BsiSI CCGG 1 cut(s) 65
BslI CCNNNNNNNGG 1 cut(s) 218
BsnI GGCC 1 cut(s) 207
Bsp13I TCCGGA 1 cut(s) 64
Bsp143I GATC 2 cut(s) 61, 90
BspACI CCGC 1 cut(s) 257
BspANI GGCC 1 cut(s) 207
BspDI ATCGAT 1 cut(s) 93
BspEI TCCGGA 1 cut(s) 64
BspLI GGNNCC 2 cut(s) 63, 116
BspPI GGATC 2 cut(s) 56, 69
BssECI CCNNGG 2 cut(s) 57, 317
BssMI GATC 2 cut(s) 61, 90
BssT1I CCWWGG 1 cut(s) 317
Bst4CI ACNGT 1 cut(s) 23
Bst6I CTCTTC 1 cut(s) 81
BstF5I GGATG 1 cut(s) 73
BstHHI GCGC 1 cut(s) 297
BstKTI GATC 2 cut(s) 64, 93
BstMBI GATC 2 cut(s) 61, 90
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstV1I GCAGC 1 cut(s) 164
BstV2I GAAGAC 1 cut(s) 66
BstX2I RGATCY 1 cut(s) 61
BstYI RGATCY 1 cut(s) 61
Bsu15I ATCGAT 1 cut(s) 93
BsuRI GGCC 1 cut(s) 207
BsuTUI ATCGAT 1 cut(s) 93
BtrI CACGTC 1 cut(s) 346
BtsCI GGATG 1 cut(s) 73
CfoI GCGC 1 cut(s) 297
Cfr13I GGNCC 1 cut(s) 205
ClaI ATCGAT 1 cut(s) 93
CviJI RGCY 4 cut(s) 155, 179, 194, 207
CviKI_1 RGCY 4 cut(s) 155, 179, 194, 207
DpnI GATC 2 cut(s) 63, 92
DpnII GATC 2 cut(s) 61, 90
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
EciI GGCGGA 1 cut(s) 246
Eco130I CCWWGG 1 cut(s) 317
EcoT14I CCWWGG 1 cut(s) 317
ErhI CCWWGG 1 cut(s) 317
FaiI YATR 5 cut(s) 11, 18, 170, 236, 338
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 153
GlaI GCGC 1 cut(s) 296
GluI GCNGC 1 cut(s) 153
HaeIII GGCC 1 cut(s) 207
HapII CCGG 1 cut(s) 65
HhaI GCGC 1 cut(s) 297
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HindIII AAGCTT 1 cut(s) 192
HinfI GANTC 3 cut(s) 71, 253, 281
HpaII CCGG 1 cut(s) 65
HphI GGTGA 2 cut(s) 255, 361
Hpy188I TCNGA 3 cut(s) 61, 82, 106
Hpy188III TCNNGA 2 cut(s) 65, 250
HpyAV CCTTC 2 cut(s) 218, 270
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4IV ACGT 1 cut(s) 345
HpyCH4V TGCA 2 cut(s) 4, 152
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpySE526I ACGT 1 cut(s) 345
HspAI GCGC 1 cut(s) 295
Kpn2I TCCGGA 1 cut(s) 64
Kzo9I GATC 2 cut(s) 61, 90
LpnPI CCDG 2 cut(s) 78, 280
Lsp1109I GCAGC 1 cut(s) 164
LweI GCATC 2 cut(s) 16, 306
MaeII ACGT 1 cut(s) 345
MalI GATC 2 cut(s) 63, 92
MboI GATC 2 cut(s) 61, 90
MboII GAAGA 5 cut(s) 66, 69, 98, 211, 296
MflI RGATCY 1 cut(s) 61
MlyI GAGTC 2 cut(s) 80, 247
MnlI CCTC 6 cut(s) 67, 124, 157, 223, 295, 318
MroI TCCGGA 1 cut(s) 64
MseI TTAA 1 cut(s) 361
MspI CCGG 1 cut(s) 65
MwoI GCNNNNNNNGC 1 cut(s) 185
NdeII GATC 2 cut(s) 61, 90
NlaIV GGNNCC 2 cut(s) 63, 116
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PfeI GAWTC 1 cut(s) 281
PkrI GCNGC 1 cut(s) 154
PleI GAGTC 2 cut(s) 79, 247
PpsI GAGTC 2 cut(s) 79, 247
PspN4I GGNNCC 2 cut(s) 63, 116
PspPI GGNCC 1 cut(s) 205
PsuI RGATCY 1 cut(s) 61
SaqAI TTAA 1 cut(s) 361
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 2 cut(s) 61, 90
Sau96I GGNCC 1 cut(s) 205
SchI GAGTC 2 cut(s) 80, 247
SetI ASST 6 cut(s) 43, 157, 168, 196, 323, 348
SfaNI GCATC 2 cut(s) 16, 306
SmlI CTYRAG 1 cut(s) 30
SmoI CTYRAG 1 cut(s) 30
SsiI CCGC 1 cut(s) 257
StyI CCWWGG 1 cut(s) 317
TaaI ACNGT 1 cut(s) 23
TaiI ACGT 1 cut(s) 348
TaqI TCGA 2 cut(s) 93, 228
TfiI GAWTC 1 cut(s) 281
Tru1I TTAA 1 cut(s) 361
Tru9I TTAA 1 cut(s) 361
TseI GCWGC 1 cut(s) 152
TspDTI ATGAA 3 cut(s) 26, 99, 287
TspGWI ACGGA 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.