MD00G1060600.v1.1

Homeobox-leucine zipper protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0014662
Physical Location & Seq
Forward (+)
11213427 .. 11219369
5943 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1060600.v1.1.491

Sequence Viewer

Length: 474 bp
ATGCAGGTCAATGCTGAATTTCACTTGCCTACACCATTTGTGCAAAAACAAAAATACCGTTTTGTCAGATTTGTACGGAGCGTCATGGAAGATACATGGGCTGTAGTTGATCTATCAACTGATTATTTTCAGCAACATTCACTTGATTCTGCTGCATCGAAAGTGAACTGTCTTCGGAGGCCATCTGGGGTCATTGTCAAGCGCCTCAGGTCGTATGAAAATTTATCCGAGGTTATATGGATTGAAAATATGGAAGTGAAAGATTGCAAAGTGGATGATGATGAGGACGACGACGATATGCAGTCAGGAACAATGAATTCAAACCTAGCATTCGACGCAAAGCACTGGGTTAATATTTTGTCATCGAATCACAGAAAAAGATGTGCCAACCCTAAAATTTCATATATATTTGATCAAGTGACTCAAGGGGATAAGAATGAACTGTCAATGGAAACCCTAATAAAAATTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
START

Protein Analysis

158

Amino Acids

18.3

Weight (kDa)

5.37

Isoelectric Point (pI)

36.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
START PF01852 4 - 121 1.5e-08 START domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 4 cut(s) 17, 220, 316, 396
AfaI GTAC 1 cut(s) 75
AgsI TTSAA 2 cut(s) 245, 321
AoxI GGCC 1 cut(s) 179
ApeKI GCWGC 1 cut(s) 152
ApoI RAATTY 4 cut(s) 17, 220, 316, 396
AspLEI GCGC 1 cut(s) 204
AxyI CCTNAGG 1 cut(s) 206
BbsI GAAGAC 1 cut(s) 164
BbvI GCAGC 1 cut(s) 139
BccI CCATC 1 cut(s) 190
BclI TGATCA 1 cut(s) 412
BfaI CTAG 1 cut(s) 326
BfmI CTRYAG 1 cut(s) 102
BfoI RGCGCY 1 cut(s) 205
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
BmrI ACTGGG 1 cut(s) 355
BmsI GCATC 1 cut(s) 164
BmuI ACTGGG 1 cut(s) 355
BpiI GAAGAC 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 408
BsaJI CCNNGG 1 cut(s) 228
Bse1I ACTGG 1 cut(s) 350
Bse21I CCTNAGG 1 cut(s) 206
BseDI CCNNGG 1 cut(s) 228
BseGI GGATG 1 cut(s) 280
BseMII CTCAG 1 cut(s) 220
BseNI ACTGG 1 cut(s) 350
BseXI GCAGC 1 cut(s) 139
BshFI GGCC 1 cut(s) 181
BsmI GAATGC 1 cut(s) 329
BsnI GGCC 1 cut(s) 181
Bsp143I GATC 2 cut(s) 109, 412
BspANI GGCC 1 cut(s) 181
BspCNI CTCAG 1 cut(s) 219
BsrI ACTGG 1 cut(s) 350
BssECI CCNNGG 1 cut(s) 228
BssMI GATC 2 cut(s) 109, 412
Bst4CI ACNGT 3 cut(s) 59, 170, 444
BstDEI CTNAG 1 cut(s) 206
BstF5I GGATG 1 cut(s) 280
BstH2I RGCGCY 1 cut(s) 205
BstHHI GCGC 1 cut(s) 204
BstKTI GATC 2 cut(s) 112, 415
BstMBI GATC 2 cut(s) 109, 412
BstMWI GCNNNNNNNGC 1 cut(s) 335
BstSFI CTRYAG 1 cut(s) 102
BstV1I GCAGC 1 cut(s) 139
BstV2I GAAGAC 1 cut(s) 164
Bsu36I CCTNAGG 1 cut(s) 206
BsuRI GGCC 1 cut(s) 181
BtsCI GGATG 1 cut(s) 280
BtsIMutI CAGTG 1 cut(s) 343
CfoI GCGC 1 cut(s) 204
CseI GACGC 2 cut(s) 70, 344
Csp6I GTAC 1 cut(s) 74
CviAII CATG 2 cut(s) 85, 96
CviJI RGCY 2 cut(s) 101, 181
CviKI_1 RGCY 2 cut(s) 101, 181
CviQI GTAC 1 cut(s) 74
DdeI CTNAG 1 cut(s) 206
DpnI GATC 2 cut(s) 111, 414
DpnII GATC 2 cut(s) 109, 412
Eco81I CCTNAGG 1 cut(s) 206
EcoRI GAATTC 1 cut(s) 316
FaeI CATG 2 cut(s) 88, 99
FatI CATG 2 cut(s) 84, 95
FbaI TGATCA 1 cut(s) 412
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 1 cut(s) 287
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 1 cut(s) 326
GlaI GCGC 1 cut(s) 203
GluI GCNGC 1 cut(s) 153
HaeII RGCGCY 1 cut(s) 205
HaeIII GGCC 1 cut(s) 181
HgaI GACGC 2 cut(s) 70, 344
HhaI GCGC 1 cut(s) 204
Hin1II CATG 2 cut(s) 88, 99
Hin6I GCGC 1 cut(s) 202
HinP1I GCGC 1 cut(s) 202
HinfI GANTC 3 cut(s) 146, 367, 421
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 3 cut(s) 68, 177, 229
Hpy188III TCNNGA 1 cut(s) 306
Hpy8I GTNNAC 1 cut(s) 166
Hpy99I CGWCG 3 cut(s) 293, 296, 338
HpyCH4III ACNGT 3 cut(s) 59, 170, 444
HpyCH4V TGCA 5 cut(s) 4, 43, 155, 267, 301
HpyF10VI GCNNNNNNNGC 1 cut(s) 335
HpyF3I CTNAG 1 cut(s) 206
Hsp92II CATG 2 cut(s) 88, 99
HspAI GCGC 1 cut(s) 202
Ksp22I TGATCA 1 cut(s) 412
Kzo9I GATC 2 cut(s) 109, 412
LmnI GCTCC 1 cut(s) 78
LpnPI CCDG 4 cut(s) 171, 193, 291, 331
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 1 cut(s) 164
MaeI CTAG 1 cut(s) 326
MaeIII GTNAC 1 cut(s) 418
MalI GATC 2 cut(s) 111, 414
MboI GATC 2 cut(s) 109, 412
MboII GAAGA 2 cut(s) 101, 164
MluCI AATT 5 cut(s) 17, 220, 316, 396, 465
MlyI GAGTC 1 cut(s) 415
MnlI CCTC 4 cut(s) 171, 215, 223, 277
MseI TTAA 1 cut(s) 351
Mva1269I GAATGC 1 cut(s) 329
MwoI GCNNNNNNNGC 1 cut(s) 335
NdeII GATC 2 cut(s) 109, 412
NlaIII CATG 2 cut(s) 88, 99
NmuCI GTSAC 1 cut(s) 418
PctI GAATGC 1 cut(s) 329
PfeI GAWTC 2 cut(s) 146, 367
PkrI GCNGC 1 cut(s) 154
PleI GAGTC 1 cut(s) 415
PpsI GAGTC 1 cut(s) 415
RsaI GTAC 1 cut(s) 75
RsaNI GTAC 1 cut(s) 74
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 2 cut(s) 109, 412
SchI GAGTC 1 cut(s) 415
SetI ASST 4 cut(s) 9, 212, 234, 327
SfaNI GCATC 1 cut(s) 164
SfcI CTRYAG 1 cut(s) 102
SmlI CTYRAG 1 cut(s) 423
SmoI CTYRAG 1 cut(s) 423
Sse9I AATT 5 cut(s) 17, 220, 316, 396, 465
SspI AATATT 1 cut(s) 355
SspMI CTAG 1 cut(s) 326
TaaI ACNGT 3 cut(s) 59, 170, 444
TaqI TCGA 3 cut(s) 158, 333, 365
TasI AATT 5 cut(s) 17, 220, 316, 396, 465
TfiI GAWTC 2 cut(s) 146, 367
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TscAI CASTG 1 cut(s) 350
TseFI GTSAC 1 cut(s) 418
TseI GCWGC 1 cut(s) 152
Tsp45I GTSAC 1 cut(s) 418
TspDTI ATGAA 4 cut(s) 231, 329, 390, 453
TspGWI ACGGA 1 cut(s) 91
TspRI CASTG 1 cut(s) 350
XapI RAATTY 4 cut(s) 17, 220, 316, 396
XspI CTAG 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.