Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8407681.1

Orthogroup ID

OG0014662

Physical Location & Seq

Genomic Coordinates Forward (+)

337 .. 1265

Gene Structure 929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8407681.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atggggttaatgggtttccatatgttcactaataacactgacattgtcaagttttatgaggcgtcgtcttcgaatggaatcgaggagccaaagggagtgcccaagtttctagaaatgcaggagtgctataacatatgcatggcagcttacaaagaggtcatgactatggctgtgaaagcaaacacttgggttgtggaggttccactgctcggttcgattgaggaactccagcagatgttcagggctccaccctctcctgggatggagattgagtattccattgacagcggtgttgttccgttcaagctagagactgtggttgctgccatgacaaatgtggatgaatgggcttcagccttgagcaacattgttcatcacagaactgatgaagtgccgagtggtgttatgagtaatttggcgtgtaatacaccgccacatacccgtgacaatttcaagggtgtaaaaacgataaatgctgaacttctcttgcccatgccatgtatgccaacacgtaaattcagtttcgtcaggtttttgaggcaagtcataccagatgaggcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

START

Protein Analysis

187

Amino Acids

20.91

Weight (kDa)

5.1

Isoelectric Point (pI)

51.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014662)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g20620 FvH4_2g20620
malus_domestica	MD00G1060500.v1.1 MD00G1060600.v1.1
pyrus_communis	pycom10g15300
rosa_chinensis	RchiOBHm_Chr6g0286791
rosa_laevigata	RLG00000012536
rosa_multiflora	Rmu_co8407681.1_g000001 Rmu_sc0007546.1_g000021 Rmu_ssc0000279.1_g000001
rosa_roxburghii	Rroxscaffold_7G00181970
rosa_rugosa	Rorug06G0183000
rosa_samantha	Rh6AG295600 Rh6BG300000 Rh6CG307700 Rh6DG291600
rosa_wichuraiana	Rw6G025490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	288, 431
AcsI	RAATTY	1 cut(s)	515
AcuI	CTGAAG	1 cut(s)	336
AcyI	GRCGYC	1 cut(s)	62
AfiI	CCNNNNNNNGG	3 cut(s)	209, 257, 258
AflIII	ACRYGT	1 cut(s)	509
AgsI	TTSAA	2 cut(s)	304, 454
AjnI	CCWGG	1 cut(s)	256
AluBI	AGCT	2 cut(s)	146, 307
AluI	AGCT	2 cut(s)	146, 307
Alw26I	GTCTC	1 cut(s)	305
ApeKI	GCWGC	2 cut(s)	143, 323
ApoI	RAATTY	1 cut(s)	515
AsuII	TTCGAA	1 cut(s)	71
BaeGI	GKGCMC	1 cut(s)	102
BanII	GRGCYC	1 cut(s)	247
BbsI	GAAGAC	1 cut(s)	60
BbvI	GCAGC	2 cut(s)	155, 310
BccI	CCATC	1 cut(s)	256
BciT130I	CCWGG	1 cut(s)	258
BcoDI	GTCTC	1 cut(s)	305
BfaI	CTAG	2 cut(s)	110, 308
BisI	GCNGC	2 cut(s)	144, 324
BlsI	GCNGC	2 cut(s)	145, 325
Bme1390I	CCNGG	1 cut(s)	258
BmiI	GGNNCC	3 cut(s)	87, 201, 246
BmrFI	CCNGG	1 cut(s)	258
BpiI	GAAGAC	1 cut(s)	60
BpmI	CTGGAG	1 cut(s)	212
Bpu14I	TTCGAA	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	379
BsaAI	YACGTR	1 cut(s)	512
BsaHI	GRCGYC	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	257
BsaXI	ACNNNNNCTCC	2 cut(s)	257, 287
Bsc4I	CCNNNNNNNGG	3 cut(s)	209, 257, 258
BseBI	CCWGG	1 cut(s)	258
BseDI	CCNNGG	1 cut(s)	257
BseGI	GGATG	2 cut(s)	267, 346
BseLI	CCNNNNNNNGG	3 cut(s)	209, 257, 258
BseRI	GAGGAG	1 cut(s)	98
BseSI	GKGCMC	1 cut(s)	102
BseXI	GCAGC	2 cut(s)	155, 310
BslI	CCNNNNNNNGG	3 cut(s)	209, 257, 258
BsmAI	GTCTC	1 cut(s)	305
Bsp119I	TTCGAA	1 cut(s)	71
Bsp1286I	GDGCHC	2 cut(s)	102, 247
BspACI	CCGC	2 cut(s)	288, 431
BspHI	TCATGA	1 cut(s)	159
BspLI	GGNNCC	3 cut(s)	87, 201, 246
BspT104I	TTCGAA	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	257
BssNI	GRCGYC	1 cut(s)	62
Bst2UI	CCWGG	1 cut(s)	258
Bst4CI	ACNGT	1 cut(s)	316
BstACI	GRCGYC	1 cut(s)	62
BstBAI	YACGTR	1 cut(s)	512
BstBI	TTCGAA	1 cut(s)	71
BstF5I	GGATG	2 cut(s)	267, 346
BstMAI	GTCTC	1 cut(s)	305
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 502
BstNI	CCWGG	1 cut(s)	258
BstSCI	CCNGG	1 cut(s)	256
BstSLI	GKGCMC	1 cut(s)	102
BstV1I	GCAGC	2 cut(s)	155, 310
BstV2I	GAAGAC	1 cut(s)	60
BtsCI	GGATG	2 cut(s)	267, 346
BtsI	GCAGTG	1 cut(s)	203
BtsIMutI	CAGTG	2 cut(s)	36, 203
CciI	TCATGA	1 cut(s)	159
CseI	GACGC	1 cut(s)	51
CviAII	CATG	5 cut(s)	139, 160, 328, 493, 498
CviJI	RGCY	7 cut(s)	88, 146, 170, 245, 307, 350, 356
CviKI_1	RGCY	7 cut(s)	88, 146, 170, 245, 307, 350, 356
Eco24I	GRGCYC	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	336
EcoRII	CCWGG	1 cut(s)	256
EcoT22I	ATGCAT	1 cut(s)	140
EcoT38I	GRGCYC	1 cut(s)	247
FaeI	CATG	5 cut(s)	142, 163, 331, 496, 501
FatI	CATG	5 cut(s)	138, 159, 327, 492, 497
FauNDI	CATATG	2 cut(s)	21, 134
Fnu4HI	GCNGC	2 cut(s)	144, 324
FokI	GGATG	2 cut(s)	274, 353
FriOI	GRGCYC	1 cut(s)	247
Fsp4HI	GCNGC	2 cut(s)	144, 324
FspBI	CTAG	2 cut(s)	110, 308
GluI	GCNGC	2 cut(s)	144, 324
GsuI	CTGGAG	1 cut(s)	212
HgaI	GACGC	1 cut(s)	51
Hin1I	GRCGYC	1 cut(s)	62
Hin1II	CATG	5 cut(s)	142, 163, 331, 496, 501
HinfI	GANTC	1 cut(s)	78
Hpy166II	GTNNAC	1 cut(s)	27
Hpy188III	TCNNGA	2 cut(s)	110, 160
Hpy8I	GTNNAC	1 cut(s)	27
Hpy99I	CGWCG	1 cut(s)	67
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4IV	ACGT	1 cut(s)	511
HpyCH4V	TGCA	2 cut(s)	118, 138
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 502
HpySE526I	ACGT	1 cut(s)	511
Hsp92I	GRCGYC	1 cut(s)	62
Hsp92II	CATG	5 cut(s)	142, 163, 331, 496, 501
LmnI	GCTCC	2 cut(s)	85, 250
LpnPI	CCDG	6 cut(s)	104, 226, 242, 243, 270, 514
Lsp1109I	GCAGC	2 cut(s)	155, 310
MaeI	CTAG	2 cut(s)	110, 308
MaeII	ACGT	1 cut(s)	511
MaeIII	GTNAC	1 cut(s)	443
MboII	GAAGA	1 cut(s)	60
MhlI	GDGCHC	2 cut(s)	102, 247
MluCI	AATT	3 cut(s)	412, 448, 515
MnlI	CCTC	8 cut(s)	52, 76, 148, 190, 214, 262, 531, 550
Mph1103I	ATGCAT	1 cut(s)	140
MseI	TTAA	1 cut(s)	8
MslI	CAYNNNNRTG	3 cut(s)	137, 164, 441
MspA1I	CMGCKG	1 cut(s)	288
MspR9I	CCNGG	1 cut(s)	258
MvaI	CCWGG	1 cut(s)	258
MwoI	GCNNNNNNNGC	2 cut(s)	176, 502
NdeI	CATATG	2 cut(s)	21, 134
NlaIII	CATG	5 cut(s)	142, 163, 331, 496, 501
NlaIV	GGNNCC	3 cut(s)	87, 201, 246
NmeAIII	GCCGAG	1 cut(s)	420
NmuCI	GTSAC	1 cut(s)	443
NsiI	ATGCAT	1 cut(s)	140
NspV	TTCGAA	1 cut(s)	71
PagI	TCATGA	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	78
PflFI	GACNNNGTC	1 cut(s)	44
PkrI	GCNGC	2 cut(s)	145, 325
Ppu21I	YACGTR	1 cut(s)	512
Psp6I	CCWGG	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	256
PspN4I	GGNNCC	3 cut(s)	87, 201, 246
PsyI	GACNNNGTC	1 cut(s)	44
RseI	CAYNNNNRTG	3 cut(s)	137, 164, 441
SaqAI	TTAA	1 cut(s)	8
SatI	GCNGC	2 cut(s)	144, 324
ScrFI	CCNGG	1 cut(s)	258
SduI	GDGCHC	2 cut(s)	102, 247
SetI	ASST	6 cut(s)	148, 159, 201, 309, 514, 533
SfuI	TTCGAA	1 cut(s)	71
SmiMI	CAYNNNNRTG	3 cut(s)	137, 164, 441
SmlI	CTYRAG	1 cut(s)	358
SmoI	CTYRAG	1 cut(s)	358
Sse9I	AATT	3 cut(s)	412, 448, 515
SsiI	CCGC	2 cut(s)	288, 431
SspMI	CTAG	2 cut(s)	110, 308
StyD4I	CCNGG	1 cut(s)	256
TaaI	ACNGT	1 cut(s)	316
TaiI	ACGT	1 cut(s)	514
TaqI	TCGA	3 cut(s)	71, 81, 215
TasI	AATT	3 cut(s)	412, 448, 515
TfiI	GAWTC	1 cut(s)	78
Tru1I	TTAA	1 cut(s)	8
Tru9I	TTAA	1 cut(s)	8
TscAI	CASTG	2 cut(s)	43, 210
TseFI	GTSAC	1 cut(s)	443
TseI	GCWGC	2 cut(s)	143, 323
Tsp45I	GTSAC	1 cut(s)	443
TspDTI	ATGAA	3 cut(s)	357, 362, 402
TspGWI	ACGGA	1 cut(s)	288
TspRI	CASTG	2 cut(s)	43, 210
Tth111I	GACNNNGTC	1 cut(s)	44
XapI	RAATTY	1 cut(s)	515
XbaI	TCTAGA	1 cut(s)	109
XcmI	CCANNNNNNNNNTGG	1 cut(s)	334
XspI	CTAG	2 cut(s)	110, 308
Zsp2I	ATGCAT	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.