Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0014662

Physical Location & Seq

Genomic Coordinates Reverse (-)

19699969 .. 19702720

Gene Structure 2752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012536

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1521 bp

ATGTTCACTAATAACACTGACATTGTCAAGTTTTATGAGGCGTCGTCTTCGAATGGAATCGAGGAGCCAAAGGGAGTGCCCAAGTTTCTAGAAATGCAGGAGTGCTATAACATATGCATGGCAGCTTACAAAGAGGTCATGGCTATGGCTGTGAAAGCAAACACTTGGGTTGTCGAGGTTCCACTGCTCGGTTCAATTGAGGAACTCCAGCAGATGTTCAGGGCTCCACCCTCTCCTGGTATGGAGATTGAGTATTCCATTGAGAGCGGTGTTGTTCCGTTTAAGCTAGAGAACGTGGTTGCTGCCATGACAAATGTGGATGAATGGGCTTCAGCCTTGAGCAACATTGTTCATCACAGAACTGATGAAGTGCCGAGTGGTGTTATGAGTAATTTGGCGTGTAACACACCACCACATACCCGTGACAATTTCAAGGGTGTAAAAACGATAAATGCTGAACTTCTCTTGCCCATGCCATGTATGCCAACACGTAAATTCAGTTTCGTCAGGTTTTTGAGGCAAGTCATACCAGATGTATGGGCTGTTGTTGATGTATCGACTGACTATTTTCCGCACATTGACTCTACACTGAAAGTGAACTGTAAGAGAAGGCCTTCTGGGGTCATCATTAGGAGGCGTGATGATCATTCTGAGGTTATATGGATTGAGAATATGGAAGTACAGAAATGCAATGTCCAAGATAGTATATACTCTGCAGTAATCAATTCAAACCTGGCATTCGGAGCAAAGCGCTGGATTAGTACATTGTCAACCAAAGAAAAGCGGATCGAAAGTAGATTTGTCACTCTTAGACTGCCTAATAATTTTTCTCAAGCATTTTCAGTTCGTGTTGCTCTGCTGACATTGACTAGAAGGTTGAAGAAGGCGTATTTGAATTACATAACTGAGCATCCAGATGAAACTAAATGGGATTTACTATCAGACACAGGAGTTCAGATTTTGAAGGATACCGATGCAGAAGGAAAAGATAATTACATGGCAGTGACTACCTTCCGAGTTAAAGCAACTCCGAGCACAGTTTTTAACTTTCTTGTCAAAAGGACTCGGGAATTACAGTGGTCACATTTAGAAGAGATGGAAGAGCCTGAAGAAGTGATAATGTTAGTCACGGATGATGACAGCAACTGTATTACTTTACATGCAAAATCAGTTATGCAAACAGAGTCTGCAGAGAATTTTGAATATGTGTTACAAGAGGCTTCCAGGGATGAGTTTTGCTCTTTCATTATAGCATCACCTATCAGCCAGTCAGAAGTTAATAGTGCTTTAGGGTTTGGAAAATCATCTTGTGCCTTAAGACCTTTTGGTTTTTCCATAATACCTGATGGGTCTCGGGGACTCCTATCCGGTGCTTCCCTTGTAACTATGGCCTTCCAACGAGAGCTTGACGCTGATCTTCAAACTAGTGAAGTGATTGAAGGAATGAGCAATCATGTCAGCGGTATTGTTGGAGCGATAAATGAAGCATTTACAGTAGGGGAAGAAGCAACAGAGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

START

Protein Analysis

507

Amino Acids

56.78

Weight (kDa)

5.05

Isoelectric Point (pI)

52.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
START	PF01852	42 - 260	4.9e-16	START domain
PDF2_C	PF25797	283 - 497	6.9e-21	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014662)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g20620 FvH4_2g20620
malus_domestica	MD00G1060500.v1.1 MD00G1060600.v1.1
pyrus_communis	pycom10g15300
rosa_chinensis	RchiOBHm_Chr6g0286791
rosa_laevigata	RLG00000012536
rosa_multiflora	Rmu_co8407681.1_g000001 Rmu_sc0007546.1_g000021 Rmu_ssc0000279.1_g000001
rosa_roxburghii	Rroxscaffold_7G00181970
rosa_rugosa	Rorug06G0183000
rosa_samantha	Rh6AG295600 Rh6BG300000 Rh6CG307700 Rh6DG291600
rosa_wichuraiana	Rw6G025490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	267
AciI	CCGC	4 cut(s)	267, 572, 784, 1461
AclWI	GGATC	1 cut(s)	794
AcsI	RAATTY	2 cut(s)	494, 1195
AcuI	CTGAAG	2 cut(s)	315, 1128
AcyI	GRCGYC	1 cut(s)	41
AfaI	GTAC	2 cut(s)	681, 763
AfeI	AGCGCT	1 cut(s)	752
AfiI	CCNNNNNNNGG	2 cut(s)	188, 236
AflII	CTTAAG	1 cut(s)	1315
AflIII	ACRYGT	1 cut(s)	488
AgsI	TTSAA	9 cut(s)	195, 433, 729, 880, 895, 964, 1202, 1421, 1439
AhlI	ACTAGT	1 cut(s)	1424
AjnI	CCWGG	3 cut(s)	235, 732, 1223
AluBI	AGCT	4 cut(s)	125, 286, 1405, 1516
AluI	AGCT	4 cut(s)	125, 286, 1405, 1516
Alw21I	GWGCWC	1 cut(s)	1037
Alw26I	GTCTC	1 cut(s)	1356
AlwI	GGATC	1 cut(s)	794
AlwNI	CAGNNNCTG	2 cut(s)	1146, 1187
Ama87I	CYCGRG	2 cut(s)	1065, 1353
Aor51HI	AGCGCT	1 cut(s)	752
AoxI	GGCC	2 cut(s)	611, 1389
ApeKI	GCWGC	2 cut(s)	122, 302
ApoI	RAATTY	2 cut(s)	494, 1195
Asp700I	GAANNNNTTC	1 cut(s)	613
AspLEI	GCGC	1 cut(s)	753
AsuHPI	GGTGA	1 cut(s)	1248
AsuII	TTCGAA	1 cut(s)	50
AvaI	CYCGRG	2 cut(s)	1065, 1353
BaeGI	GKGCMC	1 cut(s)	81
BanII	GRGCYC	1 cut(s)	226
BbsI	GAAGAC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	1037
BbvI	GCAGC	2 cut(s)	134, 289
BccI	CCATC	2 cut(s)	1090, 1340
BciT130I	CCWGG	3 cut(s)	237, 734, 1225
BciVI	GTATCC	1 cut(s)	961
BclI	TGATCA	1 cut(s)	643
BcoDI	GTCTC	1 cut(s)	1356
BcuI	ACTAGT	1 cut(s)	1424
BfaI	CTAG	4 cut(s)	89, 287, 870, 1425
BfmI	CTRYAG	3 cut(s)	714, 1188, 1517
BfoI	RGCGCY	1 cut(s)	754
BfrI	CTTAAG	1 cut(s)	1315
BfuI	GTATCC	1 cut(s)	961
BisI	GCNGC	2 cut(s)	123, 303
BlsI	GCNGC	2 cut(s)	124, 304
Bme1390I	CCNGG	3 cut(s)	237, 734, 1225
BmeT110I	CYCGRG	2 cut(s)	1065, 1353
BmiI	GGNNCC	3 cut(s)	66, 180, 225
BmrFI	CCNGG	3 cut(s)	237, 734, 1225
BmsI	GCATC	3 cut(s)	919, 964, 1262
BpiI	GAAGAC	1 cut(s)	39
BplI	GAGNNNNNCTC	2 cut(s)	1223, 1255
BpmI	CTGGAG	1 cut(s)	191
Bpu14I	TTCGAA	1 cut(s)	50
BpuEI	CTTGAG	2 cut(s)	358, 816
BsaAI	YACGTR	1 cut(s)	491
BsaHI	GRCGYC	1 cut(s)	41
BsaI	GGTCTC	1 cut(s)	1356
BsaJI	CCNNGG	1 cut(s)	1224
BsaWI	WCCGGW	1 cut(s)	1367
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
Bsc4I	CCNNNNNNNGG	2 cut(s)	188, 236
Bse1I	ACTGG	1 cut(s)	1267
Bse3DI	GCAATG	1 cut(s)	697
BseBI	CCWGG	3 cut(s)	237, 734, 1225
BseDI	CCNNGG	1 cut(s)	1224
BseGI	GGATG	4 cut(s)	325, 910, 1138, 1234
BseLI	CCNNNNNNNGG	2 cut(s)	188, 236
BseMI	GCAATG	1 cut(s)	697
BseMII	CTCAG	2 cut(s)	642, 897
BseNI	ACTGG	1 cut(s)	1267
BseRI	GAGGAG	1 cut(s)	77
BseSI	GKGCMC	1 cut(s)	81
BseXI	GCAGC	2 cut(s)	134, 289
BshFI	GGCC	2 cut(s)	613, 1391
BsiHKAI	GWGCWC	1 cut(s)	1037
BsiHKCI	CYCGRG	2 cut(s)	1065, 1353
BsiSI	CCGG	1 cut(s)	1368
BslFI	GGGAC	1 cut(s)	1371
BslI	CCNNNNNNNGG	2 cut(s)	188, 236
BsmAI	GTCTC	1 cut(s)	1356
BsmFI	GGGAC	1 cut(s)	1371
BsmI	GAATGC	1 cut(s)	737
BsnI	GGCC	2 cut(s)	613, 1391
Bso31I	GGTCTC	1 cut(s)	1356
BsoBI	CYCGRG	2 cut(s)	1065, 1353
Bsp119I	TTCGAA	1 cut(s)	50
Bsp1286I	GDGCHC	3 cut(s)	81, 226, 1037
Bsp143I	GATC	3 cut(s)	643, 786, 1414
BspACI	CCGC	4 cut(s)	267, 572, 784, 1461
BspANI	GGCC	2 cut(s)	613, 1391
BspCNI	CTCAG	2 cut(s)	643, 898
BspLI	GGNNCC	3 cut(s)	66, 180, 225
BspMAI	CTGCAG	2 cut(s)	718, 1192
BspPI	GGATC	1 cut(s)	794
BspQI	GCTCTTC	1 cut(s)	1095
BspT104I	TTCGAA	1 cut(s)	50
BspTI	CTTAAG	1 cut(s)	1315
BspTNI	GGTCTC	1 cut(s)	1356
BsrBI	CCGCTC	1 cut(s)	267
BsrDI	GCAATG	1 cut(s)	697
BsrI	ACTGG	1 cut(s)	1267
BssECI	CCNNGG	1 cut(s)	1224
BssMI	GATC	3 cut(s)	643, 786, 1414
BssNI	GRCGYC	1 cut(s)	41
Bst2UI	CCWGG	3 cut(s)	237, 734, 1225
Bst4CI	ACNGT	5 cut(s)	602, 1039, 1077, 1148, 1495
Bst6I	CTCTTC	2 cut(s)	1086, 1095
BstACI	GRCGYC	1 cut(s)	41
BstAFI	CTTAAG	1 cut(s)	1315
BstBAI	YACGTR	1 cut(s)	491
BstBI	TTCGAA	1 cut(s)	50
BstDEI	CTNAG	3 cut(s)	651, 809, 906
BstF5I	GGATG	4 cut(s)	325, 910, 1138, 1234
BstH2I	RGCGCY	1 cut(s)	754
BstHHI	GCGC	1 cut(s)	753
BstKTI	GATC	3 cut(s)	646, 789, 1417
BstMAI	GTCTC	1 cut(s)	1356
BstMBI	GATC	3 cut(s)	643, 786, 1414
BstMWI	GCNNNNNNNGC	3 cut(s)	155, 481, 743
BstNI	CCWGG	3 cut(s)	237, 734, 1225
BstNSI	RCATGY	1 cut(s)	1163
BstSCI	CCNGG	3 cut(s)	235, 732, 1223
BstSFI	CTRYAG	3 cut(s)	714, 1188, 1517
BstSLI	GKGCMC	1 cut(s)	81
BstV1I	GCAGC	2 cut(s)	134, 289
BstV2I	GAAGAC	1 cut(s)	39
BstXI	CCANNNNNNTGG	1 cut(s)	537
BsuI	GTATCC	1 cut(s)	961
BsuRI	GGCC	2 cut(s)	613, 1391
BtsCI	GGATG	4 cut(s)	325, 910, 1138, 1234
BtsI	GCAGTG	2 cut(s)	182, 1008
BtsIMutI	CAGTG	5 cut(s)	15, 182, 587, 1008, 1082
CaiI	CAGNNNCTG	2 cut(s)	1146, 1187
CfoI	GCGC	1 cut(s)	753
CseI	GACGC	2 cut(s)	30, 1418
Csp6I	GTAC	2 cut(s)	680, 762
CviAII	CATG	8 cut(s)	118, 139, 307, 472, 477, 997, 1160, 1454
CviQI	GTAC	2 cut(s)	680, 762
DdeI	CTNAG	3 cut(s)	651, 809, 906
DpnI	GATC	3 cut(s)	645, 788, 1416
DpnII	GATC	3 cut(s)	643, 786, 1414
Eam1104I	CTCTTC	2 cut(s)	1086, 1095
EarI	CTCTTC	2 cut(s)	1086, 1095
Eco147I	AGGCCT	1 cut(s)	613
Eco24I	GRGCYC	1 cut(s)	226
Eco31I	GGTCTC	1 cut(s)	1356
Eco47III	AGCGCT	1 cut(s)	752
Eco57I	CTGAAG	2 cut(s)	315, 1128
Eco88I	CYCGRG	2 cut(s)	1065, 1353
EcoRII	CCWGG	3 cut(s)	235, 732, 1223
EcoT22I	ATGCAT	1 cut(s)	119
EcoT38I	GRGCYC	1 cut(s)	226
FaeI	CATG	8 cut(s)	121, 142, 310, 475, 480, 1000, 1163, 1457
FaqI	GGGAC	1 cut(s)	1371
FatI	CATG	8 cut(s)	117, 138, 306, 471, 476, 996, 1159, 1453
FauNDI	CATATG	1 cut(s)	113
FbaI	TGATCA	1 cut(s)	643
Fnu4HI	GCNGC	2 cut(s)	123, 303
FokI	GGATG	4 cut(s)	332, 897, 1145, 1241
FriOI	GRGCYC	1 cut(s)	226
Fsp4HI	GCNGC	2 cut(s)	123, 303
FspBI	CTAG	4 cut(s)	89, 287, 870, 1425
GlaI	GCGC	1 cut(s)	752
GluI	GCNGC	2 cut(s)	123, 303
GsuI	CTGGAG	1 cut(s)	191
HaeII	RGCGCY	1 cut(s)	754
HaeIII	GGCC	2 cut(s)	613, 1391
HapII	CCGG	1 cut(s)	1368
HgaI	GACGC	2 cut(s)	30, 1418
HhaI	GCGC	1 cut(s)	753
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	8 cut(s)	121, 142, 310, 475, 480, 1000, 1163, 1457
Hin6I	GCGC	1 cut(s)	751
HinP1I	GCGC	1 cut(s)	751
HincII	GTYRAC	1 cut(s)	771
HindII	GTYRAC	1 cut(s)	771
HinfI	GANTC	5 cut(s)	57, 581, 1063, 1184, 1359
HpaII	CCGG	1 cut(s)	1368
HphI	GGTGA	1 cut(s)	1248
Hpy166II	GTNNAC	3 cut(s)	6, 598, 771
Hpy188I	TCNGA	7 cut(s)	652, 743, 943, 957, 1016, 1032, 1273
Hpy188III	TCNNGA	3 cut(s)	89, 914, 1067
Hpy8I	GTNNAC	3 cut(s)	6, 598, 771
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	9 cut(s)	603, 624, 867, 877, 958, 974, 1021, 1402, 1433
HpyCH4III	ACNGT	5 cut(s)	602, 1039, 1077, 1148, 1495
HpyCH4IV	ACGT	2 cut(s)	294, 490
HpyCH4V	TGCA	8 cut(s)	97, 117, 690, 716, 977, 1163, 1177, 1190
HpyF10VI	GCNNNNNNNGC	3 cut(s)	155, 481, 743
HpyF3I	CTNAG	3 cut(s)	651, 809, 906
HpySE526I	ACGT	2 cut(s)	294, 490
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	8 cut(s)	121, 142, 310, 475, 480, 1000, 1163, 1457
HspAI	GCGC	1 cut(s)	751
Ksp22I	TGATCA	1 cut(s)	643
Kzo9I	GATC	3 cut(s)	643, 786, 1414
LguI	GCTCTTC	1 cut(s)	1095
LmnI	GCTCC	4 cut(s)	64, 229, 743, 1472
Lsp1109I	GCAGC	2 cut(s)	134, 289
LweI	GCATC	3 cut(s)	919, 964, 1262
MaeI	CTAG	4 cut(s)	89, 287, 870, 1425
MaeII	ACGT	2 cut(s)	294, 490
MaeIII	GTNAC	8 cut(s)	401, 422, 802, 1003, 1080, 1126, 1209, 1381
MalI	GATC	3 cut(s)	645, 788, 1416
MbiI	CCGCTC	1 cut(s)	267
MboI	GATC	3 cut(s)	643, 786, 1414
MboII	GAAGA	7 cut(s)	39, 892, 1103, 1112, 1121, 1409, 1514
MfeI	CAATTG	1 cut(s)	195
MhlI	GDGCHC	3 cut(s)	81, 226, 1037
MlyI	GAGTC	4 cut(s)	575, 1057, 1193, 1353
MmeI	TCCRAC	2 cut(s)	1420, 1450
Mph1103I	ATGCAT	1 cut(s)	119
MroXI	GAANNNNTTC	1 cut(s)	613
MseI	TTAA	5 cut(s)	282, 1020, 1044, 1278, 1316
MslI	CAYNNNNRTG	5 cut(s)	116, 143, 420, 915, 1001
MspA1I	CMGCKG	1 cut(s)	1461
MspCI	CTTAAG	1 cut(s)	1315
MspI	CCGG	1 cut(s)	1368
MspR9I	CCNGG	3 cut(s)	237, 734, 1225
MunI	CAATTG	1 cut(s)	195
Mva1269I	GAATGC	1 cut(s)	737
MvaI	CCWGG	3 cut(s)	237, 734, 1225
MwoI	GCNNNNNNNGC	3 cut(s)	155, 481, 743
NdeI	CATATG	1 cut(s)	113
NdeII	GATC	3 cut(s)	643, 786, 1414
NlaIII	CATG	8 cut(s)	121, 142, 310, 475, 480, 1000, 1163, 1457
NlaIV	GGNNCC	3 cut(s)	66, 180, 225
NmeAIII	GCCGAG	1 cut(s)	399
NmuCI	GTSAC	5 cut(s)	422, 802, 1003, 1080, 1126
NsiI	ATGCAT	1 cut(s)	119
NspI	RCATGY	1 cut(s)	1163
NspV	TTCGAA	1 cut(s)	50
PceI	AGGCCT	1 cut(s)	613
PciSI	GCTCTTC	1 cut(s)	1095
PctI	GAATGC	1 cut(s)	737
PdmI	GAANNNNTTC	1 cut(s)	613
PfeI	GAWTC	1 cut(s)	57
PflFI	GACNNNGTC	1 cut(s)	23
PkrI	GCNGC	2 cut(s)	124, 304
PleI	GAGTC	4 cut(s)	575, 1057, 1192, 1353
PpsI	GAGTC	4 cut(s)	575, 1057, 1192, 1353
Ppu21I	YACGTR	1 cut(s)	491
Psp6I	CCWGG	3 cut(s)	235, 732, 1223
PspGI	CCWGG	3 cut(s)	235, 732, 1223
PspN4I	GGNNCC	3 cut(s)	66, 180, 225
PstI	CTGCAG	2 cut(s)	718, 1192
PstNI	CAGNNNCTG	2 cut(s)	1146, 1187
PsyI	GACNNNGTC	1 cut(s)	23
RsaI	GTAC	2 cut(s)	681, 763
RsaNI	GTAC	2 cut(s)	680, 762
RseI	CAYNNNNRTG	5 cut(s)	116, 143, 420, 915, 1001
SapI	GCTCTTC	1 cut(s)	1095
SaqAI	TTAA	5 cut(s)	282, 1020, 1044, 1278, 1316
SatI	GCNGC	2 cut(s)	123, 303
Sau3AI	GATC	3 cut(s)	643, 786, 1414
SchI	GAGTC	4 cut(s)	575, 1057, 1193, 1353
ScrFI	CCNGG	3 cut(s)	237, 734, 1225
SduI	GDGCHC	3 cut(s)	81, 226, 1037
SfaNI	GCATC	3 cut(s)	919, 964, 1262
SfcI	CTRYAG	3 cut(s)	714, 1188, 1517
SfuI	TTCGAA	1 cut(s)	50
SmiMI	CAYNNNNRTG	5 cut(s)	116, 143, 420, 915, 1001
SmlI	CTYRAG	3 cut(s)	337, 831, 1315
SmoI	CTYRAG	3 cut(s)	337, 831, 1315
SpeI	ACTAGT	1 cut(s)	1424
SseBI	AGGCCT	1 cut(s)	613
SsiI	CCGC	4 cut(s)	267, 572, 784, 1461
SspMI	CTAG	4 cut(s)	89, 287, 870, 1425
StuI	AGGCCT	1 cut(s)	613
StyD4I	CCNGG	3 cut(s)	235, 732, 1223
TaaI	ACNGT	5 cut(s)	602, 1039, 1077, 1148, 1495
TaiI	ACGT	2 cut(s)	297, 493
TaqI	TCGA	5 cut(s)	50, 60, 174, 557, 789
TatI	WGTACW	2 cut(s)	679, 761
TfiI	GAWTC	1 cut(s)	57
Tru1I	TTAA	5 cut(s)	282, 1020, 1044, 1278, 1316
Tru9I	TTAA	5 cut(s)	282, 1020, 1044, 1278, 1316
TscAI	CASTG	5 cut(s)	22, 189, 594, 1008, 1082
TseFI	GTSAC	5 cut(s)	422, 802, 1003, 1080, 1126
TseI	GCWGC	2 cut(s)	122, 302
Tsp45I	GTSAC	5 cut(s)	422, 802, 1003, 1080, 1126
TspDTI	ATGAA	6 cut(s)	336, 341, 381, 933, 1234, 1497
TspGWI	ACGGA	2 cut(s)	267, 1145
TspRI	CASTG	5 cut(s)	22, 189, 594, 1008, 1082
Tth111I	GACNNNGTC	1 cut(s)	23
Vha464I	CTTAAG	1 cut(s)	1315
XapI	RAATTY	2 cut(s)	494, 1195
XbaI	TCTAGA	1 cut(s)	88
XceI	RCATGY	1 cut(s)	1163
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313
XmnI	GAANNNNTTC	1 cut(s)	613
XspI	CTAG	4 cut(s)	89, 287, 870, 1425
Zsp2I	ATGCAT	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.