Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0014662

Physical Location & Seq

Genomic Coordinates Forward (+)

52936768 .. 52940382

Gene Structure 3615 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG300000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGTTTGTTATGAGCTCTTTGATTCTTTCTTTAAATGTTGAGTATGTTGTTCTGTGTCGTTGTTTCCAGGATGAATGGGCTTCAGCCTTGAGCAACATTGTTCATCACAGAACTGATGAAGTGCCGAGTGGTGTTATGAGTAATTTGGCGTGTAATACACCGCCACATACCCGTGACAATTTCAAGGGTGTAAAAACGATAAATGCTGAACTTCTCTTGCCCATGCCATGTATGCCAACACGTAAATTCAGTTTTGTCAGGTTTTTGAGGCAAGTCATACCAGATGTATGGGCTGTTGTTGATGTATCGACCGACTATTTTCCGCACATTGACTCTACACTGAAAGTGAACTGTAAGAGAAGACCTTCTGGGGTCATCATTAGGAGGCGTGATGATCATTCTGAGGTTATATGGATTGAGAATATGGAAGTACAGAAATGCAATGTCAACCAAGATAGTATATACTCTGGAGTAATCAATTCAAACCTGGCATTCGGAGCAAAGCGCTGGATTAGTACATTGTCAACCAAAGAAAAGCGGATCGAAAGTAGATTTGTCACTCTTAGACTGCCTAATAATTTTTCTCAAGCATTTTCAGTTCGTGTTGCTCTGCTGACATTGACTAGAAGGTTGAAGAAGGCATATTTGAATTACATAACTGAGCATCCAGATGAAACTAAATGGGATTTACTATCAGACACAGGAGTTCAGATTTTGAAGGATACTGATGCAGAAGGAAAAGATAATTACATGGCAGTGACTACCTTCCGAGTCAAAGCAACTCCGAGCACAGTTTTTAACTTTCTTGTCAAAAGGACTCGGGAATTACAGTGGTCACATTTAGAAGAGATGGAAGAGCCTGAAGAAGTGATAACGTTAGTCACGGACGATAACAGCAACTGTATTACTTTACATGCAAAATCAGTTATGCAAACAGAGTCTGCAGAGAATTTTGAATATGTGTTACAAGAGGCTTCCAGGGATGAGTTTTGCTCTTTCATTATAGCATCACCTATCAGCCAGTCAGAAATTAATAGTGCTTTAGGGCTTGGAAAATCATCTTGTGCCTTAAGACCTTTTGGTTTTTCCATAATACCTGATGGGTCTCGGGGACTCCTATCCGGTGCCTCCCTTGTAACTATGGCCTTCCAACGAGAGCTTGACGCTGATCTTGAAACTAGTGAAGTGATTGAAGGAATGAGCAATCATGTCAGCGATATTGTTGGAGCGATAAATGAAGCATATTCTGCAGTTACAGTAGGGGAAGAAGCAACAGAGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

START

Protein Analysis

427

Amino Acids

48.06

Weight (kDa)

5.28

Isoelectric Point (pI)

48.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
START	PF01852	64 - 178	9.2e-13	START domain
PDF2_C	PF25797	201 - 414	2.3e-21	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014662)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g20620 FvH4_2g20620
malus_domestica	MD00G1060500.v1.1 MD00G1060600.v1.1
pyrus_communis	pycom10g15300
rosa_chinensis	RchiOBHm_Chr6g0286791
rosa_laevigata	RLG00000012536
rosa_multiflora	Rmu_co8407681.1_g000001 Rmu_sc0007546.1_g000021 Rmu_ssc0000279.1_g000001
rosa_roxburghii	Rroxscaffold_7G00181970
rosa_rugosa	Rorug06G0183000
rosa_samantha	Rh6AG295600 Rh6BG300000 Rh6CG307700 Rh6DG291600
rosa_wichuraiana	Rw6G025490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1124
AciI	CCGC	3 cut(s)	161, 323, 538
AclI	AACGTT	1 cut(s)	875
AclWI	GGATC	1 cut(s)	548
AcsI	RAATTY	2 cut(s)	245, 949
AcuI	CTGAAG	2 cut(s)	66, 882
AfaI	GTAC	2 cut(s)	432, 517
AfeI	AGCGCT	1 cut(s)	506
AflII	CTTAAG	1 cut(s)	1069
AflIII	ACRYGT	1 cut(s)	239
AgsI	TTSAA	8 cut(s)	184, 483, 634, 649, 718, 956, 1175, 1193
AhlI	ACTAGT	1 cut(s)	1178
AjnI	CCWGG	3 cut(s)	66, 486, 977
AluBI	AGCT	3 cut(s)	15, 1159, 1279
AluI	AGCT	3 cut(s)	15, 1159, 1279
Alw21I	GWGCWC	2 cut(s)	17, 791
Alw26I	GTCTC	1 cut(s)	1110
AlwI	GGATC	1 cut(s)	548
AlwNI	CAGNNNCTG	2 cut(s)	900, 941
Ama87I	CYCGRG	2 cut(s)	819, 1107
Aor51HI	AGCGCT	1 cut(s)	506
AoxI	GGCC	1 cut(s)	1143
ApoI	RAATTY	2 cut(s)	245, 949
AseI	ATTAAT	1 cut(s)	1032
Asp700I	GAANNNNTTC	1 cut(s)	364
AspLEI	GCGC	1 cut(s)	507
AsuHPI	GGTGA	1 cut(s)	1002
AvaI	CYCGRG	2 cut(s)	819, 1107
BanI	GGYRCC	1 cut(s)	1124
BanII	GRGCYC	1 cut(s)	17
BbsI	GAAGAC	1 cut(s)	367
Bbv12I	GWGCWC	2 cut(s)	17, 791
BccI	CCATC	2 cut(s)	844, 1094
BciT130I	CCWGG	3 cut(s)	68, 488, 979
BciVI	GTATCC	1 cut(s)	715
BclI	TGATCA	1 cut(s)	394
BcoDI	GTCTC	1 cut(s)	1110
BcuI	ACTAGT	1 cut(s)	1178
BfaI	CTAG	2 cut(s)	624, 1179
BfmI	CTRYAG	3 cut(s)	942, 1248, 1280
BfoI	RGCGCY	1 cut(s)	508
BfrI	CTTAAG	1 cut(s)	1069
BfuI	GTATCC	1 cut(s)	715
Bme1390I	CCNGG	3 cut(s)	68, 488, 979
BmeT110I	CYCGRG	2 cut(s)	819, 1107
BmiI	GGNNCC	1 cut(s)	1126
BmrFI	CCNGG	3 cut(s)	68, 488, 979
BmsI	GCATC	3 cut(s)	673, 718, 1016
BpiI	GAAGAC	1 cut(s)	367
BplI	GAGNNNNNCTC	2 cut(s)	977, 1009
BpmI	CTGGAG	1 cut(s)	489
BpuEI	CTTGAG	2 cut(s)	109, 570
BsaAI	YACGTR	1 cut(s)	242
BsaI	GGTCTC	1 cut(s)	1110
BsaJI	CCNNGG	1 cut(s)	978
BsaWI	WCCGGW	1 cut(s)	1121
Bse1I	ACTGG	1 cut(s)	1021
Bse3DI	GCAATG	1 cut(s)	448
BseBI	CCWGG	3 cut(s)	68, 488, 979
BseDI	CCNNGG	1 cut(s)	978
BseGI	GGATG	3 cut(s)	76, 664, 988
BseMI	GCAATG	1 cut(s)	448
BseMII	CTCAG	2 cut(s)	393, 651
BseNI	ACTGG	1 cut(s)	1021
Bsh1285I	CGRYCG	1 cut(s)	312
BshFI	GGCC	1 cut(s)	1145
BshNI	GGYRCC	1 cut(s)	1124
BsiEI	CGRYCG	1 cut(s)	312
BsiHKAI	GWGCWC	2 cut(s)	17, 791
BsiHKCI	CYCGRG	2 cut(s)	819, 1107
BsiSI	CCGG	1 cut(s)	1122
BslFI	GGGAC	1 cut(s)	1125
BsmAI	GTCTC	1 cut(s)	1110
BsmFI	GGGAC	1 cut(s)	1125
BsmI	GAATGC	1 cut(s)	491
BsnI	GGCC	1 cut(s)	1145
Bso31I	GGTCTC	1 cut(s)	1110
BsoBI	CYCGRG	2 cut(s)	819, 1107
Bsp1286I	GDGCHC	2 cut(s)	17, 791
Bsp143I	GATC	3 cut(s)	394, 540, 1168
BspACI	CCGC	3 cut(s)	161, 323, 538
BspANI	GGCC	1 cut(s)	1145
BspCNI	CTCAG	2 cut(s)	394, 652
BspLI	GGNNCC	1 cut(s)	1126
BspMAI	CTGCAG	2 cut(s)	946, 1252
BspPI	GGATC	1 cut(s)	548
BspQI	GCTCTTC	1 cut(s)	849
BspT107I	GGYRCC	1 cut(s)	1124
BspTI	CTTAAG	1 cut(s)	1069
BspTNI	GGTCTC	1 cut(s)	1110
BsrDI	GCAATG	1 cut(s)	448
BsrI	ACTGG	1 cut(s)	1021
BssECI	CCNNGG	1 cut(s)	978
BssMI	GATC	3 cut(s)	394, 540, 1168
Bst2UI	CCWGG	3 cut(s)	68, 488, 979
Bst4CI	ACNGT	5 cut(s)	353, 793, 831, 902, 1258
Bst6I	CTCTTC	2 cut(s)	840, 849
BstAFI	CTTAAG	1 cut(s)	1069
BstAPI	GCANNNNNTGC	1 cut(s)	1247
BstBAI	YACGTR	1 cut(s)	242
BstDEI	CTNAG	3 cut(s)	402, 563, 660
BstF5I	GGATG	3 cut(s)	76, 664, 988
BstH2I	RGCGCY	1 cut(s)	508
BstHHI	GCGC	1 cut(s)	507
BstKTI	GATC	3 cut(s)	397, 543, 1171
BstMAI	GTCTC	1 cut(s)	1110
BstMBI	GATC	3 cut(s)	394, 540, 1168
BstMCI	CGRYCG	1 cut(s)	312
BstMWI	GCNNNNNNNGC	3 cut(s)	232, 497, 1247
BstNI	CCWGG	3 cut(s)	68, 488, 979
BstNSI	RCATGY	1 cut(s)	917
BstSCI	CCNGG	3 cut(s)	66, 486, 977
BstSFI	CTRYAG	3 cut(s)	942, 1248, 1280
BstV2I	GAAGAC	1 cut(s)	367
BstXI	CCANNNNNNTGG	1 cut(s)	288
BsuI	GTATCC	1 cut(s)	715
BsuRI	GGCC	1 cut(s)	1145
BtsCI	GGATG	3 cut(s)	76, 664, 988
BtsI	GCAGTG	1 cut(s)	762
BtsIMutI	CAGTG	3 cut(s)	338, 762, 836
CaiI	CAGNNNCTG	2 cut(s)	900, 941
CfoI	GCGC	1 cut(s)	507
CseI	GACGC	1 cut(s)	1172
Csp6I	GTAC	2 cut(s)	431, 516
CviAII	CATG	5 cut(s)	223, 228, 751, 914, 1208
CviQI	GTAC	2 cut(s)	431, 516
DdeI	CTNAG	3 cut(s)	402, 563, 660
DpnI	GATC	3 cut(s)	396, 542, 1170
DpnII	GATC	3 cut(s)	394, 540, 1168
DraI	TTTAAA	1 cut(s)	33
Eam1104I	CTCTTC	2 cut(s)	840, 849
EarI	CTCTTC	2 cut(s)	840, 849
Ecl136II	GAGCTC	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	17
Eco31I	GGTCTC	1 cut(s)	1110
Eco47III	AGCGCT	1 cut(s)	506
Eco53kI	GAGCTC	1 cut(s)	15
Eco57I	CTGAAG	2 cut(s)	66, 882
Eco88I	CYCGRG	2 cut(s)	819, 1107
EcoICRI	GAGCTC	1 cut(s)	15
EcoRII	CCWGG	3 cut(s)	66, 486, 977
EcoT38I	GRGCYC	1 cut(s)	17
FaeI	CATG	5 cut(s)	226, 231, 754, 917, 1211
FaqI	GGGAC	1 cut(s)	1125
FatI	CATG	5 cut(s)	222, 227, 750, 913, 1207
FbaI	TGATCA	1 cut(s)	394
FokI	GGATG	3 cut(s)	83, 651, 995
FriOI	GRGCYC	1 cut(s)	17
FspBI	CTAG	2 cut(s)	624, 1179
GlaI	GCGC	1 cut(s)	506
GsuI	CTGGAG	1 cut(s)	489
HaeII	RGCGCY	1 cut(s)	508
HaeIII	GGCC	1 cut(s)	1145
HapII	CCGG	1 cut(s)	1122
HgaI	GACGC	1 cut(s)	1172
HhaI	GCGC	1 cut(s)	507
Hin1II	CATG	5 cut(s)	226, 231, 754, 917, 1211
Hin6I	GCGC	1 cut(s)	505
HinP1I	GCGC	1 cut(s)	505
HincII	GTYRAC	2 cut(s)	448, 525
HindII	GTYRAC	2 cut(s)	448, 525
HinfI	GANTC	6 cut(s)	22, 332, 771, 817, 938, 1113
HpaII	CCGG	1 cut(s)	1122
HphI	GGTGA	1 cut(s)	1002
Hpy166II	GTNNAC	3 cut(s)	349, 448, 525
Hpy188I	TCNGA	7 cut(s)	403, 497, 697, 711, 770, 786, 1027
Hpy188III	TCNNGA	4 cut(s)	468, 668, 821, 1172
Hpy8I	GTNNAC	3 cut(s)	349, 448, 525
HpyAV	CCTTC	8 cut(s)	375, 621, 631, 712, 728, 775, 1156, 1187
HpyCH4III	ACNGT	5 cut(s)	353, 793, 831, 902, 1258
HpyCH4IV	ACGT	2 cut(s)	241, 875
HpyCH4V	TGCA	6 cut(s)	441, 731, 917, 931, 944, 1250
HpyF10VI	GCNNNNNNNGC	3 cut(s)	232, 497, 1247
HpyF3I	CTNAG	3 cut(s)	402, 563, 660
HpySE526I	ACGT	2 cut(s)	241, 875
Hsp92II	CATG	5 cut(s)	226, 231, 754, 917, 1211
HspAI	GCGC	1 cut(s)	505
Ksp22I	TGATCA	1 cut(s)	394
Kzo9I	GATC	3 cut(s)	394, 540, 1168
LguI	GCTCTTC	1 cut(s)	849
LmnI	GCTCC	2 cut(s)	497, 1226
LweI	GCATC	3 cut(s)	673, 718, 1016
MaeI	CTAG	2 cut(s)	624, 1179
MaeII	ACGT	2 cut(s)	241, 875
MaeIII	GTNAC	8 cut(s)	173, 556, 757, 834, 880, 963, 1135, 1252
MalI	GATC	3 cut(s)	396, 542, 1170
MboI	GATC	3 cut(s)	394, 540, 1168
MboII	GAAGA	6 cut(s)	372, 646, 857, 866, 875, 1277
MhlI	GDGCHC	2 cut(s)	17, 791
MlyI	GAGTC	5 cut(s)	326, 780, 811, 947, 1107
MmeI	TCCRAC	2 cut(s)	1174, 1204
MnlI	CCTC	5 cut(s)	261, 378, 397, 964, 1138
MroXI	GAANNNNTTC	1 cut(s)	364
MseI	TTAA	4 cut(s)	32, 798, 1032, 1070
MslI	CAYNNNNRTG	3 cut(s)	171, 669, 755
MspCI	CTTAAG	1 cut(s)	1069
MspI	CCGG	1 cut(s)	1122
MspR9I	CCNGG	3 cut(s)	68, 488, 979
Mva1269I	GAATGC	1 cut(s)	491
MvaI	CCWGG	3 cut(s)	68, 488, 979
MwoI	GCNNNNNNNGC	3 cut(s)	232, 497, 1247
NdeII	GATC	3 cut(s)	394, 540, 1168
NlaIII	CATG	5 cut(s)	226, 231, 754, 917, 1211
NlaIV	GGNNCC	1 cut(s)	1126
NmeAIII	GCCGAG	1 cut(s)	150
NmuCI	GTSAC	5 cut(s)	173, 556, 757, 834, 880
NspI	RCATGY	1 cut(s)	917
PciSI	GCTCTTC	1 cut(s)	849
PctI	GAATGC	1 cut(s)	491
PdmI	GAANNNNTTC	1 cut(s)	364
PfeI	GAWTC	1 cut(s)	22
PfoI	TCCNGGA	1 cut(s)	66
PleI	GAGTC	5 cut(s)	326, 779, 811, 946, 1107
PpsI	GAGTC	5 cut(s)	326, 779, 811, 946, 1107
Ppu21I	YACGTR	1 cut(s)	242
PshBI	ATTAAT	1 cut(s)	1032
Psp124BI	GAGCTC	1 cut(s)	17
Psp1406I	AACGTT	1 cut(s)	875
Psp6I	CCWGG	3 cut(s)	66, 486, 977
PspGI	CCWGG	3 cut(s)	66, 486, 977
PspN4I	GGNNCC	1 cut(s)	1126
PstI	CTGCAG	2 cut(s)	946, 1252
PstNI	CAGNNNCTG	2 cut(s)	900, 941
RsaI	GTAC	2 cut(s)	432, 517
RsaNI	GTAC	2 cut(s)	431, 516
RseI	CAYNNNNRTG	3 cut(s)	171, 669, 755
SacI	GAGCTC	1 cut(s)	17
SapI	GCTCTTC	1 cut(s)	849
SaqAI	TTAA	4 cut(s)	32, 798, 1032, 1070
Sau3AI	GATC	3 cut(s)	394, 540, 1168
SchI	GAGTC	5 cut(s)	326, 780, 811, 947, 1107
ScrFI	CCNGG	3 cut(s)	68, 488, 979
SduI	GDGCHC	2 cut(s)	17, 791
SfaNI	GCATC	3 cut(s)	673, 718, 1016
SfcI	CTRYAG	3 cut(s)	942, 1248, 1280
SmiMI	CAYNNNNRTG	3 cut(s)	171, 669, 755
SmlI	CTYRAG	3 cut(s)	88, 585, 1069
SmoI	CTYRAG	3 cut(s)	88, 585, 1069
SpeI	ACTAGT	1 cut(s)	1178
SsiI	CCGC	3 cut(s)	161, 323, 538
SspMI	CTAG	2 cut(s)	624, 1179
SstI	GAGCTC	1 cut(s)	17
StyD4I	CCNGG	3 cut(s)	66, 486, 977
TaaI	ACNGT	5 cut(s)	353, 793, 831, 902, 1258
TaiI	ACGT	2 cut(s)	244, 878
TaqI	TCGA	2 cut(s)	308, 543
TaqII	GACCGA	1 cut(s)	326
TatI	WGTACW	2 cut(s)	430, 515
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	4 cut(s)	32, 798, 1032, 1070
Tru9I	TTAA	4 cut(s)	32, 798, 1032, 1070
TscAI	CASTG	3 cut(s)	345, 762, 836
TseFI	GTSAC	5 cut(s)	173, 556, 757, 834, 880
Tsp45I	GTSAC	5 cut(s)	173, 556, 757, 834, 880
TspDTI	ATGAA	6 cut(s)	87, 92, 132, 687, 988, 1251
TspGWI	ACGGA	1 cut(s)	899
TspRI	CASTG	3 cut(s)	345, 762, 836
Vha464I	CTTAAG	1 cut(s)	1069
VspI	ATTAAT	1 cut(s)	1032
XapI	RAATTY	2 cut(s)	245, 949
XceI	RCATGY	1 cut(s)	917
XmnI	GAANNNNTTC	1 cut(s)	364
XspI	CTAG	2 cut(s)	624, 1179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.