Rmu_sc0007546.1_g000021

homeobox-leucine zipper protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007546.1
Physical Location & Seq
Forward (+)
106440 .. 109126
2687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007546.1_g000021.1.cds

Sequence Viewer

Length: 1533 bp
atggggttaatgggtttccatatgttcactaataacactgacattgtcaagttttatgaggcgtcgtcttcgaatggaatcgaggagccaaagggagtgcccaagtttctagaaatgcaggagtgctataacatatgcatggcagcttacaaagaggtcatgactatggctgtgaaagcaaacacttgggttgtggaggttccactgctcggttcgattgaggaactccagcagatgttcagggctccaccctctcctgggatggagattgagtattccattgacagcggtgttgttccgttcaagctagagactgtggttgctgccatgacaaatgtggatgaatgggcttcagccttgagcaacattgttcatcacagaactgatgaagtgccgagtggtgttatgagtaatttggcgtgtaatacaccgccacatacccgtgacaatttcaagggtgtaaaaacgataaatgctgaacttctcttgcccatgccatgtatgccaacacgtaaattcagttttgtcaggtttttgaggcaagtcataccagatgtatgggctgttgttgatgtatcgaccgactattttccgcacattgactctacactgaaagtgaactgtaagagaaggccttctggggtcatcattaggaggcgtgatgatcattctgaggttatatggattgagaatatggaaatacagaaatgcaatgtccaagatagtatatactctggagtaatcaattcaaacctggcattcagagcaaagcgctggattagtacattgtcaaccaaagaaaagcggatcgaaagtagatttgtcactcttagattgcctaataatttttctcaagcattttcagttcgtgttgctctgctgacattgactagaaggttgaagaaggcatatttgaattacataactgagcatccagatgaaactaaatgggatttactatcagacacaggagttcagattttgaaggatactgatgcagaaggaaaagataattacatggcagtgactaccttccgagtcaaagcaactccgagcacagtttttaactttcttgtcaaaaggactcgggaattacagtggtcacatttagaagagatggaagagcctgaagaagtgataacgttagtcacggacgatgacagcaactgtattactttacatgcaaaatcagttatgcaaacagagtctgcagagaattttgaatatgtgttacaagaagcttccagggatgagttttgctctttcattatagcatcacctatcagccagtcagaagttaatagtgctttagggcttggaaaatcatcttgtgccttaagaccttttggtttttccataatacctgatgggtctcggggactcctatccggtgcctcccttgtaactatggccttccaacgagagcttgatgctgatcttgaaactagtgaagtgattgaaggaatgagcaatcatgtcagcgatattgttggagcgataaatgaagcatatcttgctcttgtgaacttctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

510

Amino Acids

57.4

Weight (kDa)

5.17

Isoelectric Point (pI)

50.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1391
AciI CCGC 4 cut(s) 288, 431, 593, 805
AclI AACGTT 1 cut(s) 1142
AclWI GGATC 1 cut(s) 815
AcsI RAATTY 2 cut(s) 515, 1216
AcuI CTGAAG 2 cut(s) 336, 1149
AcyI GRCGYC 1 cut(s) 62
AfaI GTAC 1 cut(s) 784
AfeI AGCGCT 1 cut(s) 773
AfiI CCNNNNNNNGG 3 cut(s) 209, 257, 258
AflII CTTAAG 1 cut(s) 1336
AflIII ACRYGT 1 cut(s) 509
AgsI TTSAA 9 cut(s) 304, 454, 750, 901, 916, 985, 1223, 1442, 1460
AhlI ACTAGT 1 cut(s) 1445
AjnI CCWGG 3 cut(s) 256, 753, 1244
AluBI AGCT 4 cut(s) 146, 307, 1241, 1426
AluI AGCT 4 cut(s) 146, 307, 1241, 1426
Alw21I GWGCWC 1 cut(s) 1058
Alw26I GTCTC 2 cut(s) 305, 1377
AlwI GGATC 1 cut(s) 815
AlwNI CAGNNNCTG 2 cut(s) 1167, 1208
Ama87I CYCGRG 2 cut(s) 1086, 1374
Aor51HI AGCGCT 1 cut(s) 773
AoxI GGCC 2 cut(s) 632, 1410
ApeKI GCWGC 2 cut(s) 143, 323
ApoI RAATTY 2 cut(s) 515, 1216
Asp700I GAANNNNTTC 1 cut(s) 634
AspLEI GCGC 1 cut(s) 774
AsuHPI GGTGA 1 cut(s) 1269
AsuII TTCGAA 1 cut(s) 71
AvaI CYCGRG 2 cut(s) 1086, 1374
BaeGI GKGCMC 1 cut(s) 102
BanI GGYRCC 1 cut(s) 1391
BanII GRGCYC 1 cut(s) 247
BbsI GAAGAC 1 cut(s) 60
Bbv12I GWGCWC 1 cut(s) 1058
BbvI GCAGC 2 cut(s) 155, 310
BccI CCATC 3 cut(s) 256, 1111, 1361
BciT130I CCWGG 3 cut(s) 258, 755, 1246
BciVI GTATCC 1 cut(s) 982
BclI TGATCA 1 cut(s) 664
BcoDI GTCTC 2 cut(s) 305, 1377
BcuI ACTAGT 1 cut(s) 1445
BfaI CTAG 5 cut(s) 110, 308, 891, 1446, 1531
BfmI CTRYAG 1 cut(s) 1209
BfoI RGCGCY 1 cut(s) 775
BfrI CTTAAG 1 cut(s) 1336
BfuI GTATCC 1 cut(s) 982
BisI GCNGC 2 cut(s) 144, 324
BlsI GCNGC 2 cut(s) 145, 325
Bme1390I CCNGG 3 cut(s) 258, 755, 1246
BmeT110I CYCGRG 2 cut(s) 1086, 1374
BmiI GGNNCC 4 cut(s) 87, 201, 246, 1393
BmrFI CCNGG 3 cut(s) 258, 755, 1246
BmsI GCATC 4 cut(s) 940, 985, 1283, 1420
BpiI GAAGAC 1 cut(s) 60
BplI GAGNNNNNCTC 2 cut(s) 1244, 1276
BpmI CTGGAG 2 cut(s) 212, 756
Bpu14I TTCGAA 1 cut(s) 71
BpuEI CTTGAG 2 cut(s) 379, 837
BsaAI YACGTR 1 cut(s) 512
BsaBI GATNNNNATC 1 cut(s) 1434
BsaHI GRCGYC 1 cut(s) 62
BsaI GGTCTC 1 cut(s) 1377
BsaJI CCNNGG 2 cut(s) 257, 1245
BsaWI WCCGGW 1 cut(s) 1388
BsaXI ACNNNNNCTCC 2 cut(s) 257, 287
Bsc4I CCNNNNNNNGG 3 cut(s) 209, 257, 258
Bse1I ACTGG 1 cut(s) 1288
Bse3DI GCAATG 1 cut(s) 718
Bse8I GATNNNNATC 1 cut(s) 1434
BseBI CCWGG 3 cut(s) 258, 755, 1246
BseDI CCNNGG 2 cut(s) 257, 1245
BseGI GGATG 4 cut(s) 267, 346, 931, 1255
BseJI GATNNNNATC 1 cut(s) 1434
BseLI CCNNNNNNNGG 3 cut(s) 209, 257, 258
BseMI GCAATG 1 cut(s) 718
BseMII CTCAG 2 cut(s) 663, 918
BseNI ACTGG 1 cut(s) 1288
BseRI GAGGAG 1 cut(s) 98
BseSI GKGCMC 1 cut(s) 102
BseXI GCAGC 2 cut(s) 155, 310
Bsh1285I CGRYCG 1 cut(s) 582
BshFI GGCC 2 cut(s) 634, 1412
BshNI GGYRCC 1 cut(s) 1391
BsiEI CGRYCG 1 cut(s) 582
BsiHKAI GWGCWC 1 cut(s) 1058
BsiHKCI CYCGRG 2 cut(s) 1086, 1374
BsiSI CCGG 1 cut(s) 1389
BslFI GGGAC 1 cut(s) 1392
BslI CCNNNNNNNGG 3 cut(s) 209, 257, 258
BsmAI GTCTC 2 cut(s) 305, 1377
BsmFI GGGAC 1 cut(s) 1392
BsmI GAATGC 1 cut(s) 758
BsnI GGCC 2 cut(s) 634, 1412
Bso31I GGTCTC 1 cut(s) 1377
BsoBI CYCGRG 2 cut(s) 1086, 1374
Bsp119I TTCGAA 1 cut(s) 71
Bsp1286I GDGCHC 3 cut(s) 102, 247, 1058
Bsp143I GATC 3 cut(s) 664, 807, 1435
BspACI CCGC 4 cut(s) 288, 431, 593, 805
BspANI GGCC 2 cut(s) 634, 1412
BspCNI CTCAG 2 cut(s) 664, 919
BspHI TCATGA 1 cut(s) 159
BspLI GGNNCC 4 cut(s) 87, 201, 246, 1393
BspMAI CTGCAG 1 cut(s) 1213
BspPI GGATC 1 cut(s) 815
BspQI GCTCTTC 1 cut(s) 1116
BspT104I TTCGAA 1 cut(s) 71
BspT107I GGYRCC 1 cut(s) 1391
BspTI CTTAAG 1 cut(s) 1336
BspTNI GGTCTC 1 cut(s) 1377
BsrDI GCAATG 1 cut(s) 718
BsrI ACTGG 1 cut(s) 1288
BssECI CCNNGG 2 cut(s) 257, 1245
BssMI GATC 3 cut(s) 664, 807, 1435
BssNI GRCGYC 1 cut(s) 62
Bst2UI CCWGG 3 cut(s) 258, 755, 1246
Bst4CI ACNGT 5 cut(s) 316, 623, 1060, 1098, 1169
Bst6I CTCTTC 2 cut(s) 1107, 1116
BstACI GRCGYC 1 cut(s) 62
BstAFI CTTAAG 1 cut(s) 1336
BstAPI GCANNNNNTGC 1 cut(s) 1514
BstBAI YACGTR 1 cut(s) 512
BstBI TTCGAA 1 cut(s) 71
BstDEI CTNAG 3 cut(s) 672, 830, 927
BstF5I GGATG 4 cut(s) 267, 346, 931, 1255
BstH2I RGCGCY 1 cut(s) 775
BstHHI GCGC 1 cut(s) 774
BstKTI GATC 3 cut(s) 667, 810, 1438
BstMAI GTCTC 2 cut(s) 305, 1377
BstMBI GATC 3 cut(s) 664, 807, 1435
BstMCI CGRYCG 1 cut(s) 582
BstMWI GCNNNNNNNGC 4 cut(s) 176, 502, 764, 1514
BstNI CCWGG 3 cut(s) 258, 755, 1246
BstNSI RCATGY 1 cut(s) 1184
BstSCI CCNGG 3 cut(s) 256, 753, 1244
BstSFI CTRYAG 1 cut(s) 1209
BstSLI GKGCMC 1 cut(s) 102
BstV1I GCAGC 2 cut(s) 155, 310
BstV2I GAAGAC 1 cut(s) 60
BstXI CCANNNNNNTGG 1 cut(s) 558
BsuI GTATCC 1 cut(s) 982
BsuRI GGCC 2 cut(s) 634, 1412
BtsCI GGATG 4 cut(s) 267, 346, 931, 1255
BtsI GCAGTG 2 cut(s) 203, 1029
BtsIMutI CAGTG 5 cut(s) 36, 203, 608, 1029, 1103
CaiI CAGNNNCTG 2 cut(s) 1167, 1208
CciI TCATGA 1 cut(s) 159
CfoI GCGC 1 cut(s) 774
CseI GACGC 1 cut(s) 51
Csp6I GTAC 1 cut(s) 783
CviAII CATG 8 cut(s) 139, 160, 328, 493, 498, 1018, 1181, 1475
CviQI GTAC 1 cut(s) 783
DdeI CTNAG 3 cut(s) 672, 830, 927
DpnI GATC 3 cut(s) 666, 809, 1437
DpnII GATC 3 cut(s) 664, 807, 1435
Eam1104I CTCTTC 2 cut(s) 1107, 1116
EarI CTCTTC 2 cut(s) 1107, 1116
Eco147I AGGCCT 1 cut(s) 634
Eco24I GRGCYC 1 cut(s) 247
Eco31I GGTCTC 1 cut(s) 1377
Eco47III AGCGCT 1 cut(s) 773
Eco57I CTGAAG 2 cut(s) 336, 1149
Eco88I CYCGRG 2 cut(s) 1086, 1374
EcoRII CCWGG 3 cut(s) 256, 753, 1244
EcoT22I ATGCAT 1 cut(s) 140
EcoT38I GRGCYC 1 cut(s) 247
FaeI CATG 8 cut(s) 142, 163, 331, 496, 501, 1021, 1184, 1478
FalI AAGNNNNNCTT 2 cut(s) 1497, 1529
FaqI GGGAC 1 cut(s) 1392
FatI CATG 8 cut(s) 138, 159, 327, 492, 497, 1017, 1180, 1474
FauNDI CATATG 2 cut(s) 21, 134
FbaI TGATCA 1 cut(s) 664
Fnu4HI GCNGC 2 cut(s) 144, 324
FokI GGATG 4 cut(s) 274, 353, 918, 1262
FriOI GRGCYC 1 cut(s) 247
Fsp4HI GCNGC 2 cut(s) 144, 324
FspBI CTAG 5 cut(s) 110, 308, 891, 1446, 1531
GlaI GCGC 1 cut(s) 773
GluI GCNGC 2 cut(s) 144, 324
GsuI CTGGAG 2 cut(s) 212, 756
HaeII RGCGCY 1 cut(s) 775
HaeIII GGCC 2 cut(s) 634, 1412
HapII CCGG 1 cut(s) 1389
HgaI GACGC 1 cut(s) 51
HhaI GCGC 1 cut(s) 774
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 8 cut(s) 142, 163, 331, 496, 501, 1021, 1184, 1478
Hin6I GCGC 1 cut(s) 772
HinP1I GCGC 1 cut(s) 772
HincII GTYRAC 1 cut(s) 792
HindII GTYRAC 1 cut(s) 792
HindIII AAGCTT 1 cut(s) 1239
HinfI GANTC 6 cut(s) 78, 602, 1038, 1084, 1205, 1380
HpaII CCGG 1 cut(s) 1389
HphI GGTGA 1 cut(s) 1269
Hpy166II GTNNAC 4 cut(s) 27, 619, 792, 1525
Hpy188I TCNGA 7 cut(s) 673, 764, 964, 978, 1037, 1053, 1294
Hpy188III TCNNGA 6 cut(s) 110, 160, 735, 935, 1088, 1439
Hpy8I GTNNAC 4 cut(s) 27, 619, 792, 1525
Hpy99I CGWCG 1 cut(s) 67
HpyAV CCTTC 9 cut(s) 624, 645, 888, 898, 979, 995, 1042, 1423, 1454
HpyCH4III ACNGT 5 cut(s) 316, 623, 1060, 1098, 1169
HpyCH4IV ACGT 2 cut(s) 511, 1142
HpyCH4V TGCA 7 cut(s) 118, 138, 711, 998, 1184, 1198, 1211
HpyF10VI GCNNNNNNNGC 4 cut(s) 176, 502, 764, 1514
HpyF3I CTNAG 3 cut(s) 672, 830, 927
HpySE526I ACGT 2 cut(s) 511, 1142
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 8 cut(s) 142, 163, 331, 496, 501, 1021, 1184, 1478
HspAI GCGC 1 cut(s) 772
Ksp22I TGATCA 1 cut(s) 664
Kzo9I GATC 3 cut(s) 664, 807, 1435
LguI GCTCTTC 1 cut(s) 1116
LmnI GCTCC 3 cut(s) 85, 250, 1493
Lsp1109I GCAGC 2 cut(s) 155, 310
LweI GCATC 4 cut(s) 940, 985, 1283, 1420
MaeI CTAG 5 cut(s) 110, 308, 891, 1446, 1531
MaeII ACGT 2 cut(s) 511, 1142
MaeIII GTNAC 7 cut(s) 443, 823, 1024, 1101, 1147, 1230, 1402
MalI GATC 3 cut(s) 666, 809, 1437
MboI GATC 3 cut(s) 664, 807, 1435
MboII GAAGA 5 cut(s) 60, 913, 1124, 1133, 1142
MhlI GDGCHC 3 cut(s) 102, 247, 1058
MluCI AATT 9 cut(s) 412, 448, 515, 745, 844, 916, 1012, 1091, 1216
MlyI GAGTC 5 cut(s) 596, 1047, 1078, 1214, 1374
MmeI TCCRAC 2 cut(s) 1441, 1471
Mph1103I ATGCAT 1 cut(s) 140
MroXI GAANNNNTTC 1 cut(s) 634
MseI TTAA 4 cut(s) 8, 1065, 1299, 1337
MslI CAYNNNNRTG 5 cut(s) 137, 164, 441, 936, 1022
MspA1I CMGCKG 1 cut(s) 288
MspCI CTTAAG 1 cut(s) 1336
MspI CCGG 1 cut(s) 1389
MspR9I CCNGG 3 cut(s) 258, 755, 1246
Mva1269I GAATGC 1 cut(s) 758
MvaI CCWGG 3 cut(s) 258, 755, 1246
MwoI GCNNNNNNNGC 4 cut(s) 176, 502, 764, 1514
NdeI CATATG 2 cut(s) 21, 134
NdeII GATC 3 cut(s) 664, 807, 1435
NlaIII CATG 8 cut(s) 142, 163, 331, 496, 501, 1021, 1184, 1478
NlaIV GGNNCC 4 cut(s) 87, 201, 246, 1393
NmeAIII GCCGAG 1 cut(s) 420
NmuCI GTSAC 5 cut(s) 443, 823, 1024, 1101, 1147
NsiI ATGCAT 1 cut(s) 140
NspI RCATGY 1 cut(s) 1184
NspV TTCGAA 1 cut(s) 71
PagI TCATGA 1 cut(s) 159
PceI AGGCCT 1 cut(s) 634
PciSI GCTCTTC 1 cut(s) 1116
PctI GAATGC 1 cut(s) 758
PdmI GAANNNNTTC 1 cut(s) 634
PfeI GAWTC 1 cut(s) 78
PflFI GACNNNGTC 1 cut(s) 44
PkrI GCNGC 2 cut(s) 145, 325
PleI GAGTC 5 cut(s) 596, 1046, 1078, 1213, 1374
PpsI GAGTC 5 cut(s) 596, 1046, 1078, 1213, 1374
Ppu21I YACGTR 1 cut(s) 512
Psp1406I AACGTT 1 cut(s) 1142
Psp6I CCWGG 3 cut(s) 256, 753, 1244
PspGI CCWGG 3 cut(s) 256, 753, 1244
PspN4I GGNNCC 4 cut(s) 87, 201, 246, 1393
PstI CTGCAG 1 cut(s) 1213
PstNI CAGNNNCTG 2 cut(s) 1167, 1208
PsyI GACNNNGTC 1 cut(s) 44
RsaI GTAC 1 cut(s) 784
RsaNI GTAC 1 cut(s) 783
RseI CAYNNNNRTG 5 cut(s) 137, 164, 441, 936, 1022
SapI GCTCTTC 1 cut(s) 1116
SaqAI TTAA 4 cut(s) 8, 1065, 1299, 1337
SatI GCNGC 2 cut(s) 144, 324
Sau3AI GATC 3 cut(s) 664, 807, 1435
SchI GAGTC 5 cut(s) 596, 1047, 1078, 1214, 1374
ScrFI CCNGG 3 cut(s) 258, 755, 1246
SduI GDGCHC 3 cut(s) 102, 247, 1058
SfaNI GCATC 4 cut(s) 940, 985, 1283, 1420
SfcI CTRYAG 1 cut(s) 1209
SfuI TTCGAA 1 cut(s) 71
SmiMI CAYNNNNRTG 5 cut(s) 137, 164, 441, 936, 1022
SmlI CTYRAG 3 cut(s) 358, 852, 1336
SmoI CTYRAG 3 cut(s) 358, 852, 1336
SpeI ACTAGT 1 cut(s) 1445
Sse9I AATT 9 cut(s) 412, 448, 515, 745, 844, 916, 1012, 1091, 1216
SseBI AGGCCT 1 cut(s) 634
SsiI CCGC 4 cut(s) 288, 431, 593, 805
SspMI CTAG 5 cut(s) 110, 308, 891, 1446, 1531
StuI AGGCCT 1 cut(s) 634
StyD4I CCNGG 3 cut(s) 256, 753, 1244
TaaI ACNGT 5 cut(s) 316, 623, 1060, 1098, 1169
TaiI ACGT 2 cut(s) 514, 1145
TaqI TCGA 5 cut(s) 71, 81, 215, 578, 810
TaqII GACCGA 1 cut(s) 596
TasI AATT 9 cut(s) 412, 448, 515, 745, 844, 916, 1012, 1091, 1216
TatI WGTACW 1 cut(s) 782
TfiI GAWTC 1 cut(s) 78
Tru1I TTAA 4 cut(s) 8, 1065, 1299, 1337
Tru9I TTAA 4 cut(s) 8, 1065, 1299, 1337
TscAI CASTG 5 cut(s) 43, 210, 615, 1029, 1103
TseFI GTSAC 5 cut(s) 443, 823, 1024, 1101, 1147
TseI GCWGC 2 cut(s) 143, 323
Tsp45I GTSAC 5 cut(s) 443, 823, 1024, 1101, 1147
TspDTI ATGAA 6 cut(s) 357, 362, 402, 954, 1255, 1518
TspGWI ACGGA 2 cut(s) 288, 1166
TspRI CASTG 5 cut(s) 43, 210, 615, 1029, 1103
Tth111I GACNNNGTC 1 cut(s) 44
Vha464I CTTAAG 1 cut(s) 1336
XapI RAATTY 2 cut(s) 515, 1216
XbaI TCTAGA 1 cut(s) 109
XceI RCATGY 1 cut(s) 1184
XcmI CCANNNNNNNNNTGG 1 cut(s) 334
XmnI GAANNNNTTC 1 cut(s) 634
XspI CTAG 5 cut(s) 110, 308, 891, 1446, 1531
Zsp2I ATGCAT 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.