Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003906

Physical Location & Seq

Genomic Coordinates Forward (+)

17637934 .. 17643656

Gene Structure 5723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g21200.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3630 bp

ATGGAGGAAGATGAAGATAGGATTCTGCTGAGCAGTCTGGGCGTGACGTCGGCAAATCCAGAAGATATCGAGAGGGACATTTTATCTGAGGCAAAGAACAATGGCAATGCCGGTGGAATCGGTGAGGTTGAGGAGGAGGAGGAGGAGGGTGAGAAACCGGAGAGCATTGACCCATCCACGGCACTGTATAACAAACTGAGGGCGGTTGAGTTTGAAATCGATGCCGTGGCATCCACTGTTGAGCATGAACAAGGTGGTGTTGGTGATGGTGATGATGGCGAGGAACCGGGGGATAAGGAGGATAATGTTGAGGCTTCTGACAGCCTGCAGCATGCTCTGGCCACTGATAGACTACGGAGTCTGAAGAAGACAAAGGCACAGCTTGAGAAAGAGCTTTCGGACTTGGGCAAGCAAAGGCCTTCTAAGCGGATTGAGCATGACAAAGTCTTGTTAAATATTGTTAAGGATAAGCCTGCACCCAAGAGGAAGTCGAAGCAAGTTGAGAAACCTGGCAAGAAACAAGAAAAGCGGGTTAAAACAGTCTCGTTTGATGAGGATGATGGCTTTGATGCCGTGTTGGATGCAGCCTCCACGGGATTTGTTGAAACGGAAAGAGATGAATTAGTTCGAAAAGGAATCTTAACTCCTTTTCATAAACTAAAGGGCTTTGAACGACGCCTTCAAGATGTAGGGCCATCTCAGAGGCAGAATGATCCCGCAGAAGAAGACAGAAATGATGATTTGTTTTCAGCCAGTGTTGCCAGAGCAGCCCAGTCAATATCAAAGGCTGCACAAGCCCGCCCAACTACGAAGCTGCTTGATTCAGAAGCTCTACCAAAGCTTGAGGCACCAACTTATTCTTTCCAGAGGCTAAGGAAACCTCTGAAAATCCCTCAATCCCTTGAAAATGATGCCCAGAAGAAGAAAAACTCAGGAATGAAAAGGAAGCGTCCTTTGCCTGAGAAGCGATGGAGAAAGCGCATTTCTCATGAGGAAATGAATGTGAATGGAAATGAGGTGAGTACCCCCAGTTGCGAAGAAGGAAACCAGGAAGATACTCGAGATGTAGATGACGATGAGTATCCTCATGTTACCCTTGAAGGGGGCTTGAAAATCCCCGAGTACATTTTTGAACAACTCTTTGACTATCAAAAGGTAGGGGTCCAGTGGCTCTGGGAATTGCATTGCCAAAAAGCAGGTGGAATCATTGGAGATGAGATGGGTCTTGGTAAAACCATCCAGGTCTTATCTTTCCTTGGTGCGTTACATTTCAGTCGTATGTACAAACCAAGCATCATTATATGCCCAGTTACACTTTTGCGACAATGGAGAAGGGAAGCTAAGAAATGGTACCCAAGTTTTCATGTGGAGCTACTTCATGATTCTGCTCAGGATTCGACTAACAGAAAAAAGCAATACAAATCTTCTGGAAGTGATTCTGACAGTGAAGGTTCACCGGATAGTGATTATGAGAGACCTGTGTCATCAAAAGGTGCCAAAAAATGGGATTCCTTGATAAATCGTGTTTTGAGGTCAGAATCTGGGTTGCTTATAACAACTTACGAGCAACTCCGTATCGTAGGGGAAAAATTGCTAGACATTGACTGGGGTTATGCAGTTTTAGATGAAGGACACCGAATTCGGAACCCAAATGCAGAAATTACGCTAGTTTCTAAACAGTTACAAACAGTACACCGTATTATTATGACGGGTGCCCCAATTCAGAACAAGCTGACTGAACTGTGGTCCTTGTTTGATTTTGTCTTCCCTGGAAAGTTGGGGGTTTTGCCCATATTTGAGGCTGAGTTTGCTGTTCCCATATCTGTTGGCGGTTATGCAAATGCTTCACCATTACAAGTATCCACAGCATACAGGTGTGCTGTGGTTCTGCGAGATCTAATCATGCCGTATCTCCTCCGGCGCATGAAGGCTGATGTGAATGCACAGCTTCCTAAGAAGACTGAACATGTCATCTTTTGCAGCCTCACCACTGAGCAACGATCTGCGTATAGAGCTTTTCTTGCCAGCTCTGATGTGGAACAGATTTTGGACGGTAATAGGAACTCACTTTATGGAATTGATGTGATGCGTAAAATTTGCAATCACCCTGATCTGCTTGAGAGGGAACACGCTGGCCAGGATCCTGATTATGGGAATCCTGAGCGCAGTGGGAAAATGAAAGTCATTGCTCAAGTTCTTAAAGCTTGGAAGGAGCAAGGTCATCGTGTTCTTCTATTTACGCAAACTCAACAAATGCTTGATATTATTGAAAGCTTTCTCGTCGCTAGCGAGTATAGCTACCGGAGGATGGATGGTCTTACTGCCATCAAACACAGAATGGCCTTAATAGATGAATTTAACAACTCAGATGATGTGTTTATTTTCATCCTTACGACTAAAGTAGGAGGTCTAGGGACAAATTTGACAGGTGCAAATAGGGTGATCATCTTTGACCCTGACTGGAACCCTTCAACTGACATGCAGGCCAGGGAGCGTGCTTGGCGTATCGGTCAGAAACGGGATGTGACTATATATAGATTGATTACTCGTGGAACTATAGAAGAGAAGGTGTATCATAGACAGATTTACAAACATTTTCTGACAAATAAGATATTGAAAAACCCTCAGCAGAGAAGGTTCTTTAAAGCTCGAGATATGAAGGATCTCTTCATTCTGAATGAGGAGGGAGATAGTGGTGCTACTGAAACAGCTAATTTATTTGGGCAGTTGTCTGAAGATGCCAATGTTGTTTCTGCTCAGAAAGATGACCACAGTAAGCGAAAATCTAAGAAAGTTACTGTACCATGTGCCGATGCTTATGCTGGCAAAGGAAAGAACTCTGAGATTGAAACATCAAGGACAAATGGAAAAGAAAAGGATGATCACAGTGAGGGTGATGTTGATGAAGAAACAAATATTCTGAAGTGTCTTTTTGACACACAAGGGATCCATAGTGCTATGAACCATGATGTGATCATGAACGCCCATGATGAAGAGAAGATGAGGCTTGAGGAGCAAGCTTCCCAAGTTGCACAAAGAGCAGCAGAAGCGTTGCGCCTGTCACGAATGCTTCGAAGCCGCGATAGTGTGTCTGTCCCCACATGGACTGGGAAATCAGGAATGGCAGGTGCACCATCAGCTGTCCGTGGGAAATTTGGTTCTACTGTGAATTCCAGGTTGATAAGTAATGCCAAACCCTCCTCTGAGCTTTCCAATAATAGAACAAATGGGTTTGTGGCTGGGGCATCTGCCGGGAAGGCATTATCTTCTGCTGAATTACTAGCAAGGATTCGAGGAAACGAGGAAAAAGCTGTTGAAGCTGGAATTGAGCACCAGTTGGGGATGGCTTCTAGTTCTTCTAGCAGAGCAAGAGCCATGGATGCGGGGCCTTCTAGGCAGTCACATAACTTGGGTGGAGTGCAACCTGAAATACTGATTCGTAAGATCTGTACATTCCTCGAAGAAAGAGGTGGAAGTACGAATTCTGCCACAATTGTGCAGCATTTTAAGGATAGAATACCCTCAAAGGATCTTCCCTTGTTCAAGAATCTTTTGAAGGAAATAGCAAAGCTAGAGAAAACCCCGAGCGGATCAGTTTGGGTTCTAAAGCCAGAGTTTGACCAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001207 GO:0001208 GO:0003674 GO:0003824 GO:0006139 GO:0006259 GO:0006281 GO:0006283 GO:0006289 GO:0006325 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010767 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033554 GO:0034641 GO:0034644 GO:0034728 GO:0042623 GO:0043170 GO:0043618 GO:0043620 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0104004 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03420 map03420

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

1210

Amino Acids

135.53

Weight (kDa)

6.27

Isoelectric Point (pI)

44.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	383 - 705	1.5e-77	SNF2-related domain
HDA2-3	PF11496	694 - 856	2e-06	Class II histone deacetylase complex subunits 2 and 3
Helicase_C	PF00271	725 - 837	2e-24	Helicase conserved C-terminal domain
WHD_Rad26_CSB	PF25875	1145 - 1206	6.5e-14	Rad26/CSB winged helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18760 AT2G18760 AT2G18760 AT2G18760 AT2G18760 AT2G18760 AT2G18760
fragaria_vesca	FvH4_2g21200 FvH4_2g21200 FvH4_2g21200 FvH4_2g21200 FvH4_2g21200 FvH4_2g21200
malus_domestica	MD05G1194600.v1.1
prunus_persica	Prupe.8G221300_v2.0.a1
pyrus_communis	pycom05g18190 pycom10g15720
rosa_chinensis	RchiOBHm_Chr6g0287701
rosa_laevigata	RLG00000012472
rosa_multiflora	Rmu_sc0003335.1_g000002 Rmu_sc0037270.1_g000001 Rmu_sc0037271.1_g000001
rosa_roxburghii	Rroxscaffold_7G00181080 Rroxscaffold_7G00181270
rosa_rugosa	Rorug06G0190800 Rorug06G0190900 Rorug06G0191000 Rorug06G0191100
rosa_samantha	Rh6AG301300 Rh6BG307000 Rh6CG302500 Rh6CG315200 Rh6DG298700
rosa_wichuraiana	Rw6G026000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1553
AarI	CACCTGC	2 cut(s)	1187, 3116
AasI	GACNNNNNNGTC	1 cut(s)	357
AatII	GACGTC	1 cut(s)	50
Acc36I	ACCTGC	2 cut(s)	1187, 3116
Acc65I	GGTACC	1 cut(s)	1350
AccB1I	GGYRCC	4 cut(s)	847, 1350, 1493, 1712
AccB7I	CCANNNNNTGG	1 cut(s)	1503
AccBSI	CCGCTC	1 cut(s)	3588
AccII	CGCG	1 cut(s)	3081
AciI	CCGC	9 cut(s)	203, 427, 529, 717, 799, 1830, 3079, 3383, 3588
AclWI	GGATC	8 cut(s)	707, 2135, 2148, 2670, 2941, 2954, 3537, 3598
AcoI	YGGCCR	2 cut(s)	339, 2134
AcsI	RAATTY	7 cut(s)	1638, 2094, 2354, 2419, 3152, 3169, 3481
AcuI	CTGAAG	3 cut(s)	383, 2754, 2942
AcyI	GRCGYC	2 cut(s)	47, 676
AfaI	GTAC	8 cut(s)	1024, 1124, 1283, 1352, 1692, 2802, 3451, 3478
AfiI	CCNNNNNNNGG	6 cut(s)	178, 1101, 1102, 1503, 2150, 2308
AflIII	ACRYGT	1 cut(s)	1966
AjnI	CCWGG	7 cut(s)	508, 1047, 1239, 1768, 2136, 2486, 3173
AleI	CACNNNNGTG	1 cut(s)	3494
AloI	GAACNNNNNNTCC	2 cut(s)	3142, 3174
Alw21I	GWGCWC	2 cut(s)	3133, 3333
Alw26I	GTCTC	2 cut(s)	547, 1468
Alw44I	GTGCAC	1 cut(s)	3129
AlwI	GGATC	8 cut(s)	707, 2135, 2148, 2670, 2941, 2954, 3537, 3598
AlwNI	CAGNNNCTG	1 cut(s)	1541
Ama87I	CYCGRG	4 cut(s)	1059, 1118, 2649, 3583
AoxI	GGCC	7 cut(s)	339, 416, 692, 2134, 2340, 2484, 3386
ApaLI	GTGCAC	1 cut(s)	3129
ApeKI	GCWGC	8 cut(s)	328, 584, 767, 788, 814, 1980, 3041, 3499
ApoI	RAATTY	7 cut(s)	1638, 2094, 2354, 2419, 3152, 3169, 3481
ArsI	GACNNNNNNTTYG	2 cut(s)	1623, 1655
Asp700I	GAANNNNTTC	3 cut(s)	624, 1435, 2274
Asp718I	GGTACC	1 cut(s)	1350
AspLEI	GCGC	4 cut(s)	981, 1923, 2166, 3057
AspS9I	GGNCC	4 cut(s)	692, 1162, 1746, 3386
AsuC2I	CCSGG	2 cut(s)	288, 3253
AsuII	TTCGAA	2 cut(s)	628, 3073
AsuNHI	GCTAGC	1 cut(s)	2285
AvaI	CYCGRG	4 cut(s)	1059, 1118, 2649, 3583
AvaII	GGWCC	2 cut(s)	1162, 1746
BaeGI	GKGCMC	2 cut(s)	1717, 3133
BaeI	ACNNNNGTAYC	2 cut(s)	1342, 1375
BalI	TGGCCA	2 cut(s)	341, 2136
BamHI	GGATCC	2 cut(s)	2140, 2946
BanI	GGYRCC	4 cut(s)	847, 1350, 1493, 1712
BauI	CACGAG	1 cut(s)	2547
BbsI	GAAGAC	4 cut(s)	374, 732, 1756, 1964
Bbv12I	GWGCWC	2 cut(s)	3133, 3333
BbvCI	CCTCAGC	1 cut(s)	2625
BbvI	GCAGC	8 cut(s)	340, 596, 775, 779, 801, 1992, 3053, 3511
BceAI	ACGGC	4 cut(s)	195, 209, 557, 1891
BcgI	CGANNNNNNTGC	4 cut(s)	2204, 2238, 2801, 2835
BciT130I	CCWGG	7 cut(s)	510, 1049, 1241, 1770, 2138, 2488, 3175
BciVI	GTATCC	2 cut(s)	1092, 1870
BclI	TGATCA	3 cut(s)	2442, 2881, 2973
BcnI	CCSGG	2 cut(s)	288, 3253
BcoDI	GTCTC	2 cut(s)	547, 1468
BfaI	CTAG	9 cut(s)	1595, 1667, 2286, 2411, 3281, 3351, 3360, 3393, 3572
BfmI	CTRYAG	2 cut(s)	326, 2556
BfuAI	ACCTGC	2 cut(s)	1187, 3116
BfuI	GTATCC	2 cut(s)	1092, 1870
BglI	GCCNNNNNGGC	2 cut(s)	3257, 3394
BglII	AGATCT	2 cut(s)	1894, 3444
BisI	GCNGC	9 cut(s)	329, 585, 768, 789, 815, 1981, 3042, 3079, 3500
BlpI	GCTNAGC	1 cut(s)	29
BlsI	GCNGC	9 cut(s)	330, 586, 769, 790, 816, 1982, 3043, 3080, 3501
Bme1390I	CCNGG	9 cut(s)	288, 510, 1049, 1241, 1770, 2138, 2488, 3175, 3253
Bme18I	GGWCC	2 cut(s)	1162, 1746
BmeT110I	CYCGRG	4 cut(s)	1059, 1118, 2649, 3583
BmgT120I	GGNCC	4 cut(s)	692, 1162, 1746, 3386
BmrFI	CCNGG	9 cut(s)	288, 510, 1049, 1241, 1770, 2138, 2488, 3175, 3253
BmrI	ACTGGG	5 cut(s)	766, 1023, 1301, 1615, 3117
BmtI	GCTAGC	1 cut(s)	2289
BmuI	ACTGGG	5 cut(s)	766, 1023, 1301, 1615, 3117
BoxI	GACNNNNGTC	1 cut(s)	1480
BpiI	GAAGAC	4 cut(s)	374, 732, 1756, 1964
Bpu10I	CCTNAGC	4 cut(s)	872, 1389, 2160, 2625
Bpu1102I	GCTNAGC	1 cut(s)	29
Bpu14I	TTCGAA	2 cut(s)	628, 3073
BpuEI	CTTGAG	5 cut(s)	404, 863, 2138, 2175, 3029
BpuMI	CCSGG	2 cut(s)	288, 3253
Bsa29I	ATCGAT	1 cut(s)	219
BsaBI	GATNNNNATC	1 cut(s)	1080
BsaHI	GRCGYC	2 cut(s)	47, 676
BsaI	GGTCTC	1 cut(s)	1468
BsaJI	CCNNGG	9 cut(s)	177, 225, 287, 591, 1255, 1768, 2487, 3145, 3375
BsaWI	WCCGGW	3 cut(s)	157, 1456, 2301
Bsc4I	CCNNNNNNNGG	6 cut(s)	178, 1101, 1102, 1503, 2150, 2308
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	9 cut(s)	753, 772, 1029, 1165, 1307, 1610, 2465, 3112, 3334
Bse3DI	GCAATG	3 cut(s)	112, 1183, 2184
Bse8I	GATNNNNATC	1 cut(s)	1080
BseBI	CCWGG	7 cut(s)	510, 1049, 1241, 1770, 2138, 2488, 3175
BseCI	ATCGAT	1 cut(s)	219
BseDI	CCNNGG	9 cut(s)	177, 225, 287, 591, 1255, 1768, 2487, 3145, 3375
BseJI	GATNNNNATC	1 cut(s)	1080
BseLI	CCNNNNNNNGG	6 cut(s)	178, 1101, 1102, 1503, 2150, 2308
BseMI	GCAATG	3 cut(s)	112, 1183, 2184
BseNI	ACTGG	9 cut(s)	753, 772, 1029, 1165, 1307, 1610, 2465, 3112, 3334
BseRI	GAGGAG	9 cut(s)	146, 149, 152, 155, 158, 1904, 2696, 3026, 3190
BseSI	GKGCMC	2 cut(s)	1717, 3133
BseXI	GCAGC	8 cut(s)	340, 596, 775, 779, 801, 1992, 3053, 3511
BseYI	CCCAGC	1 cut(s)	3239
BsgI	GTGCAG	3 cut(s)	459, 774, 3518
Bsh1236I	CGCG	1 cut(s)	3081
BshFI	GGCC	7 cut(s)	341, 418, 694, 2136, 2342, 2486, 3388
BshNI	GGYRCC	4 cut(s)	847, 1350, 1493, 1712
BshVI	ATCGAT	1 cut(s)	219
BsiHKAI	GWGCWC	2 cut(s)	3133, 3333
BsiHKCI	CYCGRG	4 cut(s)	1059, 1118, 2649, 3583
BsiSI	CCGG	7 cut(s)	111, 158, 287, 1457, 1918, 2302, 3252
BslFI	GGGAC	3 cut(s)	89, 2428, 3080
BslI	CCNNNNNNNGG	6 cut(s)	178, 1101, 1102, 1503, 2150, 2308
BsmAI	GTCTC	2 cut(s)	547, 1468
BsmFI	GGGAC	3 cut(s)	89, 2428, 3080
BsmI	GAATGC	2 cut(s)	1945, 3072
BsnI	GGCC	7 cut(s)	341, 418, 694, 2136, 2342, 2486, 3388
Bso31I	GGTCTC	1 cut(s)	1468
BsoBI	CYCGRG	4 cut(s)	1059, 1118, 2649, 3583
Bsp119I	TTCGAA	2 cut(s)	628, 3073
Bsp1286I	GDGCHC	3 cut(s)	1717, 3133, 3333
Bsp1407I	TGTACA	2 cut(s)	1281, 3449
Bsp1720I	GCTNAGC	1 cut(s)	29
Bsp19I	CCATGG	1 cut(s)	3375
BspACI	CCGC	9 cut(s)	203, 427, 529, 717, 799, 1830, 3079, 3383, 3588
BspANI	GGCC	7 cut(s)	341, 418, 694, 2136, 2342, 2486, 3388
BspDI	ATCGAT	1 cut(s)	219
BspFNI	CGCG	1 cut(s)	3081
BspHI	TCATGA	3 cut(s)	988, 1378, 2976
BspMAI	CTGCAG	1 cut(s)	330
BspMI	ACCTGC	2 cut(s)	1187, 3116
BspOI	GCTAGC	1 cut(s)	2289
BspPI	GGATC	8 cut(s)	707, 2135, 2148, 2670, 2941, 2954, 3537, 3598
BspT104I	TTCGAA	2 cut(s)	628, 3073
BspT107I	GGYRCC	4 cut(s)	847, 1350, 1493, 1712
BspTNI	GGTCTC	1 cut(s)	1468
BsrBI	CCGCTC	1 cut(s)	3588
BsrDI	GCAATG	3 cut(s)	112, 1183, 2184
BsrFI	RCCGGY	1 cut(s)	110
BsrGI	TGTACA	2 cut(s)	1281, 3449
BsrI	ACTGG	9 cut(s)	753, 772, 1029, 1165, 1307, 1610, 2465, 3112, 3334
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	9 cut(s)	177, 225, 287, 591, 1255, 1768, 2487, 3145, 3375
BssNI	GRCGYC	2 cut(s)	47, 676
BssSI	CACGAG	1 cut(s)	2547
BssT1I	CCWWGG	2 cut(s)	1255, 3375
Bst2BI	CACGAG	1 cut(s)	2547
Bst2UI	CCWGG	7 cut(s)	510, 1049, 1241, 1770, 2138, 2488, 3175
Bst6I	CTCTTC	3 cut(s)	2556, 2672, 2988
BstACI	GRCGYC	2 cut(s)	47, 676
BstAUI	TGTACA	2 cut(s)	1281, 3449
BstBI	TTCGAA	2 cut(s)	628, 3073
BstDSI	CCRYGG	5 cut(s)	177, 225, 591, 3145, 3375
BstFNI	CGCG	1 cut(s)	3081
BstHHI	GCGC	4 cut(s)	981, 1923, 2166, 3057
BstMAI	GTCTC	2 cut(s)	547, 1468
BstNI	CCWGG	7 cut(s)	510, 1049, 1241, 1770, 2138, 2488, 3175
BstNSI	RCATGY	3 cut(s)	335, 1970, 2482
BstPAI	GACNNNNGTC	1 cut(s)	1480
BstSCI	CCNGG	9 cut(s)	286, 508, 1047, 1239, 1768, 2136, 2486, 3173, 3251
BstSFI	CTRYAG	2 cut(s)	326, 2556
BstSLI	GKGCMC	2 cut(s)	1717, 3133
BstUI	CGCG	1 cut(s)	3081
BstV1I	GCAGC	8 cut(s)	340, 596, 775, 779, 801, 1992, 3053, 3511
BstV2I	GAAGAC	4 cut(s)	374, 732, 1756, 1964
BstX2I	RGATCY	6 cut(s)	1894, 2140, 2662, 2946, 3444, 3529
BstYI	RGATCY	6 cut(s)	1894, 2140, 2662, 2946, 3444, 3529
Bsu15I	ATCGAT	1 cut(s)	219
BsuI	GTATCC	2 cut(s)	1092, 1870
BsuRI	GGCC	7 cut(s)	341, 418, 694, 2136, 2342, 2486, 3388
BsuTUI	ATCGAT	1 cut(s)	219
BtgI	CCRYGG	5 cut(s)	177, 225, 591, 3145, 3375
BtgZI	GCGATG	1 cut(s)	982
BtsI	GCAGTG	1 cut(s)	2173
BtsIMutI	CAGTG	9 cut(s)	182, 234, 342, 760, 1172, 1450, 1989, 2173, 2893
BveI	ACCTGC	2 cut(s)	1187, 3116
CaiI	CAGNNNCTG	1 cut(s)	1541
CciI	TCATGA	3 cut(s)	988, 1378, 2976
CfoI	GCGC	4 cut(s)	981, 1923, 2166, 3057
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	4 cut(s)	692, 1162, 1746, 3386
ClaI	ATCGAT	1 cut(s)	219
CseI	GACGC	2 cut(s)	684, 938
Csp6I	GTAC	8 cut(s)	1023, 1123, 1282, 1351, 1691, 2801, 3450, 3477
CspCI	CAANNNNNGTGG	4 cut(s)	94, 129, 580, 615
CviQI	GTAC	8 cut(s)	1023, 1123, 1282, 1351, 1691, 2801, 3450, 3477
DraI	TTTAAA	1 cut(s)	2644
DrdI	GACNNNNNNGTC	1 cut(s)	357
DseDI	GACNNNNNNGTC	1 cut(s)	357
EaeI	YGGCCR	2 cut(s)	339, 2134
Eam1104I	CTCTTC	3 cut(s)	2556, 2672, 2988
EarI	CTCTTC	3 cut(s)	2556, 2672, 2988
Eco130I	CCWWGG	2 cut(s)	1255, 3375
Eco147I	AGGCCT	1 cut(s)	418
Eco31I	GGTCTC	1 cut(s)	1468
Eco32I	GATATC	1 cut(s)	67
Eco47I	GGWCC	2 cut(s)	1162, 1746
Eco57I	CTGAAG	3 cut(s)	383, 2754, 2942
Eco88I	CYCGRG	4 cut(s)	1059, 1118, 2649, 3583
EcoO109I	RGGNCCY	1 cut(s)	3386
EcoRI	GAATTC	3 cut(s)	1638, 3169, 3481
EcoRII	CCWGG	7 cut(s)	508, 1047, 1239, 1768, 2136, 2486, 3173
EcoRV	GATATC	1 cut(s)	67
EcoT14I	CCWWGG	2 cut(s)	1255, 3375
ErhI	CCWWGG	2 cut(s)	1255, 3375
FalI	AAGNNNNNCTT	2 cut(s)	2651, 2683
FaqI	GGGAC	3 cut(s)	89, 2428, 3080
FauI	CCCGC	4 cut(s)	522, 724, 806, 3376
FbaI	TGATCA	3 cut(s)	2442, 2881, 2973
Fnu4HI	GCNGC	9 cut(s)	329, 585, 768, 789, 815, 1981, 3042, 3079, 3500
Fsp4HI	GCNGC	9 cut(s)	329, 585, 768, 789, 815, 1981, 3042, 3079, 3500
FspBI	CTAG	9 cut(s)	1595, 1667, 2286, 2411, 3281, 3351, 3360, 3393, 3572
GlaI	GCGC	4 cut(s)	980, 1922, 2165, 3056
GluI	GCNGC	9 cut(s)	329, 585, 768, 789, 815, 1981, 3042, 3079, 3500
GsaI	CCCAGC	1 cut(s)	3243
HaeIII	GGCC	7 cut(s)	341, 418, 694, 2136, 2342, 2486, 3388
HapII	CCGG	7 cut(s)	111, 158, 287, 1457, 1918, 2302, 3252
HgaI	GACGC	2 cut(s)	684, 938
HhaI	GCGC	4 cut(s)	981, 1923, 2166, 3057
Hin1I	GRCGYC	2 cut(s)	47, 676
Hin6I	GCGC	4 cut(s)	979, 1921, 2164, 3055
HinP1I	GCGC	4 cut(s)	979, 1921, 2164, 3055
HindIII	AAGCTT	4 cut(s)	839, 2202, 2272, 3018
HpaII	CCGG	7 cut(s)	111, 158, 287, 1457, 1918, 2302, 3252
Hpy166II	GTNNAC	3 cut(s)	1454, 1693, 3131
Hpy8I	GTNNAC	3 cut(s)	1454, 1693, 3131
Hpy99I	CGWCG	3 cut(s)	52, 678, 2285
HpyCH4IV	ACGT	1 cut(s)	47
HpySE526I	ACGT	1 cut(s)	47
Hsp92I	GRCGYC	2 cut(s)	47, 676
HspAI	GCGC	4 cut(s)	979, 1921, 2164, 3055
KpnI	GGTACC	1 cut(s)	1354
Ksp22I	TGATCA	3 cut(s)	2442, 2881, 2973
LmnI	GCTCC	4 cut(s)	1369, 2212, 2491, 3013
Lsp1109I	GCAGC	8 cut(s)	340, 596, 775, 779, 801, 1992, 3053, 3511
MaeI	CTAG	9 cut(s)	1595, 1667, 2286, 2411, 3281, 3351, 3360, 3393, 3572
MaeII	ACGT	1 cut(s)	47
MaeIII	GTNAC	9 cut(s)	43, 1090, 1263, 1309, 1680, 2524, 2794, 3060, 3399
MbiI	CCGCTC	1 cut(s)	3588
MfeI	CAATTG	1 cut(s)	3492
MflI	RGATCY	6 cut(s)	1894, 2140, 2662, 2946, 3444, 3529
MhlI	GDGCHC	3 cut(s)	1717, 3133, 3333
MlsI	TGGCCA	2 cut(s)	341, 2136
MluNI	TGGCCA	2 cut(s)	341, 2136
MlyI	GAGTC	1 cut(s)	367
MmeI	TCCRAC	1 cut(s)	558
Mox20I	TGGCCA	2 cut(s)	341, 2136
MroXI	GAANNNNTTC	3 cut(s)	624, 1435, 2274
MscI	TGGCCA	2 cut(s)	341, 2136
MseI	TTAA	9 cut(s)	452, 462, 534, 641, 2199, 2345, 2358, 2643, 3507
MslI	CAYNNNNRTG	2 cut(s)	1873, 3494
Msp20I	TGGCCA	2 cut(s)	341, 2136
MspA1I	CMGCKG	1 cut(s)	3140
MspI	CCGG	7 cut(s)	111, 158, 287, 1457, 1918, 2302, 3252
MspR9I	CCNGG	9 cut(s)	288, 510, 1049, 1241, 1770, 2138, 2488, 3175, 3253
MunI	CAATTG	1 cut(s)	3492
Mva1269I	GAATGC	2 cut(s)	1945, 3072
MvaI	CCWGG	7 cut(s)	510, 1049, 1241, 1770, 2138, 2488, 3175
MvnI	CGCG	1 cut(s)	3081
NciI	CCSGG	2 cut(s)	288, 3253
NcoI	CCATGG	1 cut(s)	3375
NheI	GCTAGC	1 cut(s)	2285
NmuCI	GTSAC	4 cut(s)	43, 2524, 3060, 3399
NspI	RCATGY	3 cut(s)	335, 1970, 2482
NspV	TTCGAA	2 cut(s)	628, 3073
OliI	CACNNNNGTG	1 cut(s)	3494
PaeI	GCATGC	1 cut(s)	335
PaeR7I	CTCGAG	2 cut(s)	1059, 2649
PagI	TCATGA	3 cut(s)	988, 1378, 2976
PaqCI	CACCTGC	2 cut(s)	1187, 3116
PceI	AGGCCT	1 cut(s)	418
PciI	ACATGT	1 cut(s)	1966
PcsI	WCGNNNNNNNCGW	2 cut(s)	2286, 3070
PctI	GAATGC	2 cut(s)	1945, 3072
PdmI	GAANNNNTTC	3 cut(s)	624, 1435, 2274
PflFI	GACNNNGTC	1 cut(s)	443
PflMI	CCANNNNNTGG	1 cut(s)	1503
PkrI	GCNGC	9 cut(s)	330, 586, 769, 790, 816, 1982, 3043, 3080, 3501
PleI	GAGTC	1 cut(s)	366
PpsI	GAGTC	1 cut(s)	366
PscI	ACATGT	1 cut(s)	1966
PshAI	GACNNNNGTC	1 cut(s)	1480
PsiI	TTATAA	1 cut(s)	1553
Psp6I	CCWGG	7 cut(s)	508, 1047, 1239, 1768, 2136, 2486, 3173
PspFI	CCCAGC	1 cut(s)	3239
PspGI	CCWGG	7 cut(s)	508, 1047, 1239, 1768, 2136, 2486, 3173
PspPI	GGNCC	4 cut(s)	692, 1162, 1746, 3386
PstI	CTGCAG	1 cut(s)	330
PstNI	CAGNNNCTG	1 cut(s)	1541
PsuI	RGATCY	6 cut(s)	1894, 2140, 2662, 2946, 3444, 3529
PsyI	GACNNNGTC	1 cut(s)	443
PvuII	CAGCTG	1 cut(s)	3140
RsaI	GTAC	8 cut(s)	1024, 1124, 1283, 1352, 1692, 2802, 3451, 3478
RsaNI	GTAC	8 cut(s)	1023, 1123, 1282, 1351, 1691, 2801, 3450, 3477
RseI	CAYNNNNRTG	2 cut(s)	1873, 3494
SaqAI	TTAA	9 cut(s)	452, 462, 534, 641, 2199, 2345, 2358, 2643, 3507
SatI	GCNGC	9 cut(s)	329, 585, 768, 789, 815, 1981, 3042, 3079, 3500
Sau96I	GGNCC	4 cut(s)	692, 1162, 1746, 3386
SchI	GAGTC	1 cut(s)	367
ScrFI	CCNGG	9 cut(s)	288, 510, 1049, 1241, 1770, 2138, 2488, 3175, 3253
SduI	GDGCHC	3 cut(s)	1717, 3133, 3333
SfcI	CTRYAG	2 cut(s)	326, 2556
Sfr274I	CTCGAG	2 cut(s)	1059, 2649
SfuI	TTCGAA	2 cut(s)	628, 3073
SinI	GGWCC	2 cut(s)	1162, 1746
SlaI	CTCGAG	2 cut(s)	1059, 2649
SmiMI	CAYNNNNRTG	2 cut(s)	1873, 3494
SmlI	CTYRAG	7 cut(s)	383, 842, 1059, 2117, 2190, 2649, 3008
SmoI	CTYRAG	7 cut(s)	383, 842, 1059, 2117, 2190, 2649, 3008
SphI	GCATGC	1 cut(s)	335
SseBI	AGGCCT	1 cut(s)	418
SsiI	CCGC	9 cut(s)	203, 427, 529, 717, 799, 1830, 3079, 3383, 3588
SspI	AATATT	2 cut(s)	457, 2917
SspMI	CTAG	9 cut(s)	1595, 1667, 2286, 2411, 3281, 3351, 3360, 3393, 3572
StuI	AGGCCT	1 cut(s)	418
StyD4I	CCNGG	9 cut(s)	286, 508, 1047, 1239, 1768, 2136, 2486, 3173, 3251
StyI	CCWWGG	2 cut(s)	1255, 3375
TaiI	ACGT	1 cut(s)	50
TaqII	GACCGA	1 cut(s)	2498
TatI	WGTACW	4 cut(s)	1122, 1281, 1690, 3449
TauI	GCSGC	1 cut(s)	3081
Tru1I	TTAA	9 cut(s)	452, 462, 534, 641, 2199, 2345, 2358, 2643, 3507
Tru9I	TTAA	9 cut(s)	452, 462, 534, 641, 2199, 2345, 2358, 2643, 3507
TscAI	CASTG	9 cut(s)	189, 241, 349, 760, 1172, 1450, 1996, 2173, 2893
TseFI	GTSAC	4 cut(s)	43, 2524, 3060, 3399
TseI	GCWGC	8 cut(s)	328, 584, 767, 788, 814, 1980, 3041, 3499
Tsp45I	GTSAC	4 cut(s)	43, 2524, 3060, 3399
TspGWI	ACGGA	4 cut(s)	370, 623, 1562, 3134
TspRI	CASTG	9 cut(s)	189, 241, 349, 760, 1172, 1450, 1996, 2173, 2893
Tth111I	GACNNNGTC	1 cut(s)	443
Van91I	CCANNNNNTGG	1 cut(s)	1503
VneI	GTGCAC	1 cut(s)	3129
VpaK11BI	GGWCC	2 cut(s)	1162, 1746
XapI	RAATTY	7 cut(s)	1638, 2094, 2354, 2419, 3152, 3169, 3481
XceI	RCATGY	3 cut(s)	335, 1970, 2482
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1196, 2032
XhoI	CTCGAG	2 cut(s)	1059, 2649
XmnI	GAANNNNTTC	3 cut(s)	624, 1435, 2274
XspI	CTAG	9 cut(s)	1595, 1667, 2286, 2411, 3281, 3351, 3360, 3393, 3572
ZraI	GACGTC	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.