Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003906

Physical Location & Seq

Genomic Coordinates Reverse (-)

20455184 .. 20460982

Gene Structure 5799 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00181270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3561 bp

ATGGAGGAAGACCAAGATAGGATTTTGCTGAGCAGTTTGGGCGTCACGTCGGCCAATCCCGAAGATATTGAGAGGGACATTTTATCTGAGGCAAAGAATAATGGCAATGCCGGTAACATTGGTGAGGCTGGAGGGAGCAATGAGGAGGAGGAGGAGGAGGAGTTGGGGGAGAAACTGGAGAGTGTTGATCCATCCGCGGCCAGCCACGCCAAACTCTATAACAAATTGAGGGCAGTTGAGTTTGAAATCGATGCGGTGGCATCCACTGTCGAGCATGAACATGGTGGGAATGAAGACGGCATTGGTGATGGTGATGATGGCGAGGAACGGGGGATAAGGAGGATGACGTTGAGGCTTCTGATAACCTTCAGCATGCTTTGGCCACTGATAGACTACGGAGAAAAGCCTGCACCCAAGAGGAAGTTGAAACAGGTTCAGAAGTCTGGCAAAAAACAAGAAAAACGGGTTAAAACAGTCTCATTTGATGAGGATGATGATTTTGATGCCGTGTTGGATGCAGCCTCCACGGGGTTTGTTGAAACGGAAAGAGATGAATTAGTTCGAAAAGGGATCTTAACTCCTTTCCATAAACTAAAGGGCTTTGAACGCCGCCTTCAAGATGGAGGGCCATCTCAGAGGCATAATGATCCCGCAGAAGAAGACAGAAATGATGATTTGTTTTCAGCCAGTGTTGCTAGAGCAGCCCAATCAATATCAAAGGCTGCACAAACCCGCCCAACTACAAAGCTGCTTGATTCGGAAGCTCTACCAAGGCTTGAGGCAGCCACCTATCCTTTCCAGAGGCTAAGGAAACCTCTGAAAATCCCCCAATCCCTTGAAAATGATACACAGAAGAACAAAAAATCAGGAACAAGAAGGAAGCGTCCTTTGCCTGAGAAGCGATGGAGAAATCGCATTTCTCGTGAGGAAATATATTTGAACGGAAACGAGGTGAGCACCCCCAGGGAAGAAGAAAACCAGGAAGATACTGGAGATGTAGATGATGATGAGTATCCTCATGTTACCCTTGAAGGGGGCTTGAAAATCCCTGAGTACATTTTTGAACAACTCTTTGACTATCAAAAAGTAGGGGTCCAGTGGCTCTGGGAATTGCATTGCCAAAAAGCAGGTGGAATCATTGGAGATGAGATGGGTCTTGGTAAAACCATCCAGGTCTTATCTTTCCTTGGTGCACTGCATTTCAGTCGTATGTACAAACCAAGCATTATTGTATGCCCAGTTACACTATTGCGACAATGGAGAAGGGAGGCTAAGAAATGGTACCCAAGCTTTCATGTGGAGTTACTTCATGATTCTGCTCAGGACTCAAGTAATAGAAAAAAACAATATAAATCTTCTGGAAGTGATTCTGATAGTGAAGGTTCACTGGATAGTGATTATGAGAGACCTGTATCATCCAAAGGTGCCAGAAAATGGGATGCCTTGATAAATCGTGTTTTGAGGTCAGAATCTGGGTTGCTTATTACAACTTATGAGCAACTTCGTATCGTTGGGGAAAAATTGCTGGACGTTGACTGGGGTTATGCAGTTTTGGATGAAGGACACCGAATTCGGAATCCAAACGCAGAAATTACTCTAGTTTGTAAACAGTTACAAACAGTACACCGTATTATCATGACGGGTGCCCCAATTCAGAACAAGCTGACTGAACTGTGGTCCTTGTTTGATTTTGTCTTCCCTGGAAAGTTGGGGGTTTTGCCCATATTTGAGGCTGAGTTTGCCGTTCCCATATCTGTTGGCGGTTATGCGAATGCTTCACCGTTACAAGTATCCACAGCTTACAGGTGTGCTGTGGTTCTGCGAGATCTGATCATGCCGTATCTCCTCCGGCGCATGAAGGCTGATGTGAATGCACATCTTCCTAAGAAGACTGAACATGTCATCTTTTGCAGCCTCACCACTGAGCAACGATCTGCATATAGAGCTTTTCTTGCCAGCTCTGATGTGGAACAGATTTTGGACGGCAATAGGAATTCACTTTATGGAATTGATGTGATGCGTAAAATTTGCAACCACCCTGATCTGCTTGAGAGGGAACATGCTGGCCAGAACCCTGATTATGGGAATCCTGAGCGCAGTGGGAAAATGAAAGTTATTGCCCAAGTTCTTAAAGCTTGGAAGGAGCAAGGTCATCGTGTTCTTCTATTTACACAAACCCAACAAATGCTTGACATTATTGAAAGTTTTCTGATCGCTGGTGAATATAGCTACAGAAGGATGGATGGTCTGACTGCCATCAAACACAGAATGGCCTTAATAGATGAATTTAACAACTCAAATGATGTGTTTATTTTCATCCTTACGACTAAAGTAGGAGGTCTAGGGACAAATTTGACAGGTGCAAATAGGGTGCTCATCTTTGACCCTGACTGGAACCCTTCAACTGACATGCAGGCCAGGGAGCGTGCTTGGCGTATTGGTCAGAAGCGGGACGTAACCATATATAGATTGATTACTCGTGGAACTATAGAAGAGAAGGTGTATCATAGACAGATTTACAAACATTTTCTCACGAATAAGATATTGAAAAACCCCCAGCAGAGAAGGTTCTTTAAAGCTCGAGATATGAAGGATCTCTTCATTCTGAATGATGAGGGAGACAGTGGGGCTACTGAAACAGCTAATATATTTGGGCAGTTATCTGAAGATGCCAATATTGTTTGTGCTCAGAAAGATGACCACAGTAAGCGCGAGTCTAAGAAAGTTACTGTACCATGTGCCAATGCTTCTGCTGGCAAAAGAAAGAACTCTGAGATTGAATCATCAAGGAGAAATGGAAAAGAAAAAGCTGATCACAGTGAGGGCGATGCGGATGAAGAAACAAATATTCTGAAGTGTCTTTTTGACACGCAAGGGATCCATAGTGCTATGAACCATGATGTGATCATGAATGCCCATGATGAAGACAAGATGAGGCTTGAGGAGCAAGCTTCCCAAGTTGCACAAAGAGCAGCAGATGCATTGCGCCAGTCACGAATGCTTCGAAGCCGTGACAGTGTATCTGTCCCCACATGGACTGGGAAATCAGGAATGGCAGGTGCACCATCAGCTGTCCGTGGGAAATTTGGTTCTACTGTGAATTCCCGGTTGATAAGTAATACCAAACCCTCCGCTGAAGTTTCCAACGGTAGAACAAATGGGTTCTTGGCTGGGGCATCTGCCGGGAAGGCATTATCTTCTGCTGAATTACTAGCAAGAATTCGAGGAAACCAGGAAAAAGCTGTTGAAGCTGGAATTGAGCAGCAGTTTGGGATGGCTTCTAGTTCTTCTAGCAGAGGAAAAGCCGTGGATGCTGGGCCTTCTAGGCAGTCACAGAACTTGGGTGGAGTGCAACCTGAAGTACTGATTCGTAAGATCTGTACATTCCTCCAAGAAAGAGGTGGAAGTACGAATTCTGCCACAATAGTGCAGCATTTTAAGGATAGAATACCCTCAAAAGATCTTCCCTTGTTTAAGAATCTTTTGAAGGAAATAGCAAAGCTAGAGAAAACCCCAAGCGGATCAGTTTGGGTTCTAAAGCCAGAGTTTCATCAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001207 GO:0001208 GO:0003674 GO:0003824 GO:0006139 GO:0006259 GO:0006281 GO:0006283 GO:0006289 GO:0006325 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010767 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033554 GO:0034641 GO:0034644 GO:0034728 GO:0042623 GO:0043170 GO:0043618 GO:0043620 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0104004 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03420 map03420

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

1186

Amino Acids

133.09

Weight (kDa)

6.66

Isoelectric Point (pI)

44.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	360 - 682	3.3e-78	SNF2-related domain
Helicase_C	PF00271	702 - 814	1.3e-23	Helicase conserved C-terminal domain
WHD_Rad26_CSB	PF25875	1121 - 1184	1.6e-14	Rad26/CSB winged helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18760 AT2G18760 AT2G18760 AT2G18760 AT2G18760 AT2G18760 AT2G18760
fragaria_vesca	FvH4_2g21200 FvH4_2g21200 FvH4_2g21200 FvH4_2g21200 FvH4_2g21200 FvH4_2g21200
malus_domestica	MD05G1194600.v1.1
prunus_persica	Prupe.8G221300_v2.0.a1
pyrus_communis	pycom05g18190 pycom10g15720
rosa_chinensis	RchiOBHm_Chr6g0287701
rosa_laevigata	RLG00000012472
rosa_multiflora	Rmu_sc0003335.1_g000002 Rmu_sc0037270.1_g000001 Rmu_sc0037271.1_g000001
rosa_roxburghii	Rroxscaffold_7G00181080 Rroxscaffold_7G00181270
rosa_rugosa	Rorug06G0190800 Rorug06G0190900 Rorug06G0191000 Rorug06G0191100
rosa_samantha	Rh6AG301300 Rh6BG307000 Rh6CG302500 Rh6CG315200 Rh6DG298700
rosa_wichuraiana	Rw6G026000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1118, 3047
Acc36I	ACCTGC	2 cut(s)	1118, 3047
Acc65I	GGTACC	1 cut(s)	1281
AccB1I	GGYRCC	3 cut(s)	1281, 1424, 1643
AccB7I	CCANNNNNTGG	1 cut(s)	1434
AccII	CGCG	2 cut(s)	197, 2712
AclWI	GGATC	7 cut(s)	182, 578, 641, 2601, 2872, 2885, 3529
AcoI	YGGCCR	4 cut(s)	51, 198, 380, 2065
AcsI	RAATTY	9 cut(s)	1569, 1993, 2025, 2285, 2350, 3083, 3100, 3219, 3412
AcuI	CTGAAG	5 cut(s)	352, 2685, 2873, 3156, 3378
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	8 cut(s)	1055, 1214, 1283, 1623, 2733, 3363, 3382, 3409
AfiI	CCNNNNNNNGG	5 cut(s)	528, 1032, 1033, 1434, 2081
AflIII	ACRYGT	1 cut(s)	1897
AjiI	CACGTC	1 cut(s)	48
AjnI	CCWGG	6 cut(s)	962, 978, 1170, 1699, 2417, 3231
AjuI	GAANNNNNNNTTGG	2 cut(s)	285, 317
AleI	CACNNNNGTG	1 cut(s)	3425
AloI	GAACNNNNNNTCC	2 cut(s)	3073, 3105
Alw21I	GWGCWC	5 cut(s)	959, 1195, 2376, 2689, 3064
Alw26I	GTCTC	3 cut(s)	481, 1399, 2613
Alw44I	GTGCAC	2 cut(s)	1191, 3060
AlwI	GGATC	7 cut(s)	182, 578, 641, 2601, 2872, 2885, 3529
AlwNI	CAGNNNCTG	1 cut(s)	1472
Ama87I	CYCGRG	1 cut(s)	2580
AoxI	GGCC	8 cut(s)	51, 198, 380, 626, 2065, 2271, 2415, 3317
ApaLI	GTGCAC	2 cut(s)	1191, 3060
ApeKI	GCWGC	9 cut(s)	518, 701, 722, 748, 782, 1911, 2972, 3262, 3430
ApoI	RAATTY	9 cut(s)	1569, 1993, 2025, 2285, 2350, 3083, 3100, 3219, 3412
ArsI	GACNNNNNNTTYG	2 cut(s)	1554, 1586
Asp700I	GAANNNNTTC	3 cut(s)	558, 1366, 2205
Asp718I	GGTACC	1 cut(s)	1281
AspLEI	GCGC	4 cut(s)	1854, 2097, 2712, 2988
AspS9I	GGNCC	4 cut(s)	626, 1093, 1677, 3317
AsuC2I	CCSGG	2 cut(s)	3106, 3184
AsuHPI	GGTGA	7 cut(s)	134, 317, 323, 964, 1770, 1909, 2231
AsuII	TTCGAA	2 cut(s)	562, 3004
AvaI	CYCGRG	1 cut(s)	2580
AvaII	GGWCC	2 cut(s)	1093, 1677
BaeGI	GKGCMC	3 cut(s)	1195, 1648, 3064
BalI	TGGCCA	2 cut(s)	382, 2067
BamHI	GGATCC	1 cut(s)	2877
BanI	GGYRCC	3 cut(s)	1281, 1424, 1643
BauI	CACGAG	2 cut(s)	921, 2478
BbsI	GAAGAC	6 cut(s)	15, 300, 666, 1687, 1895, 2931
Bbv12I	GWGCWC	5 cut(s)	959, 1195, 2376, 2689, 3064
BbvI	GCAGC	9 cut(s)	530, 709, 713, 735, 794, 1923, 2984, 3274, 3442
BceAI	ACGGC	7 cut(s)	313, 491, 1727, 1822, 1999, 2994, 3290
BcgI	CGANNNNNNTGC	4 cut(s)	1187, 1221, 2135, 2169
BciT130I	CCWGG	6 cut(s)	964, 980, 1172, 1701, 2419, 3233
BciVI	GTATCC	2 cut(s)	1023, 1801
BclI	TGATCA	3 cut(s)	1830, 2812, 2904
BcnI	CCSGG	2 cut(s)	3106, 3184
BcoDI	GTCTC	3 cut(s)	481, 1399, 2613
BfaI	CTAG	8 cut(s)	696, 1598, 2342, 3212, 3282, 3291, 3324, 3503
BfmI	CTRYAG	2 cut(s)	2230, 2487
BfuAI	ACCTGC	2 cut(s)	1118, 3047
BfuI	GTATCC	2 cut(s)	1023, 1801
BglI	GCCNNNNNGGC	2 cut(s)	3188, 3325
BglII	AGATCT	3 cut(s)	1825, 3375, 3460
BlpI	GCTNAGC	1 cut(s)	29
BmcAI	AGTACT	1 cut(s)	3363
Bme1390I	CCNGG	8 cut(s)	964, 980, 1172, 1701, 2419, 3106, 3184, 3233
Bme18I	GGWCC	2 cut(s)	1093, 1677
BmeT110I	CYCGRG	1 cut(s)	2580
BmgBI	CACGTC	1 cut(s)	48
BmgT120I	GGNCC	4 cut(s)	626, 1093, 1677, 3317
BmiI	GGNNCC	6 cut(s)	1094, 1283, 1426, 1645, 2396, 2879
BmrFI	CCNGG	8 cut(s)	964, 980, 1172, 1701, 2419, 3106, 3184, 3233
BmrI	ACTGGG	3 cut(s)	1232, 1546, 3048
BmuI	ACTGGG	3 cut(s)	1232, 1546, 3048
BpiI	GAAGAC	6 cut(s)	15, 300, 666, 1687, 1895, 2931
BpmI	CTGGAG	3 cut(s)	150, 197, 1011
Bpu10I	CCTNAGC	3 cut(s)	806, 1320, 2091
Bpu1102I	GCTNAGC	1 cut(s)	29
Bpu14I	TTCGAA	2 cut(s)	562, 3004
BpuEI	CTTGAG	4 cut(s)	797, 1312, 2069, 2960
BpuMI	CCSGG	2 cut(s)	3106, 3184
Bsa29I	ATCGAT	1 cut(s)	249
BsaBI	GATNNNNATC	1 cut(s)	1011
BsaHI	GRCGYC	1 cut(s)	42
BsaI	GGTCTC	1 cut(s)	1399
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bsc4I	CCNNNNNNNGG	5 cut(s)	528, 1032, 1033, 1434, 2081
Bse118I	RCCGGY	1 cut(s)	110
Bse3DI	GCAATG	4 cut(s)	112, 145, 1114, 2981
Bse8I	GATNNNNATC	1 cut(s)	1011
BseBI	CCWGG	6 cut(s)	964, 980, 1172, 1701, 2419, 3233
BseCI	ATCGAT	1 cut(s)	249
BseJI	GATNNNNATC	1 cut(s)	1011
BseLI	CCNNNNNNNGG	5 cut(s)	528, 1032, 1033, 1434, 2081
BseMI	GCAATG	4 cut(s)	112, 145, 1114, 2981
BseRI	GAGGAG	8 cut(s)	158, 161, 164, 167, 170, 173, 1835, 2957
BseSI	GKGCMC	3 cut(s)	1195, 1648, 3064
BseXI	GCAGC	9 cut(s)	530, 709, 713, 735, 794, 1923, 2984, 3274, 3442
BseYI	CCCAGC	3 cut(s)	2556, 3170, 3314
BsgI	GTGCAG	3 cut(s)	393, 708, 3449
Bsh1236I	CGCG	2 cut(s)	197, 2712
BshFI	GGCC	8 cut(s)	53, 200, 382, 628, 2067, 2273, 2417, 3319
BshNI	GGYRCC	3 cut(s)	1281, 1424, 1643
BshVI	ATCGAT	1 cut(s)	249
BsiHKAI	GWGCWC	5 cut(s)	959, 1195, 2376, 2689, 3064
BsiHKCI	CYCGRG	1 cut(s)	2580
BsiSI	CCGG	4 cut(s)	111, 1849, 3106, 3183
BslFI	GGGAC	4 cut(s)	89, 2359, 2465, 3011
BslI	CCNNNNNNNGG	5 cut(s)	528, 1032, 1033, 1434, 2081
BsmAI	GTCTC	3 cut(s)	481, 1399, 2613
BsmFI	GGGAC	4 cut(s)	89, 2359, 2465, 3011
BsmI	GAATGC	4 cut(s)	1777, 1876, 2917, 3003
BsnI	GGCC	8 cut(s)	53, 200, 382, 628, 2067, 2273, 2417, 3319
Bso31I	GGTCTC	1 cut(s)	1399
BsoBI	CYCGRG	1 cut(s)	2580
Bsp119I	TTCGAA	2 cut(s)	562, 3004
Bsp1286I	GDGCHC	6 cut(s)	959, 1195, 1648, 2376, 2689, 3064
Bsp1407I	TGTACA	2 cut(s)	1212, 3380
Bsp1720I	GCTNAGC	1 cut(s)	29
BspANI	GGCC	8 cut(s)	53, 200, 382, 628, 2067, 2273, 2417, 3319
BspDI	ATCGAT	1 cut(s)	249
BspFNI	CGCG	2 cut(s)	197, 2712
BspHI	TCATGA	3 cut(s)	1309, 1635, 2907
BspLI	GGNNCC	6 cut(s)	1094, 1283, 1426, 1645, 2396, 2879
BspMI	ACCTGC	2 cut(s)	1118, 3047
BspPI	GGATC	7 cut(s)	182, 578, 641, 2601, 2872, 2885, 3529
BspT104I	TTCGAA	2 cut(s)	562, 3004
BspT107I	GGYRCC	3 cut(s)	1281, 1424, 1643
BspTNI	GGTCTC	1 cut(s)	1399
BsrDI	GCAATG	4 cut(s)	112, 145, 1114, 2981
BsrFI	RCCGGY	1 cut(s)	110
BsrGI	TGTACA	2 cut(s)	1212, 3380
BssAI	RCCGGY	1 cut(s)	110
BssNI	GRCGYC	1 cut(s)	42
BssSI	CACGAG	2 cut(s)	921, 2478
BssT1I	CCWWGG	2 cut(s)	770, 1186
Bst2BI	CACGAG	2 cut(s)	921, 2478
Bst2UI	CCWGG	6 cut(s)	964, 980, 1172, 1701, 2419, 3233
Bst6I	CTCTTC	2 cut(s)	2487, 2603
BstACI	GRCGYC	1 cut(s)	42
BstAPI	GCANNNNNTGC	1 cut(s)	2978
BstAUI	TGTACA	2 cut(s)	1212, 3380
BstBI	TTCGAA	2 cut(s)	562, 3004
BstC8I	GCNNGC	9 cut(s)	202, 374, 408, 1957, 2065, 2415, 2427, 2755, 2949
BstDSI	CCRYGG	4 cut(s)	195, 525, 3076, 3306
BstFNI	CGCG	2 cut(s)	197, 2712
BstHHI	GCGC	4 cut(s)	1854, 2097, 2712, 2988
BstMAI	GTCTC	3 cut(s)	481, 1399, 2613
BstNI	CCWGG	6 cut(s)	964, 980, 1172, 1701, 2419, 3233
BstNSI	RCATGY	4 cut(s)	376, 1901, 2063, 2413
BstSCI	CCNGG	8 cut(s)	962, 978, 1170, 1699, 2417, 3104, 3182, 3231
BstSFI	CTRYAG	2 cut(s)	2230, 2487
BstSLI	GKGCMC	3 cut(s)	1195, 1648, 3064
BstUI	CGCG	2 cut(s)	197, 2712
BstV1I	GCAGC	9 cut(s)	530, 709, 713, 735, 794, 1923, 2984, 3274, 3442
BstV2I	GAAGAC	6 cut(s)	15, 300, 666, 1687, 1895, 2931
BstX2I	RGATCY	6 cut(s)	570, 1825, 2593, 2877, 3375, 3460
BstYI	RGATCY	6 cut(s)	570, 1825, 2593, 2877, 3375, 3460
Bsu15I	ATCGAT	1 cut(s)	249
BsuI	GTATCC	2 cut(s)	1023, 1801
BsuRI	GGCC	8 cut(s)	53, 200, 382, 628, 2067, 2273, 2417, 3319
BsuTUI	ATCGAT	1 cut(s)	249
BtgI	CCRYGG	4 cut(s)	195, 525, 3076, 3306
BtgZI	GCGATG	2 cut(s)	916, 2841
BtrI	CACGTC	1 cut(s)	48
BtsI	GCAGTG	2 cut(s)	1193, 2104
BveI	ACCTGC	2 cut(s)	1118, 3047
Cac8I	GCNNGC	9 cut(s)	202, 374, 408, 1957, 2065, 2415, 2427, 2755, 2949
CaiI	CAGNNNCTG	1 cut(s)	1472
CciI	TCATGA	3 cut(s)	1309, 1635, 2907
CfoI	GCGC	4 cut(s)	1854, 2097, 2712, 2988
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	4 cut(s)	626, 1093, 1677, 3317
Cfr42I	CCGCGG	1 cut(s)	198
ClaI	ATCGAT	1 cut(s)	249
CseI	GACGC	2 cut(s)	31, 872
Csp6I	GTAC	8 cut(s)	1054, 1213, 1282, 1622, 2732, 3362, 3381, 3408
CspCI	CAANNNNNGTGG	2 cut(s)	514, 549
CviQI	GTAC	8 cut(s)	1054, 1213, 1282, 1622, 2732, 3362, 3381, 3408
DraI	TTTAAA	1 cut(s)	2575
EaeI	YGGCCR	4 cut(s)	51, 198, 380, 2065
Eam1104I	CTCTTC	2 cut(s)	2487, 2603
EarI	CTCTTC	2 cut(s)	2487, 2603
Eco130I	CCWWGG	2 cut(s)	770, 1186
Eco31I	GGTCTC	1 cut(s)	1399
Eco47I	GGWCC	2 cut(s)	1093, 1677
Eco57I	CTGAAG	5 cut(s)	352, 2685, 2873, 3156, 3378
Eco88I	CYCGRG	1 cut(s)	2580
EcoRI	GAATTC	5 cut(s)	1569, 1993, 3100, 3219, 3412
EcoRII	CCWGG	6 cut(s)	962, 978, 1170, 1699, 2417, 3231
EcoT14I	CCWWGG	2 cut(s)	770, 1186
EcoT22I	ATGCAT	1 cut(s)	2983
ErhI	CCWWGG	2 cut(s)	770, 1186
FalI	AAGNNNNNCTT	2 cut(s)	2582, 2614
FaqI	GGGAC	4 cut(s)	89, 2359, 2465, 3011
FauI	CCCGC	3 cut(s)	658, 740, 2442
FbaI	TGATCA	3 cut(s)	1830, 2812, 2904
FspBI	CTAG	8 cut(s)	696, 1598, 2342, 3212, 3282, 3291, 3324, 3503
GlaI	GCGC	4 cut(s)	1853, 2096, 2711, 2987
GsaI	CCCAGC	3 cut(s)	2560, 3174, 3318
GsuI	CTGGAG	3 cut(s)	150, 197, 1011
HaeIII	GGCC	8 cut(s)	53, 200, 382, 628, 2067, 2273, 2417, 3319
HapII	CCGG	4 cut(s)	111, 1849, 3106, 3183
HgaI	GACGC	2 cut(s)	31, 872
HhaI	GCGC	4 cut(s)	1854, 2097, 2712, 2988
Hin1I	GRCGYC	1 cut(s)	42
Hin6I	GCGC	4 cut(s)	1852, 2095, 2710, 2986
HinP1I	GCGC	4 cut(s)	1852, 2095, 2710, 2986
HincII	GTYRAC	1 cut(s)	1534
HindII	GTYRAC	1 cut(s)	1534
HindIII	AAGCTT	3 cut(s)	1288, 2133, 2949
HpaII	CCGG	4 cut(s)	111, 1849, 3106, 3183
HphI	GGTGA	7 cut(s)	134, 317, 323, 964, 1770, 1909, 2231
Hpy166II	GTNNAC	6 cut(s)	1193, 1385, 1534, 1607, 1624, 3062
Hpy8I	GTNNAC	6 cut(s)	1193, 1385, 1534, 1607, 1624, 3062
Hpy99I	CGWCG	1 cut(s)	52
HpyCH4IV	ACGT	4 cut(s)	47, 347, 1530, 2454
HpySE526I	ACGT	4 cut(s)	47, 347, 1530, 2454
Hsp92I	GRCGYC	1 cut(s)	42
HspAI	GCGC	4 cut(s)	1852, 2095, 2710, 2986
KpnI	GGTACC	1 cut(s)	1285
Ksp22I	TGATCA	3 cut(s)	1830, 2812, 2904
KspI	CCGCGG	1 cut(s)	198
LmnI	GCTCC	4 cut(s)	135, 2143, 2422, 2944
Lsp1109I	GCAGC	9 cut(s)	530, 709, 713, 735, 794, 1923, 2984, 3274, 3442
MaeI	CTAG	8 cut(s)	696, 1598, 2342, 3212, 3282, 3291, 3324, 3503
MaeII	ACGT	4 cut(s)	47, 347, 1530, 2454
MflI	RGATCY	6 cut(s)	570, 1825, 2593, 2877, 3375, 3460
MhlI	GDGCHC	6 cut(s)	959, 1195, 1648, 2376, 2689, 3064
MlsI	TGGCCA	2 cut(s)	382, 2067
MluNI	TGGCCA	2 cut(s)	382, 2067
MlyI	GAGTC	2 cut(s)	1319, 2723
MmeI	TCCRAC	2 cut(s)	492, 3168
Mox20I	TGGCCA	2 cut(s)	382, 2067
Mph1103I	ATGCAT	1 cut(s)	2983
MroXI	GAANNNNTTC	3 cut(s)	558, 1366, 2205
MscI	TGGCCA	2 cut(s)	382, 2067
MseI	TTAA	8 cut(s)	468, 575, 2130, 2276, 2289, 2574, 3438, 3474
MslI	CAYNNNNRTG	2 cut(s)	279, 3425
Msp20I	TGGCCA	2 cut(s)	382, 2067
MspA1I	CMGCKG	3 cut(s)	197, 3071, 3134
MspI	CCGG	4 cut(s)	111, 1849, 3106, 3183
MspR9I	CCNGG	8 cut(s)	964, 980, 1172, 1701, 2419, 3106, 3184, 3233
Mva1269I	GAATGC	4 cut(s)	1777, 1876, 2917, 3003
MvaI	CCWGG	6 cut(s)	964, 980, 1172, 1701, 2419, 3233
MvnI	CGCG	2 cut(s)	197, 2712
NciI	CCSGG	2 cut(s)	3106, 3184
NlaIV	GGNNCC	6 cut(s)	1094, 1283, 1426, 1645, 2396, 2879
NmuCI	GTSAC	4 cut(s)	43, 2991, 3011, 3330
NsiI	ATGCAT	1 cut(s)	2983
NspI	RCATGY	4 cut(s)	376, 1901, 2063, 2413
NspV	TTCGAA	2 cut(s)	562, 3004
OliI	CACNNNNGTG	1 cut(s)	3425
PaeI	GCATGC	1 cut(s)	376
PaeR7I	CTCGAG	1 cut(s)	2580
PagI	TCATGA	3 cut(s)	1309, 1635, 2907
PaqCI	CACCTGC	2 cut(s)	1118, 3047
PasI	CCCWGGG	1 cut(s)	963
PciI	ACATGT	1 cut(s)	1897
PcsI	WCGNNNNNNNCGW	2 cut(s)	919, 3001
PctI	GAATGC	4 cut(s)	1777, 1876, 2917, 3003
PdmI	GAANNNNTTC	3 cut(s)	558, 1366, 2205
PflMI	CCANNNNNTGG	1 cut(s)	1434
PleI	GAGTC	2 cut(s)	1319, 2722
PpsI	GAGTC	2 cut(s)	1319, 2722
PscI	ACATGT	1 cut(s)	1897
Psp6I	CCWGG	6 cut(s)	962, 978, 1170, 1699, 2417, 3231
PspFI	CCCAGC	3 cut(s)	2556, 3170, 3314
PspGI	CCWGG	6 cut(s)	962, 978, 1170, 1699, 2417, 3231
PspN4I	GGNNCC	6 cut(s)	1094, 1283, 1426, 1645, 2396, 2879
PspPI	GGNCC	4 cut(s)	626, 1093, 1677, 3317
PstNI	CAGNNNCTG	1 cut(s)	1472
PsuI	RGATCY	6 cut(s)	570, 1825, 2593, 2877, 3375, 3460
PvuII	CAGCTG	1 cut(s)	3071
RsaI	GTAC	8 cut(s)	1055, 1214, 1283, 1623, 2733, 3363, 3382, 3409
RsaNI	GTAC	8 cut(s)	1054, 1213, 1282, 1622, 2732, 3362, 3381, 3408
RseI	CAYNNNNRTG	2 cut(s)	279, 3425
SacII	CCGCGG	1 cut(s)	198
SaqAI	TTAA	8 cut(s)	468, 575, 2130, 2276, 2289, 2574, 3438, 3474
Sau96I	GGNCC	4 cut(s)	626, 1093, 1677, 3317
ScaI	AGTACT	1 cut(s)	3363
SchI	GAGTC	2 cut(s)	1319, 2723
ScrFI	CCNGG	8 cut(s)	964, 980, 1172, 1701, 2419, 3106, 3184, 3233
SduI	GDGCHC	6 cut(s)	959, 1195, 1648, 2376, 2689, 3064
SfcI	CTRYAG	2 cut(s)	2230, 2487
Sfr274I	CTCGAG	1 cut(s)	2580
Sfr303I	CCGCGG	1 cut(s)	198
SfuI	TTCGAA	2 cut(s)	562, 3004
SgrBI	CCGCGG	1 cut(s)	198
SinI	GGWCC	2 cut(s)	1093, 1677
SlaI	CTCGAG	1 cut(s)	2580
SmiMI	CAYNNNNRTG	2 cut(s)	279, 3425
SmlI	CTYRAG	5 cut(s)	776, 1327, 2048, 2580, 2939
SmoI	CTYRAG	5 cut(s)	776, 1327, 2048, 2580, 2939
SphI	GCATGC	1 cut(s)	376
SspI	AATATT	2 cut(s)	2677, 2848
SspMI	CTAG	8 cut(s)	696, 1598, 2342, 3212, 3282, 3291, 3324, 3503
StyD4I	CCNGG	8 cut(s)	962, 978, 1170, 1699, 2417, 3104, 3182, 3231
StyI	CCWWGG	2 cut(s)	770, 1186
TaiI	ACGT	4 cut(s)	50, 350, 1533, 2457
TaqI	TCGA	6 cut(s)	249, 270, 562, 2581, 3004, 3223
TatI	WGTACW	5 cut(s)	1053, 1212, 1621, 3361, 3380
TauI	GCSGC	2 cut(s)	200, 612
Tru1I	TTAA	8 cut(s)	468, 575, 2130, 2276, 2289, 2574, 3438, 3474
Tru9I	TTAA	8 cut(s)	468, 575, 2130, 2276, 2289, 2574, 3438, 3474
TseFI	GTSAC	4 cut(s)	43, 2991, 3011, 3330
TseI	GCWGC	9 cut(s)	518, 701, 722, 748, 782, 1911, 2972, 3262, 3430
Tsp45I	GTSAC	4 cut(s)	43, 2991, 3011, 3330
TspGWI	ACGGA	4 cut(s)	411, 557, 957, 3065
Van91I	CCANNNNNTGG	1 cut(s)	1434
VneI	GTGCAC	2 cut(s)	1191, 3060
VpaK11BI	GGWCC	2 cut(s)	1093, 1677
XapI	RAATTY	9 cut(s)	1569, 1993, 2025, 2285, 2350, 3083, 3100, 3219, 3412
XceI	RCATGY	4 cut(s)	376, 1901, 2063, 2413
XcmI	CCANNNNNNNNNTGG	4 cut(s)	986, 1127, 1963, 3398
XhoI	CTCGAG	1 cut(s)	2580
XmnI	GAANNNNTTC	3 cut(s)	558, 1366, 2205
XspI	CTAG	8 cut(s)	696, 1598, 2342, 3212, 3282, 3291, 3324, 3503
ZrmI	AGTACT	1 cut(s)	3363
Zsp2I	ATGCAT	1 cut(s)	2983

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.