Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003906

Physical Location & Seq

Genomic Coordinates Reverse (-)

48304382 .. 48310320

Gene Structure 5939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG302500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2592 bp

ATGGAGGAAGACGAAGACAGGATTTTGCTGAGCAGTTTGGGCGTCACGTCGGCCAATCCCGAAGATATTGAGAGGCACATTTTATCTGAGGTTAAGAATAATGGCAATGCCGGTGACATTGGTGAGGCTGGAGGGAGCAATGAGGAGGAGGAGTTGGGGGAGAAACCGGAGAGTGTTGATCCATCCGTGGCCAGCCACGCCAAACTCTATAACAAATTGAGGGCAGTTGAGTTTGAAATCGATGCGGTGGCATCCACTGTCGAGCATGAACAAGGCGGGAATGAAGATGGCATTCGTGATGGTGATGATGGCGAGGAACGGGGGGATAAGGAGGATGATGTTGAGGCTTCTGATAACCTTCAGCATGCTTTGGCCACTGATAGACTACGGAGTCTGAAGAAAACAAAGGCTCAACTTGAGAAAGAGCTTTCGGACTTGGGCAAGCAAAGACCTTCTAAGGGTATTGAGCTTGACAGAGTCTTGTCTAATATTGTCAAGGAAAAGCCTGCACCCAAGAGGAAGTTGAAACAGGTTCAGAAGTCTGGCAAAAAACAAGAAAAGCGGGTTAAAACAGTCTCATTTGATGAGGATGATGATTTTGATGCCGTGTTGGATGCAGCCTCCACAGGGTTTGTTGAAACGGAAAGAGATGAATTAGTTCGAAAAGGGATCTTAACTCCTTTCCATAAACTAAAGGGCTTTGAACGCCGCCTTCAAGATGGAGGGCCATCTCAGAGGCATAATGATCCCGCAGAAGAAGACAGAAATGATGATTTATTTTCAGCCAGTGTTGCTAGAGCAGCCCAATCAATATCAAAGGCTGCACAAGCCCGCCCAACTACAAAGCTACTTGATTCGGAAGCTCTACCAAGGCTTGAGGCAGCCACCTATTCTTTCCAGAGGCTAAGGAAACCTCTGAAAATCCCCCAATCCCTTGAAAATGATACACAGAAGAACAAAAAATCAGGAACAAGAAGGAAGCGTCCTTTGCCTGAGAAGCGATGGAGAAATCGCATTTCTCTTGAGGAAATGAATTTGAACGGAAACGAGGTGAGCACCCCTAGGGAAGAAGAAAACCAGGAAGATACTGGAGATATAGATGATGATGAGTATCCTCATGTTACCCTTGAAGGGGGCTTGAAAATCCCTGAGTACATTTTTGAACAACTCTTTGACTATCAAAAAGTAGGGGTCCAGTGGCTCTGGGAATTGCATTGCCAAAAAGCAGGTGGAATCATTGGAGATGAGATGGGTCTTGGTAAAACCATCCAGGTCTTATCTTTCCTTGGTGCACTGCATTTCAGTCGTATGTACAAACCAAGCATTATTGTATGCCCGGTTACACTATTGCGACAATGGAGAAGGGAGGCTAAGAAATGGTACCCAAGCTTTCATGTGGAGTTACTTCATGATTCTGCTCAGGACTCAAGTAATAGAAAAAAACAATATAAATCTTCTGGAAGTGATTCTGATAGTGAAGGTTCACTGGATAGTGATTATGAGAGACCTGTATCATCCAAAGGTGCCAGAAAATGGGATGCCTTGATAAATCGTGTTTTGAGGTCAGAATCTGGGTTGCTTATTACAACTTATGAGCAACTTCGTATCGTTGGGGAAAAATTGCTGGACGTTGACTGGGGTTATGCAGTTTTGGATGAAGGACACCGAATTCGGAATCCAAACGCAGAAATTACTCTAGTTTGTAAACAGTTACAAACAGTACACCGTATTATCATGACGGGTGCCCCAATTCAGAACAAGCTGACTGAACTGTGGTCCTTGTTTGATTTTGTCTTCCCTGGAAAGTTGGGGGTTTTGCCCATATTTGAGGCTGAGTTTGCCGTTCCCATATCTGTTGGCGGTTATGCGAATGCTTCACCGTTACAAGTATCGACAGCTTACAGGTGTGCTGTGGTTCTGCGAGATCTGATCATGCCGTATCTCCTCCGGCGCATGAAGGCTGATGTGAATGCACATCTTCCTAAGAAGACTGAACATGTCATCTTTTGCAGCCTCACCACTGAGCAACGATCTGCATATAGAGCTTTTCTTGCCAGCTCTGATGTGGAACAGATTTTGGACGGCAATAGGAATTCACTTTATGGAATTGATGTGATGCGTAAAATTTGCAACCACCCTGATCTGCTTGAGAGGGAACATGCTGGCCAGAATCCTGATTATGGGAATCCTGAGCGCAGTGGGAAAATGAAAGTTATTGCCCAAGTTCTTAAAGCTTGGAAGGAGCAAGGTCATCGTGTTCTTCTATTTATGCAAACCCAACAAATGCTTGACATTATTGAAAGTTTTCTGGTCGCTGGTGAATATAGCTACAGAAGGATGGACGGTCTGACTGCCATCAAACACAGAATGGCCTTAATAGATGAATTTAACAACTCAAATGATGTGTTTATTTTCATCCTTACGACTAAAGTAGGAGGTCTAGGGACAAATTTGACAGGTGCAAATAGGGTGCTCATCTTTGACCCTGACTGGAACCCTTCAACTGACATGCAGGTATTTTTTCATATTTTTTCTTTTTGGCTTGATTATTCTTTCAATTTGAAGGTTGGATGCAGATGTTGGAATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001207 GO:0001208 GO:0003674 GO:0003824 GO:0006139 GO:0006259 GO:0006281 GO:0006283 GO:0006289 GO:0006325 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010767 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033554 GO:0034641 GO:0034644 GO:0034728 GO:0042623 GO:0043170 GO:0043618 GO:0043620 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0104004 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03420 map03420

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

863

Amino Acids

97.71

Weight (kDa)

5.67

Isoelectric Point (pI)

42.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	393 - 715	1.8e-78	SNF2-related domain
Helicase_C	PF00271	735 - 838	3e-19	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18760 AT2G18760 AT2G18760 AT2G18760 AT2G18760 AT2G18760 AT2G18760
fragaria_vesca	FvH4_2g21200 FvH4_2g21200 FvH4_2g21200 FvH4_2g21200 FvH4_2g21200 FvH4_2g21200
malus_domestica	MD05G1194600.v1.1
prunus_persica	Prupe.8G221300_v2.0.a1
pyrus_communis	pycom05g18190 pycom10g15720
rosa_chinensis	RchiOBHm_Chr6g0287701
rosa_laevigata	RLG00000012472
rosa_multiflora	Rmu_sc0003335.1_g000002 Rmu_sc0037270.1_g000001 Rmu_sc0037271.1_g000001
rosa_roxburghii	Rroxscaffold_7G00181080 Rroxscaffold_7G00181270
rosa_rugosa	Rorug06G0190800 Rorug06G0190900 Rorug06G0191000 Rorug06G0191100
rosa_samantha	Rh6AG301300 Rh6BG307000 Rh6CG302500 Rh6CG315200 Rh6DG298700
rosa_wichuraiana	Rw6G026000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1217
AasI	GACNNNNNNGTC	1 cut(s)	390
Acc36I	ACCTGC	2 cut(s)	1217, 2503
Acc65I	GGTACC	1 cut(s)	1380
AccB1I	GGYRCC	3 cut(s)	1380, 1523, 1742
AccB7I	CCANNNNNTGG	1 cut(s)	1533
AciI	CCGC	7 cut(s)	245, 276, 562, 709, 750, 832, 1860
AclWI	GGATC	3 cut(s)	173, 677, 740
AcoI	YGGCCR	4 cut(s)	51, 189, 372, 2164
AcsI	RAATTY	7 cut(s)	1033, 1668, 2092, 2124, 2384, 2449, 2584
AcuI	CTGAAG	2 cut(s)	344, 416
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	4 cut(s)	1154, 1313, 1382, 1722
AfiI	CCNNNNNNNGG	6 cut(s)	458, 627, 1131, 1132, 1533, 2180
AflIII	ACRYGT	1 cut(s)	1996
AjiI	CACGTC	1 cut(s)	48
AjnI	CCWGG	3 cut(s)	1077, 1269, 1798
Alw21I	GWGCWC	3 cut(s)	1058, 1294, 2475
Alw26I	GTCTC	2 cut(s)	580, 1498
Alw44I	GTGCAC	1 cut(s)	1290
AlwI	GGATC	3 cut(s)	173, 677, 740
AlwNI	CAGNNNCTG	1 cut(s)	1571
AoxI	GGCC	6 cut(s)	51, 189, 372, 725, 2164, 2370
ApaLI	GTGCAC	1 cut(s)	1290
ApeKI	GCWGC	5 cut(s)	617, 800, 821, 881, 2010
ApoI	RAATTY	7 cut(s)	1033, 1668, 2092, 2124, 2384, 2449, 2584
ArsI	GACNNNNNNTTYG	2 cut(s)	1653, 1685
Asp700I	GAANNNNTTC	3 cut(s)	657, 1465, 2304
Asp718I	GGTACC	1 cut(s)	1380
AspA2I	CCTAGG	1 cut(s)	1061
AspLEI	GCGC	2 cut(s)	1953, 2196
AspS9I	GGNCC	3 cut(s)	725, 1192, 1776
AsuC2I	CCSGG	1 cut(s)	1337
AsuHPI	GGTGA	7 cut(s)	125, 134, 314, 1063, 1869, 2008, 2330
AsuII	TTCGAA	1 cut(s)	661
AvaII	GGWCC	2 cut(s)	1192, 1776
AvrII	CCTAGG	1 cut(s)	1061
BaeGI	GKGCMC	2 cut(s)	1294, 1747
BalI	TGGCCA	3 cut(s)	191, 374, 2166
BanI	GGYRCC	3 cut(s)	1380, 1523, 1742
BbsI	GAAGAC	5 cut(s)	15, 21, 765, 1786, 1994
Bbv12I	GWGCWC	3 cut(s)	1058, 1294, 2475
BbvI	GCAGC	5 cut(s)	629, 808, 812, 893, 2022
BceAI	ACGGC	4 cut(s)	590, 1826, 1921, 2098
BcgI	CGANNNNNNTGC	4 cut(s)	1286, 1320, 2234, 2268
BciT130I	CCWGG	3 cut(s)	1079, 1271, 1800
BciVI	GTATCC	1 cut(s)	1122
BclI	TGATCA	1 cut(s)	1929
BcnI	CCSGG	1 cut(s)	1337
BcoDI	GTCTC	2 cut(s)	580, 1498
BfaI	CTAG	4 cut(s)	795, 1062, 1697, 2441
BfmI	CTRYAG	1 cut(s)	2329
BfuAI	ACCTGC	2 cut(s)	1217, 2503
BfuI	GTATCC	1 cut(s)	1122
BglII	AGATCT	1 cut(s)	1924
BisI	GCNGC	6 cut(s)	618, 709, 801, 822, 882, 2011
BlnI	CCTAGG	1 cut(s)	1061
BlpI	GCTNAGC	1 cut(s)	29
BlsI	GCNGC	6 cut(s)	619, 710, 802, 823, 883, 2012
Bme1390I	CCNGG	4 cut(s)	1079, 1271, 1337, 1800
Bme18I	GGWCC	2 cut(s)	1192, 1776
BmgBI	CACGTC	1 cut(s)	48
BmgT120I	GGNCC	3 cut(s)	725, 1192, 1776
BmiI	GGNNCC	5 cut(s)	1193, 1382, 1525, 1744, 2495
BmrFI	CCNGG	4 cut(s)	1079, 1271, 1337, 1800
BmrI	ACTGGG	1 cut(s)	1645
BmsI	GCATC	7 cut(s)	232, 260, 592, 604, 1528, 2106, 2561
BmuI	ACTGGG	1 cut(s)	1645
BpiI	GAAGAC	5 cut(s)	15, 21, 765, 1786, 1994
BpmI	CTGGAG	2 cut(s)	150, 1110
Bpu10I	CCTNAGC	3 cut(s)	905, 1419, 2190
Bpu1102I	GCTNAGC	1 cut(s)	29
Bpu14I	TTCGAA	1 cut(s)	661
BpuEI	CTTGAG	5 cut(s)	437, 896, 1043, 1411, 2168
BpuMI	CCSGG	1 cut(s)	1337
Bsa29I	ATCGAT	1 cut(s)	240
BsaBI	GATNNNNATC	1 cut(s)	1110
BsaHI	GRCGYC	1 cut(s)	42
BsaI	GGTCTC	1 cut(s)	1498
BsaJI	CCNNGG	5 cut(s)	186, 869, 1061, 1285, 1798
BsaWI	WCCGGW	1 cut(s)	166
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	6 cut(s)	458, 627, 1131, 1132, 1533, 2180
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	6 cut(s)	786, 1093, 1195, 1491, 1640, 2495
Bse3DI	GCAATG	3 cut(s)	112, 145, 1213
Bse8I	GATNNNNATC	1 cut(s)	1110
BseBI	CCWGG	3 cut(s)	1079, 1271, 1800
BseCI	ATCGAT	1 cut(s)	240
BseDI	CCNNGG	5 cut(s)	186, 869, 1061, 1285, 1798
BseJI	GATNNNNATC	1 cut(s)	1110
BseLI	CCNNNNNNNGG	6 cut(s)	458, 627, 1131, 1132, 1533, 2180
BseMI	GCAATG	3 cut(s)	112, 145, 1213
BseMII	CTCAG	9 cut(s)	20, 78, 746, 984, 1140, 1433, 1824, 2013, 2181
BseNI	ACTGG	6 cut(s)	786, 1093, 1195, 1491, 1640, 2495
BseRI	GAGGAG	4 cut(s)	158, 161, 164, 1934
BseSI	GKGCMC	2 cut(s)	1294, 1747
BseXI	GCAGC	5 cut(s)	629, 808, 812, 893, 2022
BsgI	GTGCAG	2 cut(s)	492, 807
BshFI	GGCC	6 cut(s)	53, 191, 374, 727, 2166, 2372
BshNI	GGYRCC	3 cut(s)	1380, 1523, 1742
BshVI	ATCGAT	1 cut(s)	240
BsiHKAI	GWGCWC	3 cut(s)	1058, 1294, 2475
BsiSI	CCGG	4 cut(s)	111, 167, 1337, 1948
BslFI	GGGAC	1 cut(s)	2458
BslI	CCNNNNNNNGG	6 cut(s)	458, 627, 1131, 1132, 1533, 2180
BsmAI	GTCTC	2 cut(s)	580, 1498
BsmFI	GGGAC	1 cut(s)	2458
BsmI	GAATGC	3 cut(s)	291, 1876, 1975
BsnI	GGCC	6 cut(s)	53, 191, 374, 727, 2166, 2372
Bso31I	GGTCTC	1 cut(s)	1498
Bsp119I	TTCGAA	1 cut(s)	661
Bsp1286I	GDGCHC	4 cut(s)	1058, 1294, 1747, 2475
Bsp1407I	TGTACA	1 cut(s)	1311
Bsp143I	GATC	7 cut(s)	178, 669, 745, 1924, 1929, 2030, 2140
Bsp1720I	GCTNAGC	1 cut(s)	29
BspACI	CCGC	7 cut(s)	245, 276, 562, 709, 750, 832, 1860
BspANI	GGCC	6 cut(s)	53, 191, 374, 727, 2166, 2372
BspCNI	CTCAG	9 cut(s)	21, 79, 745, 985, 1141, 1432, 1825, 2014, 2182
BspDI	ATCGAT	1 cut(s)	240
BspHI	TCATGA	2 cut(s)	1408, 1734
BspLI	GGNNCC	5 cut(s)	1193, 1382, 1525, 1744, 2495
BspMI	ACCTGC	2 cut(s)	1217, 2503
BspPI	GGATC	3 cut(s)	173, 677, 740
BspT104I	TTCGAA	1 cut(s)	661
BspT107I	GGYRCC	3 cut(s)	1380, 1523, 1742
BspTNI	GGTCTC	1 cut(s)	1498
BsrDI	GCAATG	3 cut(s)	112, 145, 1213
BsrFI	RCCGGY	1 cut(s)	110
BsrGI	TGTACA	1 cut(s)	1311
BsrI	ACTGG	6 cut(s)	786, 1093, 1195, 1491, 1640, 2495
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	5 cut(s)	186, 869, 1061, 1285, 1798
BssMI	GATC	7 cut(s)	178, 669, 745, 1924, 1929, 2030, 2140
BssNI	GRCGYC	1 cut(s)	42
BssT1I	CCWWGG	3 cut(s)	869, 1061, 1285
Bst2UI	CCWGG	3 cut(s)	1079, 1271, 1800
Bst4CI	ACNGT	8 cut(s)	259, 574, 1710, 1720, 1727, 1773, 1881, 2345
BstACI	GRCGYC	1 cut(s)	42
BstAUI	TGTACA	1 cut(s)	1311
BstBI	TTCGAA	1 cut(s)	661
BstC8I	GCNNGC	7 cut(s)	193, 366, 443, 507, 832, 2056, 2164
BstDSI	CCRYGG	1 cut(s)	186
BstHHI	GCGC	2 cut(s)	1953, 2196
BstKTI	GATC	7 cut(s)	181, 672, 748, 1927, 1932, 2033, 2143
BstMAI	GTCTC	2 cut(s)	580, 1498
BstMBI	GATC	7 cut(s)	178, 669, 745, 1924, 1929, 2030, 2140
BstNI	CCWGG	3 cut(s)	1079, 1271, 1800
BstNSI	RCATGY	4 cut(s)	368, 2000, 2162, 2512
BstSCI	CCNGG	4 cut(s)	1077, 1269, 1335, 1798
BstSFI	CTRYAG	1 cut(s)	2329
BstSLI	GKGCMC	2 cut(s)	1294, 1747
BstV1I	GCAGC	5 cut(s)	629, 808, 812, 893, 2022
BstV2I	GAAGAC	5 cut(s)	15, 21, 765, 1786, 1994
BstX2I	RGATCY	2 cut(s)	669, 1924
BstYI	RGATCY	2 cut(s)	669, 1924
Bsu15I	ATCGAT	1 cut(s)	240
BsuI	GTATCC	1 cut(s)	1122
BsuRI	GGCC	6 cut(s)	53, 191, 374, 727, 2166, 2372
BsuTUI	ATCGAT	1 cut(s)	240
BtgI	CCRYGG	1 cut(s)	186
BtgZI	GCGATG	1 cut(s)	1015
BtrI	CACGTC	1 cut(s)	48
BtsI	GCAGTG	2 cut(s)	1292, 2203
BtsIMutI	CAGTG	8 cut(s)	255, 375, 793, 1202, 1292, 1484, 2019, 2203
BveI	ACCTGC	2 cut(s)	1217, 2503
Cac8I	GCNNGC	7 cut(s)	193, 366, 443, 507, 832, 2056, 2164
CaiI	CAGNNNCTG	1 cut(s)	1571
CciI	TCATGA	2 cut(s)	1408, 1734
CfoI	GCGC	2 cut(s)	1953, 2196
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	3 cut(s)	725, 1192, 1776
ClaI	ATCGAT	1 cut(s)	240
CseI	GACGC	2 cut(s)	31, 971
Csp6I	GTAC	4 cut(s)	1153, 1312, 1381, 1721
CspCI	CAANNNNNGTGG	2 cut(s)	613, 648
CviQI	GTAC	4 cut(s)	1153, 1312, 1381, 1721
DpnI	GATC	7 cut(s)	180, 671, 747, 1926, 1931, 2032, 2142
DpnII	GATC	7 cut(s)	178, 669, 745, 1924, 1929, 2030, 2140
DrdI	GACNNNNNNGTC	1 cut(s)	390
DseDI	GACNNNNNNGTC	1 cut(s)	390
EaeI	YGGCCR	4 cut(s)	51, 189, 372, 2164
Eco130I	CCWWGG	3 cut(s)	869, 1061, 1285
Eco31I	GGTCTC	1 cut(s)	1498
Eco47I	GGWCC	2 cut(s)	1192, 1776
Eco57I	CTGAAG	2 cut(s)	344, 416
EcoRI	GAATTC	2 cut(s)	1668, 2092
EcoRII	CCWGG	3 cut(s)	1077, 1269, 1798
EcoT14I	CCWWGG	3 cut(s)	869, 1061, 1285
ErhI	CCWWGG	3 cut(s)	869, 1061, 1285
FaqI	GGGAC	1 cut(s)	2458
FauI	CCCGC	4 cut(s)	269, 555, 757, 839
FbaI	TGATCA	1 cut(s)	1929
Fnu4HI	GCNGC	6 cut(s)	618, 709, 801, 822, 882, 2011
Fsp4HI	GCNGC	6 cut(s)	618, 709, 801, 822, 882, 2011
FspBI	CTAG	4 cut(s)	795, 1062, 1697, 2441
GlaI	GCGC	2 cut(s)	1952, 2195
GluI	GCNGC	6 cut(s)	618, 709, 801, 822, 882, 2011
GsuI	CTGGAG	2 cut(s)	150, 1110
HaeIII	GGCC	6 cut(s)	53, 191, 374, 727, 2166, 2372
HapII	CCGG	4 cut(s)	111, 167, 1337, 1948
HgaI	GACGC	2 cut(s)	31, 971
HhaI	GCGC	2 cut(s)	1953, 2196
Hin1I	GRCGYC	1 cut(s)	42
Hin6I	GCGC	2 cut(s)	1951, 2194
HinP1I	GCGC	2 cut(s)	1951, 2194
HincII	GTYRAC	1 cut(s)	1633
HindII	GTYRAC	1 cut(s)	1633
HindIII	AAGCTT	2 cut(s)	1387, 2232
HpaII	CCGG	4 cut(s)	111, 167, 1337, 1948
HphI	GGTGA	7 cut(s)	125, 134, 314, 1063, 1869, 2008, 2330
Hpy166II	GTNNAC	5 cut(s)	1292, 1484, 1633, 1706, 1723
Hpy8I	GTNNAC	5 cut(s)	1292, 1484, 1633, 1706, 1723
Hpy99I	CGWCG	1 cut(s)	52
HpyCH4III	ACNGT	8 cut(s)	259, 574, 1710, 1720, 1727, 1773, 1881, 2345
HpyCH4IV	ACGT	2 cut(s)	47, 1629
HpySE526I	ACGT	2 cut(s)	47, 1629
Hsp92I	GRCGYC	1 cut(s)	42
HspAI	GCGC	2 cut(s)	1951, 2194
KpnI	GGTACC	1 cut(s)	1384
Ksp22I	TGATCA	1 cut(s)	1929
Kzo9I	GATC	7 cut(s)	178, 669, 745, 1924, 1929, 2030, 2140
LmnI	GCTCC	2 cut(s)	135, 2242
Lsp1109I	GCAGC	5 cut(s)	629, 808, 812, 893, 2022
LweI	GCATC	7 cut(s)	232, 260, 592, 604, 1528, 2106, 2561
MaeI	CTAG	4 cut(s)	795, 1062, 1697, 2441
MaeII	ACGT	2 cut(s)	47, 1629
MaeIII	GTNAC	7 cut(s)	43, 113, 1120, 1339, 1401, 1710, 1881
MalI	GATC	7 cut(s)	180, 671, 747, 1926, 1931, 2032, 2142
MboI	GATC	7 cut(s)	178, 669, 745, 1924, 1929, 2030, 2140
MflI	RGATCY	2 cut(s)	669, 1924
MhlI	GDGCHC	4 cut(s)	1058, 1294, 1747, 2475
MlsI	TGGCCA	3 cut(s)	191, 374, 2166
MluNI	TGGCCA	3 cut(s)	191, 374, 2166
MlyI	GAGTC	3 cut(s)	400, 486, 1418
MmeI	TCCRAC	3 cut(s)	591, 2548, 2561
Mox20I	TGGCCA	3 cut(s)	191, 374, 2166
MroXI	GAANNNNTTC	3 cut(s)	657, 1465, 2304
MscI	TGGCCA	3 cut(s)	191, 374, 2166
MseI	TTAA	6 cut(s)	93, 567, 674, 2229, 2375, 2388
Msp20I	TGGCCA	3 cut(s)	191, 374, 2166
MspI	CCGG	4 cut(s)	111, 167, 1337, 1948
MspR9I	CCNGG	4 cut(s)	1079, 1271, 1337, 1800
Mva1269I	GAATGC	3 cut(s)	291, 1876, 1975
MvaI	CCWGG	3 cut(s)	1079, 1271, 1800
NciI	CCSGG	1 cut(s)	1337
NdeII	GATC	7 cut(s)	178, 669, 745, 1924, 1929, 2030, 2140
NlaIV	GGNNCC	5 cut(s)	1193, 1382, 1525, 1744, 2495
NmuCI	GTSAC	2 cut(s)	43, 113
NspI	RCATGY	4 cut(s)	368, 2000, 2162, 2512
NspV	TTCGAA	1 cut(s)	661
PaeI	GCATGC	1 cut(s)	368
PagI	TCATGA	2 cut(s)	1408, 1734
PaqCI	CACCTGC	1 cut(s)	1217
PciI	ACATGT	1 cut(s)	1996
PctI	GAATGC	3 cut(s)	291, 1876, 1975
PdmI	GAANNNNTTC	3 cut(s)	657, 1465, 2304
PfeI	GAWTC	8 cut(s)	854, 1233, 1412, 1466, 1568, 1675, 2170, 2185
PflFI	GACNNNGTC	1 cut(s)	476
PflMI	CCANNNNNTGG	1 cut(s)	1533
PkrI	GCNGC	6 cut(s)	619, 710, 802, 823, 883, 2012
PleI	GAGTC	3 cut(s)	399, 485, 1418
PpsI	GAGTC	3 cut(s)	399, 485, 1418
PscI	ACATGT	1 cut(s)	1996
Psp6I	CCWGG	3 cut(s)	1077, 1269, 1798
PspGI	CCWGG	3 cut(s)	1077, 1269, 1798
PspN4I	GGNNCC	5 cut(s)	1193, 1382, 1525, 1744, 2495
PspPI	GGNCC	3 cut(s)	725, 1192, 1776
PstNI	CAGNNNCTG	1 cut(s)	1571
PsuI	RGATCY	2 cut(s)	669, 1924
PsyI	GACNNNGTC	1 cut(s)	476
RsaI	GTAC	4 cut(s)	1154, 1313, 1382, 1722
RsaNI	GTAC	4 cut(s)	1153, 1312, 1381, 1721
SaqAI	TTAA	6 cut(s)	93, 567, 674, 2229, 2375, 2388
SatI	GCNGC	6 cut(s)	618, 709, 801, 822, 882, 2011
Sau3AI	GATC	7 cut(s)	178, 669, 745, 1924, 1929, 2030, 2140
Sau96I	GGNCC	3 cut(s)	725, 1192, 1776
SchI	GAGTC	3 cut(s)	400, 486, 1418
ScrFI	CCNGG	4 cut(s)	1079, 1271, 1337, 1800
SduI	GDGCHC	4 cut(s)	1058, 1294, 1747, 2475
SfaNI	GCATC	7 cut(s)	232, 260, 592, 604, 1528, 2106, 2561
SfcI	CTRYAG	1 cut(s)	2329
SfuI	TTCGAA	1 cut(s)	661
SinI	GGWCC	2 cut(s)	1192, 1776
SmlI	CTYRAG	5 cut(s)	416, 875, 1022, 1426, 2147
SmoI	CTYRAG	5 cut(s)	416, 875, 1022, 1426, 2147
SphI	GCATGC	1 cut(s)	368
SsiI	CCGC	7 cut(s)	245, 276, 562, 709, 750, 832, 1860
SspI	AATATT	1 cut(s)	490
SspMI	CTAG	4 cut(s)	795, 1062, 1697, 2441
StyD4I	CCNGG	4 cut(s)	1077, 1269, 1335, 1798
StyI	CCWWGG	3 cut(s)	869, 1061, 1285
TaaI	ACNGT	8 cut(s)	259, 574, 1710, 1720, 1727, 1773, 1881, 2345
TaiI	ACGT	2 cut(s)	50, 1632
TaqI	TCGA	4 cut(s)	240, 261, 661, 1892
TatI	WGTACW	3 cut(s)	1152, 1311, 1720
TauI	GCSGC	1 cut(s)	711
TfiI	GAWTC	8 cut(s)	854, 1233, 1412, 1466, 1568, 1675, 2170, 2185
Tru1I	TTAA	6 cut(s)	93, 567, 674, 2229, 2375, 2388
Tru9I	TTAA	6 cut(s)	93, 567, 674, 2229, 2375, 2388
TscAI	CASTG	8 cut(s)	262, 382, 793, 1202, 1299, 1491, 2026, 2203
TseFI	GTSAC	2 cut(s)	43, 113
TseI	GCWGC	5 cut(s)	617, 800, 821, 881, 2010
Tsp45I	GTSAC	2 cut(s)	43, 113
TspGWI	ACGGA	4 cut(s)	175, 403, 656, 1056
TspRI	CASTG	8 cut(s)	262, 382, 793, 1202, 1299, 1491, 2026, 2203
Tth111I	GACNNNGTC	1 cut(s)	476
Van91I	CCANNNNNTGG	1 cut(s)	1533
VneI	GTGCAC	1 cut(s)	1290
VpaK11BI	GGWCC	2 cut(s)	1192, 1776
XapI	RAATTY	7 cut(s)	1033, 1668, 2092, 2124, 2384, 2449, 2584
XceI	RCATGY	4 cut(s)	368, 2000, 2162, 2512
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1085, 1226, 2062
XmaJI	CCTAGG	1 cut(s)	1061
XmnI	GAANNNNTTC	3 cut(s)	657, 1465, 2304
XspI	CTAG	4 cut(s)	795, 1062, 1697, 2441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.