Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003906

Physical Location & Seq

Genomic Coordinates Forward (+)

30581002 .. 30581535

Gene Structure 534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0190900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGGCGAAAAGGGTAAATTTGGTGCCAAGCCAAGATCGGCGGGTACCATAGTCATGGGTGATGATGTTCGGTGGTGTTTATGTGATGGGACTCCTATTGACCAGGCTGGCGATAGCATGATTGAGGGCAAGATCCGAGAATTTAGAAGAAATAGGAGGATCCCAGATGAGGTAGAGTTGTGCCCCTTGCAAGATGGGGAGATGGCAAGTCACCCTGAAGAGGGTTGTATCGCCGTGTATGATTACCACTTTACGTGTGGGCTGTCGCTACCGCTACCAGGTTGGTTGCAGTATATTTTGTTCTGCCTTAATCTCGATATCAATCAGGTGTCGCCTAACACTCTCAGGCAACTGTTGGGAACTGTTGTGCTTTGGAGTGTCACCAATGGGAAATTTCCCACTCATCATGAGATCAGCGCCTGTTACAAGTTGCCGTATTTCACTAAGAAAGGCGACAATGGGTATGTCACCATGAAGGCTGGAAAGTATGGTGCCATTGTGGAGGGGTTATTGTCCTCCGTGAATTTCTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001207 GO:0001208 GO:0003674 GO:0003824 GO:0006139 GO:0006259 GO:0006281 GO:0006283 GO:0006289 GO:0006325 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010767 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033554 GO:0034641 GO:0034644 GO:0034728 GO:0042623 GO:0043170 GO:0043618 GO:0043620 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0104004 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03420 map03420

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

177

Amino Acids

19.64

Weight (kDa)

6.07

Isoelectric Point (pI)

40.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18760 AT2G18760 AT2G18760 AT2G18760 AT2G18760 AT2G18760 AT2G18760
fragaria_vesca	FvH4_2g21200 FvH4_2g21200 FvH4_2g21200 FvH4_2g21200 FvH4_2g21200 FvH4_2g21200
malus_domestica	MD05G1194600.v1.1
prunus_persica	Prupe.8G221300_v2.0.a1
pyrus_communis	pycom05g18190 pycom10g15720
rosa_chinensis	RchiOBHm_Chr6g0287701
rosa_laevigata	RLG00000012472
rosa_multiflora	Rmu_sc0003335.1_g000002 Rmu_sc0037270.1_g000001 Rmu_sc0037271.1_g000001
rosa_roxburghii	Rroxscaffold_7G00181080 Rroxscaffold_7G00181270
rosa_rugosa	Rorug06G0190800 Rorug06G0190900 Rorug06G0191000 Rorug06G0191100
rosa_samantha	Rh6AG301300 Rh6BG307000 Rh6CG302500 Rh6CG315200 Rh6DG298700
rosa_wichuraiana	Rw6G026000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	44
AccB1I	GGYRCC	3 cut(s)	23, 44, 491
AciI	CCGC	2 cut(s)	41, 272
AclWI	GGATC	3 cut(s)	127, 154, 167
AcsI	RAATTY	4 cut(s)	17, 140, 392, 523
AcuI	CTGAAG	1 cut(s)	237
AfaI	GTAC	1 cut(s)	46
AfiI	CCNNNNNNNGG	4 cut(s)	169, 220, 221, 278
AflIII	ACRYGT	1 cut(s)	254
AjnI	CCWGG	2 cut(s)	102, 277
AlwI	GGATC	3 cut(s)	127, 154, 167
AlwNI	CAGNNNCTG	1 cut(s)	420
ApoI	RAATTY	4 cut(s)	17, 140, 392, 523
Asp718I	GGTACC	1 cut(s)	44
AspLEI	GCGC	1 cut(s)	419
AsuHPI	GGTGA	4 cut(s)	71, 203, 373, 460
BaeGI	GKGCMC	1 cut(s)	185
BaeI	ACNNNNGTAYC	2 cut(s)	36, 69
BamHI	GGATCC	1 cut(s)	159
BanI	GGYRCC	3 cut(s)	23, 44, 491
BccI	CCATC	3 cut(s)	80, 188, 196
BceAI	ACGGC	2 cut(s)	218, 418
BciT130I	CCWGG	2 cut(s)	104, 279
BfoI	RGCGCY	1 cut(s)	420
Bme1390I	CCNGG	2 cut(s)	104, 279
BmiI	GGNNCC	4 cut(s)	25, 46, 161, 493
BmrFI	CCNGG	2 cut(s)	104, 279
BsaAI	YACGTR	1 cut(s)	255
BsaBI	GATNNNNATC	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	4 cut(s)	169, 220, 221, 278
Bse8I	GATNNNNATC	1 cut(s)	321
BseBI	CCWGG	2 cut(s)	104, 279
BseJI	GATNNNNATC	1 cut(s)	321
BseLI	CCNNNNNNNGG	4 cut(s)	169, 220, 221, 278
BseMII	CTCAG	1 cut(s)	358
BseSI	GKGCMC	1 cut(s)	185
BshNI	GGYRCC	3 cut(s)	23, 44, 491
BslFI	GGGAC	1 cut(s)	103
BslI	CCNNNNNNNGG	4 cut(s)	169, 220, 221, 278
BsmFI	GGGAC	1 cut(s)	103
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp143I	GATC	4 cut(s)	35, 132, 159, 411
BspACI	CCGC	2 cut(s)	41, 272
BspCNI	CTCAG	1 cut(s)	357
BspHI	TCATGA	1 cut(s)	406
BspLI	GGNNCC	4 cut(s)	25, 46, 161, 493
BspPI	GGATC	3 cut(s)	127, 154, 167
BspT107I	GGYRCC	3 cut(s)	23, 44, 491
BssMI	GATC	4 cut(s)	35, 132, 159, 411
Bst2UI	CCWGG	2 cut(s)	104, 279
Bst4CI	ACNGT	2 cut(s)	354, 364
Bst6I	CTCTTC	1 cut(s)	213
BstBAI	YACGTR	1 cut(s)	255
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	2 cut(s)	344, 444
BstH2I	RGCGCY	1 cut(s)	420
BstHHI	GCGC	1 cut(s)	419
BstKTI	GATC	4 cut(s)	38, 135, 162, 414
BstMBI	GATC	4 cut(s)	35, 132, 159, 411
BstNI	CCWGG	2 cut(s)	104, 279
BstSCI	CCNGG	2 cut(s)	102, 277
BstSLI	GKGCMC	1 cut(s)	185
BstX2I	RGATCY	2 cut(s)	132, 159
BstXI	CCANNNNNNTGG	1 cut(s)	55
BstYI	RGATCY	2 cut(s)	132, 159
Cac8I	GCNNGC	1 cut(s)	109
CaiI	CAGNNNCTG	1 cut(s)	420
CciI	TCATGA	1 cut(s)	406
CfoI	GCGC	1 cut(s)	419
CsiI	ACCWGGT	1 cut(s)	277
Csp6I	GTAC	1 cut(s)	45
CviAII	CATG	4 cut(s)	55, 118, 407, 472
CviJI	RGCY	4 cut(s)	31, 107, 262, 479
CviKI_1	RGCY	4 cut(s)	31, 107, 262, 479
CviQI	GTAC	1 cut(s)	45
DdeI	CTNAG	2 cut(s)	344, 444
DpnI	GATC	4 cut(s)	37, 134, 161, 413
DpnII	GATC	4 cut(s)	35, 132, 159, 411
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Eco32I	GATATC	1 cut(s)	319
Eco57I	CTGAAG	1 cut(s)	237
EcoRII	CCWGG	2 cut(s)	102, 277
EcoRV	GATATC	1 cut(s)	319
FaeI	CATG	4 cut(s)	58, 121, 410, 475
FaqI	GGGAC	1 cut(s)	103
FatI	CATG	4 cut(s)	54, 117, 406, 471
FauI	CCCGC	1 cut(s)	34
GlaI	GCGC	1 cut(s)	418
HaeII	RGCGCY	1 cut(s)	420
HhaI	GCGC	1 cut(s)	419
Hin1II	CATG	4 cut(s)	58, 121, 410, 475
Hin6I	GCGC	1 cut(s)	417
HinP1I	GCGC	1 cut(s)	417
HinfI	GANTC	1 cut(s)	91
HphI	GGTGA	4 cut(s)	71, 203, 373, 460
Hpy188I	TCNGA	1 cut(s)	137
Hpy188III	TCNNGA	2 cut(s)	314, 407
HpyAV	CCTTC	1 cut(s)	469
HpyCH4III	ACNGT	2 cut(s)	354, 364
HpyCH4IV	ACGT	1 cut(s)	254
HpyCH4V	TGCA	2 cut(s)	190, 289
HpyF3I	CTNAG	2 cut(s)	344, 444
HpySE526I	ACGT	1 cut(s)	254
Hsp92II	CATG	4 cut(s)	58, 121, 410, 475
HspAI	GCGC	1 cut(s)	417
KpnI	GGTACC	1 cut(s)	48
Kzo9I	GATC	4 cut(s)	35, 132, 159, 411
MabI	ACCWGGT	1 cut(s)	277
MaeII	ACGT	1 cut(s)	254
MaeIII	GTNAC	4 cut(s)	209, 379, 422, 466
MalI	GATC	4 cut(s)	37, 134, 161, 413
MboI	GATC	4 cut(s)	35, 132, 159, 411
MboII	GAAGA	2 cut(s)	159, 230
MflI	RGATCY	2 cut(s)	132, 159
MhlI	GDGCHC	1 cut(s)	185
MluCI	AATT	4 cut(s)	17, 140, 392, 523
MlyI	GAGTC	1 cut(s)	85
MnlI	CCTC	6 cut(s)	118, 150, 163, 214, 496, 526
MseI	TTAA	1 cut(s)	309
MslI	CAYNNNNRTG	1 cut(s)	53
MspR9I	CCNGG	2 cut(s)	104, 279
MvaI	CCWGG	2 cut(s)	104, 279
NdeII	GATC	4 cut(s)	35, 132, 159, 411
NlaIII	CATG	4 cut(s)	58, 121, 410, 475
NlaIV	GGNNCC	4 cut(s)	25, 46, 161, 493
NmuCI	GTSAC	3 cut(s)	209, 379, 466
PagI	TCATGA	1 cut(s)	406
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
Ppu21I	YACGTR	1 cut(s)	255
Psp6I	CCWGG	2 cut(s)	102, 277
PspGI	CCWGG	2 cut(s)	102, 277
PspN4I	GGNNCC	4 cut(s)	25, 46, 161, 493
PsrI	GAACNNNNNNTAC	2 cut(s)	284, 316
PstNI	CAGNNNCTG	1 cut(s)	420
PsuI	RGATCY	2 cut(s)	132, 159
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
RseI	CAYNNNNRTG	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	309
Sau3AI	GATC	4 cut(s)	35, 132, 159, 411
SchI	GAGTC	1 cut(s)	85
ScrFI	CCNGG	2 cut(s)	104, 279
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	4 cut(s)	174, 257, 283, 330
SexAI	ACCWGGT	1 cut(s)	277
SmiMI	CAYNNNNRTG	1 cut(s)	53
Sse9I	AATT	4 cut(s)	17, 140, 392, 523
SsiI	CCGC	2 cut(s)	41, 272
StyD4I	CCNGG	2 cut(s)	102, 277
TaaI	ACNGT	2 cut(s)	354, 364
TaiI	ACGT	1 cut(s)	257
TaqI	TCGA	1 cut(s)	315
TasI	AATT	4 cut(s)	17, 140, 392, 523
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TseFI	GTSAC	3 cut(s)	209, 379, 466
Tsp45I	GTSAC	3 cut(s)	209, 379, 466
TspDTI	ATGAA	1 cut(s)	488
TspGWI	ACGGA	1 cut(s)	508
XapI	RAATTY	4 cut(s)	17, 140, 392, 523
XcmI	CCANNNNNNNNNTGG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.