Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003906

Physical Location & Seq

Genomic Coordinates Forward (+)

50002376 .. 50008416

Gene Structure 6041 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG301300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3138 bp

ATGGAGGAAGACGAAGATAGGATTTTGCTGAGCAGTTTGGGCGTCACGTCGGCCAATCCCGAAGATATTGAGAGGGACATTTTATCTGAGGCTAAGAATAATGGCAATGCCGGTAACATTGGTGAGGCTGGAGGGAGCAATGAGGAGGAGGAGGAGTTGGGGGAGAAACTGGAGAGTGTTGATCCATCCGCGGCCAGCCACGCCAAACTCTATAACAAATTGAGGGCAGTTGAGTTTGAAATCGATGCGGTGGCATCCACTGTCGAGCATGAACAAGGTGGGAATGAAGATGGCATTGGTGATGGTGATGATGGCGAGGAACGGGGGGATAAGGAGGATGATGTTGAGGCTTCTGGTAACCTTCAGCATGCTTTGGCCACTGATAGACTACGGAGTCTGAAGAAAACAAAGGCTCAACTTGAGAAAGAGCTTTCGGACTTGGGTAAGCAAAGACCTTCTAAGGGTGTTGAGCTTGACAGAGTCTTGTCTAATATTGTCAAGGAAAAGCCTGCACCCAAGAGGAAGTTGAAACAGGTTCAGAAGTCTGGCAAAAAACAAGAAAAGCGGGTTAAAACAGTCTCATTTGATGAGGATGATGATTTTGATGCCGTGTTGGATGCAGCCTCCACGGGGTTTGTTGAAACGGAAAGAGATGAATTAGTTCGAAAAGGGATCTTAACTCCTTTCCATAAACTAAAGGGCTTTGAACGCCGCCTTCAAGATGGAGGGCCATCTCAGAGGCATAATGATCCCGCAGAAGAAGACAGAAATGATGATTTGTTTTCAGCCAGTGTTGCTAGAGCAGCCCAATCAATATCAAAGGCTGCACAAGCCCGCCCAACTACAAAGCTGCTTGATTCGGAAGCTCTACCAAGGCTTGAGGCAGCCACCTATCCTTTCCAGAGGCTAAGGAAACCTCTGAAAATCCCCCAATCCCTTGAAAATGATACACAGAAGAACAAAAAAACAGGAACAAGAAGGAAGCGTCCTTTGCCTGAGAAGCGATGGAGAAATCGCATTTCTCTTGAGGAAATGAATTTGAACGGAAACGAGGTGAGCACCCCCAGGGAAGAAGAAAACCAGGAAGATACTGTTGATGTAGATGATGATGAGTATCCTCATGTTACCCTTGAAGGGGGCTTGAAAATCCCTGAGTACATTTTTGAACAACTCTTTGACTATCAAAAAGTAGGGGTCCAGTGGCTCTGGGAATTGCATTGCCAAAAAGCAGGTGGAATCATTGGAGATGAGATGGGTCTTGGTAAAACCATCCAGGTCTTATCTTTCCTTGGTGCACTGCATTTCAGTCGTATGTACAAACCAAGCATTATTGTATGCCCAGTTACACTATTGCGACAATGGAGGAGGGAGGCTAAGAAATGGTACCCAAGCTTTCATGTGGAGTTACTTCATGATTCTGCTCAGGACTCAAGTAATAGAAAAAAGCAATATAAATCTTCTGGAAGTGATTCTGATAGTGAAGGTTCACTGGATAGTGATTATGAGAGACCTGTATCATCCAAAGGTGTCAAAAAATGGGATGCCTTGATAAATCGTGTTTTGAGGTCAGAATCTGGGTTGCTTATTACAACTTATGAGCAACTTCGTATCGTTGGGGAAAAATTGCTAGACGTTGACTGGGGTTATGCAGTTTTGGATGAAGGACACCGAATTCGGAATCCAAATGCAGAAATTACTCTAGTTTGTAAACAGTTACAAACAGTACACCGTATTATCATGACGGGTGCCCCAATTCAGAACAAGCTGACTGAACTGTGGTCCTTGTTTGATTTTGTCTTCCCTGGAAAGTTGGGGGTTTTGCCCATATTTGAGGCTGAGTTTGCCGTTCCCATATCTGTTGGTGGTTATGCGAATGCTTCACCGTTACAAGTATCGACAGCTTACAGGTGTGCTGTGGTTCTGCGAGATCTGATCATGCCGTATCTCCTCCGGCGCATGAAGGCTGATGTGAATGCACATCTTCCTAAGAAGACTGAACATGTCATCTTTTGCAGCCTCACCACTGAGCAACGATCTGCATATAGAGCTTTTCTTGCCAGCTCTGATGTGGAACAGATTTTGGACGGCAATAGGAATTCACTTTATGGAATTGATGTGATGCGTAAAATTTGCAACCACCCTGATCTGCTTGAGAGGGAACATGCTGGCCAGAATCCTGATTATGGGAATCCTGAGCGCAGTGGGAAAATGAAAGTTATTGCCCAAGTTCTTAAAGCTTGGAAGGAGCAAGGTCATCGTGTTCTTCTATTTACTCAAACCCAACAAATGCTTGACATTATTGAAAGTTTTCTGGTCGCTGGTGAATATAGCTACAGAAGGATGGACGGTCTGACTGCCATCAAACACAGAATGGCCTTAATAGATGAATTTAACAACTCAAATGATGTGTTTATTTTCATCCTTACGACTAAAGTAGGAGGTCTAGGGACAAATTTGACAGGTGCAAATAGGGTGCTCATCTTTGACCCTGACTGGAACCCTTCAACTGACATGCAGGCCAGGGAGCGTGCTTGGCGTATTGGTCAGAAGCGGGACGTAACTATATATAGATTGATTACTCGTGGAACTATAGAAGAGAAGGTGTATCATAGACAGATTTACAAACATTTTCTCACGAATAAGATATTGAAAAACCCCCAGCAGAGAAGGTTCTTTAAAGCTCGAGATATGAAGGATCTCTTCATTCTGAATGATGAGGGAGACAGTGGGGCTACTGAAACAGCTAATATATTTGGGCAGTTATCTGAAGATGCCAATGTTGTTTGTGCTCAGAAAGATGACCACAGTACGCGAGAGTCTAAGAAAGTTACTGTACCATATACCAATGCTTCTGCTGGCAAAAGAAGGAACTCTGAGATTGAATCATCAAGGAGAAATGGAAAAGAAAAAGCTGATCACAGTGAGGGCGATGTGGACGAAGAAACAAATATTCTGAAGTGTCTTTTTGACACGCAAGGGATCCATGTAAGTTTCTTCTCTGTGCTTCTATATACATATCGTTCAATTATAATATTTGCCTATTTGGATGTATTTGTTAACTGTGGTACGTATTGTGAGGTGAGATTGTCATTATTTCTTTACGAAATAGTCCAGAAGTTGTTTAGTTGTCTTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001207 GO:0001208 GO:0003674 GO:0003824 GO:0006139 GO:0006259 GO:0006281 GO:0006283 GO:0006289 GO:0006325 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010767 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033554 GO:0034641 GO:0034644 GO:0034728 GO:0042623 GO:0043170 GO:0043618 GO:0043620 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0104004 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03420 map03420

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

1045

Amino Acids

118.4

Weight (kDa)

5.88

Isoelectric Point (pI)

43.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	394 - 716	2.6e-78	SNF2-related domain
Helicase_C	PF00271	736 - 848	1.2e-23	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18760 AT2G18760 AT2G18760 AT2G18760 AT2G18760 AT2G18760 AT2G18760
fragaria_vesca	FvH4_2g21200 FvH4_2g21200 FvH4_2g21200 FvH4_2g21200 FvH4_2g21200 FvH4_2g21200
malus_domestica	MD05G1194600.v1.1
prunus_persica	Prupe.8G221300_v2.0.a1
pyrus_communis	pycom05g18190 pycom10g15720
rosa_chinensis	RchiOBHm_Chr6g0287701
rosa_laevigata	RLG00000012472
rosa_multiflora	Rmu_sc0003335.1_g000002 Rmu_sc0037270.1_g000001 Rmu_sc0037271.1_g000001
rosa_roxburghii	Rroxscaffold_7G00181080 Rroxscaffold_7G00181270
rosa_rugosa	Rorug06G0190800 Rorug06G0190900 Rorug06G0191000 Rorug06G0191100
rosa_samantha	Rh6AG301300 Rh6BG307000 Rh6CG302500 Rh6CG315200 Rh6DG298700
rosa_wichuraiana	Rw6G026000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3029
AarI	CACCTGC	1 cut(s)	1220
AasI	GACNNNNNNGTC	1 cut(s)	393
Acc36I	ACCTGC	1 cut(s)	1220
Acc65I	GGTACC	1 cut(s)	1383
AccB1I	GGYRCC	2 cut(s)	1383, 1745
AccII	CGCG	2 cut(s)	191, 2812
AciI	CCGC	8 cut(s)	189, 191, 248, 565, 712, 753, 835, 2551
AclWI	GGATC	6 cut(s)	176, 680, 743, 2703, 2974, 2987
AcoI	YGGCCR	4 cut(s)	51, 192, 375, 2167
AcsI	RAATTY	6 cut(s)	1036, 1671, 2095, 2127, 2387, 2452
AcuI	CTGAAG	5 cut(s)	347, 419, 2787, 2975, 3116
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	7 cut(s)	1157, 1316, 1385, 1725, 2809, 2835, 3067
AfiI	CCNNNNNNNGG	5 cut(s)	461, 630, 1134, 1135, 2183
AflIII	ACRYGT	1 cut(s)	1999
AjiI	CACGTC	1 cut(s)	48
AjnI	CCWGG	5 cut(s)	1064, 1080, 1272, 1801, 2519
AjuI	GAANNNNNNNTTGG	2 cut(s)	279, 311
Alw21I	GWGCWC	4 cut(s)	1061, 1297, 2478, 2791
Alw26I	GTCTC	3 cut(s)	583, 1501, 2715
Alw44I	GTGCAC	1 cut(s)	1293
AlwI	GGATC	6 cut(s)	176, 680, 743, 2703, 2974, 2987
AlwNI	CAGNNNCTG	1 cut(s)	1574
Ama87I	CYCGRG	1 cut(s)	2682
AoxI	GGCC	7 cut(s)	51, 192, 375, 728, 2167, 2373, 2517
ApaLI	GTGCAC	1 cut(s)	1293
ApeKI	GCWGC	6 cut(s)	620, 803, 824, 850, 884, 2013
ApoI	RAATTY	6 cut(s)	1036, 1671, 2095, 2127, 2387, 2452
ArsI	GACNNNNNNTTYG	2 cut(s)	1656, 1688
Asp700I	GAANNNNTTC	3 cut(s)	660, 1468, 2307
Asp718I	GGTACC	1 cut(s)	1383
AspLEI	GCGC	2 cut(s)	1956, 2199
AspS9I	GGNCC	3 cut(s)	728, 1195, 1779
AsuHPI	GGTGA	8 cut(s)	134, 311, 317, 1066, 1872, 2011, 2333, 3091
AsuII	TTCGAA	1 cut(s)	664
AvaI	CYCGRG	1 cut(s)	2682
AvaII	GGWCC	2 cut(s)	1195, 1779
BaeGI	GKGCMC	2 cut(s)	1297, 1750
BalI	TGGCCA	2 cut(s)	377, 2169
BamHI	GGATCC	1 cut(s)	2979
BanI	GGYRCC	2 cut(s)	1383, 1745
BauI	CACGAG	1 cut(s)	2580
BbsI	GAAGAC	5 cut(s)	15, 768, 1789, 1997, 3122
Bbv12I	GWGCWC	4 cut(s)	1061, 1297, 2478, 2791
BbvI	GCAGC	6 cut(s)	632, 811, 815, 837, 896, 2025
BceAI	ACGGC	4 cut(s)	593, 1829, 1924, 2101
BcgI	CGANNNNNNTGC	4 cut(s)	1289, 1323, 2237, 2271
BciT130I	CCWGG	5 cut(s)	1066, 1082, 1274, 1803, 2521
BciVI	GTATCC	1 cut(s)	1125
BclI	TGATCA	2 cut(s)	1932, 2914
BcoDI	GTCTC	3 cut(s)	583, 1501, 2715
BfaI	CTAG	4 cut(s)	798, 1628, 1700, 2444
BfmI	CTRYAG	2 cut(s)	2332, 2589
BfuAI	ACCTGC	1 cut(s)	1220
BfuI	GTATCC	1 cut(s)	1125
BglII	AGATCT	1 cut(s)	1927
BisI	GCNGC	8 cut(s)	192, 621, 712, 804, 825, 851, 885, 2014
BlpI	GCTNAGC	1 cut(s)	29
BlsI	GCNGC	8 cut(s)	193, 622, 713, 805, 826, 852, 886, 2015
Bme1390I	CCNGG	5 cut(s)	1066, 1082, 1274, 1803, 2521
Bme18I	GGWCC	2 cut(s)	1195, 1779
BmeT110I	CYCGRG	1 cut(s)	2682
BmgBI	CACGTC	1 cut(s)	48
BmgT120I	GGNCC	3 cut(s)	728, 1195, 1779
BmiI	GGNNCC	5 cut(s)	1196, 1385, 1747, 2498, 2981
BmrFI	CCNGG	5 cut(s)	1066, 1082, 1274, 1803, 2521
BmrI	ACTGGG	2 cut(s)	1334, 1648
BmsI	GCATC	7 cut(s)	235, 263, 595, 607, 1531, 2109, 2761
BmuI	ACTGGG	2 cut(s)	1334, 1648
BpiI	GAAGAC	5 cut(s)	15, 768, 1789, 1997, 3122
BpmI	CTGGAG	2 cut(s)	150, 191
Bpu10I	CCTNAGC	3 cut(s)	908, 1422, 2193
Bpu1102I	GCTNAGC	1 cut(s)	29
Bpu14I	TTCGAA	1 cut(s)	664
BpuEI	CTTGAG	5 cut(s)	440, 899, 1046, 1414, 2171
Bsa29I	ATCGAT	1 cut(s)	243
BsaAI	YACGTR	1 cut(s)	3069
BsaBI	GATNNNNATC	1 cut(s)	1113
BsaHI	GRCGYC	1 cut(s)	42
BsaI	GGTCTC	1 cut(s)	1501
BsaJI	CCNNGG	8 cut(s)	189, 627, 872, 1064, 1065, 1288, 1801, 2520
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bsc4I	CCNNNNNNNGG	5 cut(s)	461, 630, 1134, 1135, 2183
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	7 cut(s)	174, 789, 1198, 1340, 1494, 1643, 2498
Bse3DI	GCAATG	3 cut(s)	112, 145, 1216
Bse8I	GATNNNNATC	1 cut(s)	1113
BseBI	CCWGG	5 cut(s)	1066, 1082, 1274, 1803, 2521
BseCI	ATCGAT	1 cut(s)	243
BseDI	CCNNGG	8 cut(s)	189, 627, 872, 1064, 1065, 1288, 1801, 2520
BseJI	GATNNNNATC	1 cut(s)	1113
BseLI	CCNNNNNNNGG	5 cut(s)	461, 630, 1134, 1135, 2183
BseMI	GCAATG	3 cut(s)	112, 145, 1216
BseNI	ACTGG	7 cut(s)	174, 789, 1198, 1340, 1494, 1643, 2498
BseRI	GAGGAG	6 cut(s)	158, 161, 164, 167, 1378, 1937
BseSI	GKGCMC	2 cut(s)	1297, 1750
BseXI	GCAGC	6 cut(s)	632, 811, 815, 837, 896, 2025
BseYI	CCCAGC	1 cut(s)	2658
BsgI	GTGCAG	2 cut(s)	495, 810
Bsh1236I	CGCG	2 cut(s)	191, 2812
BshFI	GGCC	7 cut(s)	53, 194, 377, 730, 2169, 2375, 2519
BshNI	GGYRCC	2 cut(s)	1383, 1745
BshVI	ATCGAT	1 cut(s)	243
BsiHKAI	GWGCWC	4 cut(s)	1061, 1297, 2478, 2791
BsiHKCI	CYCGRG	1 cut(s)	2682
BsiSI	CCGG	2 cut(s)	111, 1951
BslFI	GGGAC	3 cut(s)	89, 2461, 2567
BslI	CCNNNNNNNGG	5 cut(s)	461, 630, 1134, 1135, 2183
BsmAI	GTCTC	3 cut(s)	583, 1501, 2715
BsmFI	GGGAC	3 cut(s)	89, 2461, 2567
BsmI	GAATGC	2 cut(s)	1879, 1978
BsnI	GGCC	7 cut(s)	53, 194, 377, 730, 2169, 2375, 2519
Bso31I	GGTCTC	1 cut(s)	1501
BsoBI	CYCGRG	1 cut(s)	2682
Bsp119I	TTCGAA	1 cut(s)	664
Bsp1286I	GDGCHC	5 cut(s)	1061, 1297, 1750, 2478, 2791
Bsp1407I	TGTACA	1 cut(s)	1314
Bsp1720I	GCTNAGC	1 cut(s)	29
BspACI	CCGC	8 cut(s)	189, 191, 248, 565, 712, 753, 835, 2551
BspANI	GGCC	7 cut(s)	53, 194, 377, 730, 2169, 2375, 2519
BspDI	ATCGAT	1 cut(s)	243
BspFNI	CGCG	2 cut(s)	191, 2812
BspHI	TCATGA	2 cut(s)	1411, 1737
BspLI	GGNNCC	5 cut(s)	1196, 1385, 1747, 2498, 2981
BspMI	ACCTGC	1 cut(s)	1220
BspPI	GGATC	6 cut(s)	176, 680, 743, 2703, 2974, 2987
BspT104I	TTCGAA	1 cut(s)	664
BspT107I	GGYRCC	2 cut(s)	1383, 1745
BspTNI	GGTCTC	1 cut(s)	1501
BsrDI	GCAATG	3 cut(s)	112, 145, 1216
BsrFI	RCCGGY	1 cut(s)	110
BsrGI	TGTACA	1 cut(s)	1314
BsrI	ACTGG	7 cut(s)	174, 789, 1198, 1340, 1494, 1643, 2498
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	8 cut(s)	189, 627, 872, 1064, 1065, 1288, 1801, 2520
BssNI	GRCGYC	1 cut(s)	42
BssSI	CACGAG	1 cut(s)	2580
BssT1I	CCWWGG	2 cut(s)	872, 1288
Bst2BI	CACGAG	1 cut(s)	2580
Bst2UI	CCWGG	5 cut(s)	1066, 1082, 1274, 1803, 2521
Bst6I	CTCTTC	2 cut(s)	2589, 2705
BstACI	GRCGYC	1 cut(s)	42
BstAUI	TGTACA	1 cut(s)	1314
BstBAI	YACGTR	1 cut(s)	3069
BstBI	TTCGAA	1 cut(s)	664
BstC8I	GCNNGC	9 cut(s)	196, 369, 510, 835, 2059, 2167, 2517, 2529, 2857
BstDSI	CCRYGG	2 cut(s)	189, 627
BstEII	GGTNACC	1 cut(s)	356
BstFNI	CGCG	2 cut(s)	191, 2812
BstHHI	GCGC	2 cut(s)	1956, 2199
BstMAI	GTCTC	3 cut(s)	583, 1501, 2715
BstNI	CCWGG	5 cut(s)	1066, 1082, 1274, 1803, 2521
BstNSI	RCATGY	4 cut(s)	371, 2003, 2165, 2515
BstPI	GGTNACC	1 cut(s)	356
BstSCI	CCNGG	5 cut(s)	1064, 1080, 1272, 1801, 2519
BstSFI	CTRYAG	2 cut(s)	2332, 2589
BstSLI	GKGCMC	2 cut(s)	1297, 1750
BstSNI	TACGTA	1 cut(s)	3069
BstUI	CGCG	2 cut(s)	191, 2812
BstV1I	GCAGC	6 cut(s)	632, 811, 815, 837, 896, 2025
BstV2I	GAAGAC	5 cut(s)	15, 768, 1789, 1997, 3122
BstX2I	RGATCY	4 cut(s)	672, 1927, 2695, 2979
BstYI	RGATCY	4 cut(s)	672, 1927, 2695, 2979
Bsu15I	ATCGAT	1 cut(s)	243
BsuI	GTATCC	1 cut(s)	1125
BsuRI	GGCC	7 cut(s)	53, 194, 377, 730, 2169, 2375, 2519
BsuTUI	ATCGAT	1 cut(s)	243
BtgI	CCRYGG	2 cut(s)	189, 627
BtgZI	GCGATG	2 cut(s)	1018, 2943
BtrI	CACGTC	1 cut(s)	48
BtsI	GCAGTG	2 cut(s)	1295, 2206
BveI	ACCTGC	1 cut(s)	1220
Cac8I	GCNNGC	9 cut(s)	196, 369, 510, 835, 2059, 2167, 2517, 2529, 2857
CaiI	CAGNNNCTG	1 cut(s)	1574
CciI	TCATGA	2 cut(s)	1411, 1737
CfoI	GCGC	2 cut(s)	1956, 2199
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	3 cut(s)	728, 1195, 1779
Cfr42I	CCGCGG	1 cut(s)	192
ClaI	ATCGAT	1 cut(s)	243
CseI	GACGC	2 cut(s)	31, 974
Csp6I	GTAC	7 cut(s)	1156, 1315, 1384, 1724, 2808, 2834, 3066
CspCI	CAANNNNNGTGG	2 cut(s)	616, 651
CviQI	GTAC	7 cut(s)	1156, 1315, 1384, 1724, 2808, 2834, 3066
DraI	TTTAAA	1 cut(s)	2677
DrdI	GACNNNNNNGTC	1 cut(s)	393
DseDI	GACNNNNNNGTC	1 cut(s)	393
EaeI	YGGCCR	4 cut(s)	51, 192, 375, 2167
Eam1104I	CTCTTC	2 cut(s)	2589, 2705
EarI	CTCTTC	2 cut(s)	2589, 2705
Eco105I	TACGTA	1 cut(s)	3069
Eco130I	CCWWGG	2 cut(s)	872, 1288
Eco31I	GGTCTC	1 cut(s)	1501
Eco47I	GGWCC	2 cut(s)	1195, 1779
Eco57I	CTGAAG	5 cut(s)	347, 419, 2787, 2975, 3116
Eco88I	CYCGRG	1 cut(s)	2682
Eco91I	GGTNACC	1 cut(s)	356
EcoO65I	GGTNACC	1 cut(s)	356
EcoRI	GAATTC	2 cut(s)	1671, 2095
EcoRII	CCWGG	5 cut(s)	1064, 1080, 1272, 1801, 2519
EcoT14I	CCWWGG	2 cut(s)	872, 1288
ErhI	CCWWGG	2 cut(s)	872, 1288
FalI	AAGNNNNNCTT	2 cut(s)	2684, 2716
FaqI	GGGAC	3 cut(s)	89, 2461, 2567
FauI	CCCGC	4 cut(s)	558, 760, 842, 2544
FbaI	TGATCA	2 cut(s)	1932, 2914
Fnu4HI	GCNGC	8 cut(s)	192, 621, 712, 804, 825, 851, 885, 2014
Fsp4HI	GCNGC	8 cut(s)	192, 621, 712, 804, 825, 851, 885, 2014
FspBI	CTAG	4 cut(s)	798, 1628, 1700, 2444
GlaI	GCGC	2 cut(s)	1955, 2198
GluI	GCNGC	8 cut(s)	192, 621, 712, 804, 825, 851, 885, 2014
GsaI	CCCAGC	1 cut(s)	2662
GsuI	CTGGAG	2 cut(s)	150, 191
HaeIII	GGCC	7 cut(s)	53, 194, 377, 730, 2169, 2375, 2519
HapII	CCGG	2 cut(s)	111, 1951
HgaI	GACGC	2 cut(s)	31, 974
HhaI	GCGC	2 cut(s)	1956, 2199
Hin1I	GRCGYC	1 cut(s)	42
Hin6I	GCGC	2 cut(s)	1954, 2197
HinP1I	GCGC	2 cut(s)	1954, 2197
HincII	GTYRAC	2 cut(s)	1636, 3058
HindII	GTYRAC	2 cut(s)	1636, 3058
HindIII	AAGCTT	2 cut(s)	1390, 2235
HpaI	GTTAAC	1 cut(s)	3058
HpaII	CCGG	2 cut(s)	111, 1951
HphI	GGTGA	8 cut(s)	134, 311, 317, 1066, 1872, 2011, 2333, 3091
Hpy166II	GTNNAC	7 cut(s)	1295, 1487, 1636, 1709, 1726, 2935, 3058
Hpy8I	GTNNAC	7 cut(s)	1295, 1487, 1636, 1709, 1726, 2935, 3058
Hpy99I	CGWCG	1 cut(s)	52
HpyCH4IV	ACGT	4 cut(s)	47, 1632, 2556, 3068
HpySE526I	ACGT	4 cut(s)	47, 1632, 2556, 3068
Hsp92I	GRCGYC	1 cut(s)	42
HspAI	GCGC	2 cut(s)	1954, 2197
KpnI	GGTACC	1 cut(s)	1387
Ksp22I	TGATCA	2 cut(s)	1932, 2914
KspAI	GTTAAC	1 cut(s)	3058
KspI	CCGCGG	1 cut(s)	192
LmnI	GCTCC	3 cut(s)	135, 2245, 2524
Lsp1109I	GCAGC	6 cut(s)	632, 811, 815, 837, 896, 2025
LweI	GCATC	7 cut(s)	235, 263, 595, 607, 1531, 2109, 2761
MaeI	CTAG	4 cut(s)	798, 1628, 1700, 2444
MaeII	ACGT	4 cut(s)	47, 1632, 2556, 3068
MflI	RGATCY	4 cut(s)	672, 1927, 2695, 2979
MhlI	GDGCHC	5 cut(s)	1061, 1297, 1750, 2478, 2791
MlsI	TGGCCA	2 cut(s)	377, 2169
MluNI	TGGCCA	2 cut(s)	377, 2169
MlyI	GAGTC	4 cut(s)	403, 489, 1421, 2825
MmeI	TCCRAC	1 cut(s)	594
Mox20I	TGGCCA	2 cut(s)	377, 2169
MroXI	GAANNNNTTC	3 cut(s)	660, 1468, 2307
MscI	TGGCCA	2 cut(s)	377, 2169
MseI	TTAA	7 cut(s)	570, 677, 2232, 2378, 2391, 2676, 3057
Msp20I	TGGCCA	2 cut(s)	377, 2169
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	2 cut(s)	111, 1951
MspR9I	CCNGG	5 cut(s)	1066, 1082, 1274, 1803, 2521
Mva1269I	GAATGC	2 cut(s)	1879, 1978
MvaI	CCWGG	5 cut(s)	1066, 1082, 1274, 1803, 2521
MvnI	CGCG	2 cut(s)	191, 2812
NlaIV	GGNNCC	5 cut(s)	1196, 1385, 1747, 2498, 2981
NmuCI	GTSAC	1 cut(s)	43
NspI	RCATGY	4 cut(s)	371, 2003, 2165, 2515
NspV	TTCGAA	1 cut(s)	664
PaeI	GCATGC	1 cut(s)	371
PaeR7I	CTCGAG	1 cut(s)	2682
PagI	TCATGA	2 cut(s)	1411, 1737
PaqCI	CACCTGC	1 cut(s)	1220
PasI	CCCWGGG	1 cut(s)	1065
PciI	ACATGT	1 cut(s)	1999
PctI	GAATGC	2 cut(s)	1879, 1978
PdmI	GAANNNNTTC	3 cut(s)	660, 1468, 2307
PfeI	GAWTC	9 cut(s)	857, 1236, 1415, 1469, 1571, 1678, 2173, 2188, 2882
PflFI	GACNNNGTC	1 cut(s)	479
PkrI	GCNGC	8 cut(s)	193, 622, 713, 805, 826, 852, 886, 2015
PleI	GAGTC	4 cut(s)	402, 488, 1421, 2824
PpsI	GAGTC	4 cut(s)	402, 488, 1421, 2824
Ppu21I	YACGTR	1 cut(s)	3069
PscI	ACATGT	1 cut(s)	1999
PsiI	TTATAA	1 cut(s)	3029
Psp6I	CCWGG	5 cut(s)	1064, 1080, 1272, 1801, 2519
PspEI	GGTNACC	1 cut(s)	356
PspFI	CCCAGC	1 cut(s)	2658
PspGI	CCWGG	5 cut(s)	1064, 1080, 1272, 1801, 2519
PspN4I	GGNNCC	5 cut(s)	1196, 1385, 1747, 2498, 2981
PspPI	GGNCC	3 cut(s)	728, 1195, 1779
PstNI	CAGNNNCTG	1 cut(s)	1574
PsuI	RGATCY	4 cut(s)	672, 1927, 2695, 2979
PsyI	GACNNNGTC	1 cut(s)	479
RsaI	GTAC	7 cut(s)	1157, 1316, 1385, 1725, 2809, 2835, 3067
RsaNI	GTAC	7 cut(s)	1156, 1315, 1384, 1724, 2808, 2834, 3066
SacII	CCGCGG	1 cut(s)	192
SaqAI	TTAA	7 cut(s)	570, 677, 2232, 2378, 2391, 2676, 3057
SatI	GCNGC	8 cut(s)	192, 621, 712, 804, 825, 851, 885, 2014
Sau96I	GGNCC	3 cut(s)	728, 1195, 1779
SchI	GAGTC	4 cut(s)	403, 489, 1421, 2825
ScrFI	CCNGG	5 cut(s)	1066, 1082, 1274, 1803, 2521
SduI	GDGCHC	5 cut(s)	1061, 1297, 1750, 2478, 2791
SfaNI	GCATC	7 cut(s)	235, 263, 595, 607, 1531, 2109, 2761
SfcI	CTRYAG	2 cut(s)	2332, 2589
Sfr274I	CTCGAG	1 cut(s)	2682
Sfr303I	CCGCGG	1 cut(s)	192
SfuI	TTCGAA	1 cut(s)	664
SgrBI	CCGCGG	1 cut(s)	192
SinI	GGWCC	2 cut(s)	1195, 1779
SlaI	CTCGAG	1 cut(s)	2682
SmlI	CTYRAG	6 cut(s)	419, 878, 1025, 1429, 2150, 2682
SmoI	CTYRAG	6 cut(s)	419, 878, 1025, 1429, 2150, 2682
SnaBI	TACGTA	1 cut(s)	3069
SphI	GCATGC	1 cut(s)	371
SsiI	CCGC	8 cut(s)	189, 191, 248, 565, 712, 753, 835, 2551
SspI	AATATT	3 cut(s)	493, 2950, 3033
SspMI	CTAG	4 cut(s)	798, 1628, 1700, 2444
StyD4I	CCNGG	5 cut(s)	1064, 1080, 1272, 1801, 2519
StyI	CCWWGG	2 cut(s)	872, 1288
TaiI	ACGT	4 cut(s)	50, 1635, 2559, 3071
TaqI	TCGA	5 cut(s)	243, 264, 664, 1895, 2683
TatI	WGTACW	3 cut(s)	1155, 1314, 1723
TauI	GCSGC	2 cut(s)	194, 714
TfiI	GAWTC	9 cut(s)	857, 1236, 1415, 1469, 1571, 1678, 2173, 2188, 2882
Tru1I	TTAA	7 cut(s)	570, 677, 2232, 2378, 2391, 2676, 3057
Tru9I	TTAA	7 cut(s)	570, 677, 2232, 2378, 2391, 2676, 3057
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	6 cut(s)	620, 803, 824, 850, 884, 2013
Tsp45I	GTSAC	1 cut(s)	43
TspGWI	ACGGA	3 cut(s)	406, 659, 1059
Tth111I	GACNNNGTC	1 cut(s)	479
VneI	GTGCAC	1 cut(s)	1293
VpaK11BI	GGWCC	2 cut(s)	1195, 1779
XapI	RAATTY	6 cut(s)	1036, 1671, 2095, 2127, 2387, 2452
XceI	RCATGY	4 cut(s)	371, 2003, 2165, 2515
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1229, 2065
XhoI	CTCGAG	1 cut(s)	2682
XmnI	GAANNNNTTC	3 cut(s)	660, 1468, 2307
XspI	CTAG	4 cut(s)	798, 1628, 1700, 2444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.