isoform X1
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PseudoU_synth_1 | PF01416 | 237 - 346 | 1.7e-30 | tRNA pseudouridine synthase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1082 |
| AccB1I | GGYRCC | 1 cut(s) | 997 |
| AccI | GTMKAC | 1 cut(s) | 21 |
| AccII | CGCG | 1 cut(s) | 1243 |
| AccIII | TCCGGA | 1 cut(s) | 574 |
| AciI | CCGC | 2 cut(s) | 162, 781 |
| AclWI | GGATC | 4 cut(s) | 245, 323, 336, 503 |
| AcoI | YGGCCR | 2 cut(s) | 289, 916 |
| AcsI | RAATTY | 5 cut(s) | 348, 682, 713, 969, 1031 |
| AcuI | CTGAAG | 4 cut(s) | 141, 718, 1044, 1197 |
| AfaI | GTAC | 2 cut(s) | 609, 903 |
| AfeI | AGCGCT | 1 cut(s) | 1187 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 841, 892, 989 |
| AgsI | TTSAA | 4 cut(s) | 179, 274, 355, 1022 |
| AjiI | CACGTC | 1 cut(s) | 1274 |
| AjnI | CCWGG | 1 cut(s) | 220 |
| AluBI | AGCT | 7 cut(s) | 174, 359, 636, 838, 1076, 1124, 1295 |
| AluI | AGCT | 7 cut(s) | 174, 359, 636, 838, 1076, 1124, 1295 |
| Alw21I | GWGCWC | 1 cut(s) | 771 |
| Alw26I | GTCTC | 3 cut(s) | 692, 1046, 1264 |
| Alw44I | GTGCAC | 1 cut(s) | 767 |
| AlwI | GGATC | 4 cut(s) | 245, 323, 336, 503 |
| Aor13HI | TCCGGA | 1 cut(s) | 574 |
| Aor51HI | AGCGCT | 1 cut(s) | 1187 |
| AoxI | GGCC | 2 cut(s) | 289, 916 |
| ApaLI | GTGCAC | 1 cut(s) | 767 |
| ApeKI | GCWGC | 3 cut(s) | 96, 311, 1124 |
| ApoI | RAATTY | 5 cut(s) | 348, 682, 713, 969, 1031 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 361, 393 |
| AspLEI | GCGC | 3 cut(s) | 1083, 1188, 1245 |
| AspS9I | GGNCC | 1 cut(s) | 883 |
| AsuHPI | GGTGA | 4 cut(s) | 239, 398, 548, 734 |
| AvaII | GGWCC | 1 cut(s) | 883 |
| BaeGI | GKGCMC | 1 cut(s) | 771 |
| BalI | TGGCCA | 2 cut(s) | 291, 918 |
| BamHI | GGATCC | 1 cut(s) | 328 |
| BanI | GGYRCC | 1 cut(s) | 997 |
| BbsI | GAAGAC | 2 cut(s) | 129, 374 |
| Bbv12I | GWGCWC | 1 cut(s) | 771 |
| BbvCI | CCTCAGC | 1 cut(s) | 315 |
| BbvI | GCAGC | 3 cut(s) | 83, 298, 1111 |
| BccI | CCATC | 4 cut(s) | 108, 319, 745, 1264 |
| BciT130I | CCWGG | 1 cut(s) | 222 |
| BciVI | GTATCC | 1 cut(s) | 952 |
| BcoDI | GTCTC | 3 cut(s) | 692, 1046, 1264 |
| BfaI | CTAG | 1 cut(s) | 513 |
| BfmI | CTRYAG | 2 cut(s) | 15, 775 |
| BfoI | RGCGCY | 1 cut(s) | 1189 |
| BfuI | GTATCC | 1 cut(s) | 952 |
| BisI | GCNGC | 3 cut(s) | 97, 312, 1125 |
| BlsI | GCNGC | 3 cut(s) | 98, 313, 1126 |
| Bme1390I | CCNGG | 1 cut(s) | 222 |
| Bme18I | GGWCC | 1 cut(s) | 883 |
| BmgBI | CACGTC | 1 cut(s) | 1274 |
| BmgT120I | GGNCC | 1 cut(s) | 883 |
| BmiI | GGNNCC | 3 cut(s) | 330, 833, 999 |
| BmrFI | CCNGG | 1 cut(s) | 222 |
| BmsI | GCATC | 6 cut(s) | 745, 878, 886, 937, 1054, 1139 |
| BpiI | GAAGAC | 2 cut(s) | 129, 374 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 967, 999 |
| Bpu10I | CCTNAGC | 1 cut(s) | 315 |
| BpuEI | CTTGAG | 4 cut(s) | 383, 394, 467, 1028 |
| Bsa29I | ATCGAT | 1 cut(s) | 543 |
| BsaI | GGTCTC | 1 cut(s) | 1046 |
| BsaJI | CCNNGG | 3 cut(s) | 195, 919, 1191 |
| BsaWI | WCCGGW | 1 cut(s) | 574 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 841, 892, 989 |
| Bse1I | ACTGG | 2 cut(s) | 960, 1160 |
| BseAI | TCCGGA | 1 cut(s) | 574 |
| BseBI | CCWGG | 1 cut(s) | 222 |
| BseCI | ATCGAT | 1 cut(s) | 543 |
| BseDI | CCNNGG | 3 cut(s) | 195, 919, 1191 |
| BseGI | GGATG | 2 cut(s) | 583, 760 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 841, 892, 989 |
| BseMII | CTCAG | 2 cut(s) | 306, 1242 |
| BseNI | ACTGG | 2 cut(s) | 960, 1160 |
| BseSI | GKGCMC | 1 cut(s) | 771 |
| BseXI | GCAGC | 3 cut(s) | 83, 298, 1111 |
| Bsh1236I | CGCG | 1 cut(s) | 1243 |
| BshFI | GGCC | 2 cut(s) | 291, 918 |
| BshNI | GGYRCC | 1 cut(s) | 997 |
| BshVI | ATCGAT | 1 cut(s) | 543 |
| BsiHKAI | GWGCWC | 1 cut(s) | 771 |
| BsiSI | CCGG | 2 cut(s) | 31, 575 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 841, 892, 989 |
| BsmAI | GTCTC | 3 cut(s) | 692, 1046, 1264 |
| BsmBI | CGTCTC | 1 cut(s) | 1264 |
| BsnI | GGCC | 2 cut(s) | 291, 918 |
| Bso31I | GGTCTC | 1 cut(s) | 1046 |
| Bsp1286I | GDGCHC | 1 cut(s) | 771 |
| Bsp13I | TCCGGA | 1 cut(s) | 574 |
| Bsp143I | GATC | 6 cut(s) | 237, 328, 381, 473, 508, 1180 |
| BspACI | CCGC | 2 cut(s) | 162, 781 |
| BspANI | GGCC | 2 cut(s) | 291, 918 |
| BspCNI | CTCAG | 2 cut(s) | 307, 1243 |
| BspDI | ATCGAT | 1 cut(s) | 543 |
| BspEI | TCCGGA | 1 cut(s) | 574 |
| BspFNI | CGCG | 1 cut(s) | 1243 |
| BspHI | TCATGA | 3 cut(s) | 240, 925, 1096 |
| BspLI | GGNNCC | 3 cut(s) | 330, 833, 999 |
| BspPI | GGATC | 4 cut(s) | 245, 323, 336, 503 |
| BspQI | GCTCTTC | 1 cut(s) | 1063 |
| BspT107I | GGYRCC | 1 cut(s) | 997 |
| BspTNI | GGTCTC | 1 cut(s) | 1046 |
| BsrI | ACTGG | 2 cut(s) | 960, 1160 |
| BssECI | CCNNGG | 3 cut(s) | 195, 919, 1191 |
| BssMI | GATC | 6 cut(s) | 237, 328, 381, 473, 508, 1180 |
| BssT1I | CCWWGG | 3 cut(s) | 195, 919, 1191 |
| Bst2UI | CCWGG | 1 cut(s) | 222 |
| Bst4CI | ACNGT | 1 cut(s) | 16 |
| Bst6I | CTCTTC | 4 cut(s) | 133, 1063, 1260, 1301 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 62 |
| BstC8I | GCNNGC | 2 cut(s) | 1054, 1297 |
| BstDEI | CTNAG | 4 cut(s) | 315, 641, 1145, 1251 |
| BstF5I | GGATG | 2 cut(s) | 583, 760 |
| BstFNI | CGCG | 1 cut(s) | 1243 |
| BstH2I | RGCGCY | 1 cut(s) | 1189 |
| BstHHI | GCGC | 3 cut(s) | 1083, 1188, 1245 |
| BstKTI | GATC | 6 cut(s) | 240, 331, 384, 476, 511, 1183 |
| BstMAI | GTCTC | 3 cut(s) | 692, 1046, 1264 |
| BstMBI | GATC | 6 cut(s) | 237, 328, 381, 473, 508, 1180 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 62, 317, 642, 1073 |
| BstNI | CCWGG | 1 cut(s) | 222 |
| BstNSI | RCATGY | 1 cut(s) | 495 |
| BstSCI | CCNGG | 1 cut(s) | 220 |
| BstSFI | CTRYAG | 2 cut(s) | 15, 775 |
| BstSLI | GKGCMC | 1 cut(s) | 771 |
| BstUI | CGCG | 1 cut(s) | 1243 |
| BstV1I | GCAGC | 3 cut(s) | 83, 298, 1111 |
| BstV2I | GAAGAC | 2 cut(s) | 129, 374 |
| BstX2I | RGATCY | 2 cut(s) | 328, 508 |
| BstYI | RGATCY | 2 cut(s) | 328, 508 |
| Bsu15I | ATCGAT | 1 cut(s) | 543 |
| BsuI | GTATCC | 1 cut(s) | 952 |
| BsuRI | GGCC | 2 cut(s) | 291, 918 |
| BsuTUI | ATCGAT | 1 cut(s) | 543 |
| BtrI | CACGTC | 1 cut(s) | 1274 |
| BtsCI | GGATG | 2 cut(s) | 583, 760 |
| BtsIMutI | CAGTG | 3 cut(s) | 12, 508, 628 |
| Cac8I | GCNNGC | 2 cut(s) | 1054, 1297 |
| CciI | TCATGA | 3 cut(s) | 240, 925, 1096 |
| CfoI | GCGC | 3 cut(s) | 1083, 1188, 1245 |
| Cfr13I | GGNCC | 1 cut(s) | 883 |
| ClaI | ATCGAT | 1 cut(s) | 543 |
| Csp6I | GTAC | 2 cut(s) | 608, 902 |
| CviQI | GTAC | 2 cut(s) | 608, 902 |
| DdeI | CTNAG | 4 cut(s) | 315, 641, 1145, 1251 |
| DpnI | GATC | 6 cut(s) | 239, 330, 383, 475, 510, 1182 |
| DpnII | GATC | 6 cut(s) | 237, 328, 381, 473, 508, 1180 |
| DraI | TTTAAA | 1 cut(s) | 850 |
| EaeI | YGGCCR | 2 cut(s) | 289, 916 |
| Eam1104I | CTCTTC | 4 cut(s) | 133, 1063, 1260, 1301 |
| EarI | CTCTTC | 4 cut(s) | 133, 1063, 1260, 1301 |
| EciI | GGCGGA | 1 cut(s) | 796 |
| Eco130I | CCWWGG | 3 cut(s) | 195, 919, 1191 |
| Eco31I | GGTCTC | 1 cut(s) | 1046 |
| Eco47I | GGWCC | 1 cut(s) | 883 |
| Eco47III | AGCGCT | 1 cut(s) | 1187 |
| Eco57I | CTGAAG | 4 cut(s) | 141, 718, 1044, 1197 |
| EcoRI | GAATTC | 1 cut(s) | 969 |
| EcoRII | CCWGG | 1 cut(s) | 220 |
| EcoT14I | CCWWGG | 3 cut(s) | 195, 919, 1191 |
| EcoT22I | ATGCAT | 2 cut(s) | 893, 952 |
| ErhI | CCWWGG | 3 cut(s) | 195, 919, 1191 |
| Esp3I | CGTCTC | 1 cut(s) | 1264 |
| FauI | CCCGC | 1 cut(s) | 155 |
| FblI | GTMKAC | 1 cut(s) | 21 |
| Fnu4HI | GCNGC | 3 cut(s) | 97, 312, 1125 |
| FokI | GGATG | 2 cut(s) | 590, 767 |
| Fsp4HI | GCNGC | 3 cut(s) | 97, 312, 1125 |
| FspBI | CTAG | 1 cut(s) | 513 |
| FspI | TGCGCA | 1 cut(s) | 1082 |
| GlaI | GCGC | 3 cut(s) | 1082, 1187, 1244 |
| GluI | GCNGC | 3 cut(s) | 97, 312, 1125 |
| HaeII | RGCGCY | 1 cut(s) | 1189 |
| HaeIII | GGCC | 2 cut(s) | 291, 918 |
| HapII | CCGG | 2 cut(s) | 31, 575 |
| HhaI | GCGC | 3 cut(s) | 1083, 1188, 1245 |
| Hin6I | GCGC | 3 cut(s) | 1081, 1186, 1243 |
| HinP1I | GCGC | 3 cut(s) | 1081, 1186, 1243 |
| HincII | GTYRAC | 1 cut(s) | 22 |
| HindII | GTYRAC | 1 cut(s) | 22 |
| HindIII | AAGCTT | 1 cut(s) | 1074 |
| HinfI | GANTC | 9 cut(s) | 23, 125, 244, 341, 398, 562, 567, 929, 1006 |
| HpaII | CCGG | 2 cut(s) | 31, 575 |
| HphI | GGTGA | 4 cut(s) | 239, 398, 548, 734 |
| Hpy166II | GTNNAC | 3 cut(s) | 22, 725, 769 |
| Hpy188I | TCNGA | 7 cut(s) | 142, 346, 681, 737, 887, 975, 1063 |
| Hpy188III | TCNNGA | 9 cut(s) | 44, 241, 362, 411, 575, 910, 926, 935, 1097 |
| Hpy8I | GTNNAC | 3 cut(s) | 22, 725, 769 |
| HpyAV | CCTTC | 3 cut(s) | 388, 527, 581 |
| HpyCH4III | ACNGT | 1 cut(s) | 16 |
| HpyCH4IV | ACGT | 2 cut(s) | 6, 1273 |
| HpyCH4V | TGCA | 7 cut(s) | 769, 800, 891, 950, 1127, 1277, 1299 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 62, 317, 642, 1073 |
| HpyF3I | CTNAG | 4 cut(s) | 315, 641, 1145, 1251 |
| HpySE526I | ACGT | 2 cut(s) | 6, 1273 |
| HspAI | GCGC | 3 cut(s) | 1081, 1186, 1243 |
| Kpn2I | TCCGGA | 1 cut(s) | 574 |
| Kzo9I | GATC | 6 cut(s) | 237, 328, 381, 473, 508, 1180 |
| LguI | GCTCTTC | 1 cut(s) | 1063 |
| LmnI | GCTCC | 1 cut(s) | 1193 |
| Lsp1109I | GCAGC | 3 cut(s) | 83, 298, 1111 |
| LweI | GCATC | 6 cut(s) | 745, 878, 886, 937, 1054, 1139 |
| MaeI | CTAG | 1 cut(s) | 513 |
| MaeII | ACGT | 2 cut(s) | 6, 1273 |
| MaeIII | GTNAC | 2 cut(s) | 7, 224 |
| MalI | GATC | 6 cut(s) | 239, 330, 383, 475, 510, 1182 |
| MboI | GATC | 6 cut(s) | 237, 328, 381, 473, 508, 1180 |
| MflI | RGATCY | 2 cut(s) | 328, 508 |
| MhlI | GDGCHC | 1 cut(s) | 771 |
| MlsI | TGGCCA | 2 cut(s) | 291, 918 |
| MluNI | TGGCCA | 2 cut(s) | 291, 918 |
| MlyI | GAGTC | 4 cut(s) | 17, 119, 350, 576 |
| MmeI | TCCRAC | 1 cut(s) | 356 |
| Mox20I | TGGCCA | 2 cut(s) | 291, 918 |
| Mph1103I | ATGCAT | 2 cut(s) | 893, 952 |
| MroI | TCCGGA | 1 cut(s) | 574 |
| MscI | TGGCCA | 2 cut(s) | 291, 918 |
| MseI | TTAA | 7 cut(s) | 59, 207, 470, 762, 849, 1134, 1283 |
| Msp20I | TGGCCA | 2 cut(s) | 291, 918 |
| MspI | CCGG | 2 cut(s) | 31, 575 |
| MspR9I | CCNGG | 1 cut(s) | 222 |
| MvaI | CCWGG | 1 cut(s) | 222 |
| MvnI | CGCG | 1 cut(s) | 1243 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 62, 317, 642, 1073 |
| NdeII | GATC | 6 cut(s) | 237, 328, 381, 473, 508, 1180 |
| NlaIV | GGNNCC | 3 cut(s) | 330, 833, 999 |
| NsbI | TGCGCA | 1 cut(s) | 1082 |
| NsiI | ATGCAT | 2 cut(s) | 893, 952 |
| NspI | RCATGY | 1 cut(s) | 495 |
| PagI | TCATGA | 3 cut(s) | 240, 925, 1096 |
| PciSI | GCTCTTC | 1 cut(s) | 1063 |
| PfeI | GAWTC | 5 cut(s) | 244, 398, 562, 929, 1006 |
| PkrI | GCNGC | 3 cut(s) | 98, 313, 1126 |
| PleI | GAGTC | 4 cut(s) | 17, 119, 349, 575 |
| PpsI | GAGTC | 4 cut(s) | 17, 119, 349, 575 |
| Psp6I | CCWGG | 1 cut(s) | 220 |
| PspGI | CCWGG | 1 cut(s) | 220 |
| PspN4I | GGNNCC | 3 cut(s) | 330, 833, 999 |
| PspPI | GGNCC | 1 cut(s) | 883 |
| PsuI | RGATCY | 2 cut(s) | 328, 508 |
| RsaI | GTAC | 2 cut(s) | 609, 903 |
| RsaNI | GTAC | 2 cut(s) | 608, 902 |
| SalI | GTCGAC | 1 cut(s) | 20 |
| SapI | GCTCTTC | 1 cut(s) | 1063 |
| SaqAI | TTAA | 7 cut(s) | 59, 207, 470, 762, 849, 1134, 1283 |
| SatI | GCNGC | 3 cut(s) | 97, 312, 1125 |
| Sau3AI | GATC | 6 cut(s) | 237, 328, 381, 473, 508, 1180 |
| Sau96I | GGNCC | 1 cut(s) | 883 |
| SchI | GAGTC | 4 cut(s) | 17, 119, 350, 576 |
| ScrFI | CCNGG | 1 cut(s) | 222 |
| SduI | GDGCHC | 1 cut(s) | 771 |
| SfaNI | GCATC | 6 cut(s) | 745, 878, 886, 937, 1054, 1139 |
| SfcI | CTRYAG | 2 cut(s) | 15, 775 |
| SinI | GGWCC | 1 cut(s) | 883 |
| SmlI | CTYRAG | 4 cut(s) | 362, 409, 482, 1043 |
| SmoI | CTYRAG | 4 cut(s) | 362, 409, 482, 1043 |
| SsiI | CCGC | 2 cut(s) | 162, 781 |
| SspMI | CTAG | 1 cut(s) | 513 |
| StyD4I | CCNGG | 1 cut(s) | 220 |
| StyI | CCWWGG | 3 cut(s) | 195, 919, 1191 |
| TaaI | ACNGT | 1 cut(s) | 16 |
| TaiI | ACGT | 2 cut(s) | 9, 1276 |
| TaqI | TCGA | 6 cut(s) | 21, 170, 543, 565, 586, 1105 |
| TatI | WGTACW | 1 cut(s) | 901 |
| TfiI | GAWTC | 5 cut(s) | 244, 398, 562, 929, 1006 |
| Tru1I | TTAA | 7 cut(s) | 59, 207, 470, 762, 849, 1134, 1283 |
| Tru9I | TTAA | 7 cut(s) | 59, 207, 470, 762, 849, 1134, 1283 |
| TscAI | CASTG | 3 cut(s) | 19, 508, 628 |
| TseI | GCWGC | 3 cut(s) | 96, 311, 1124 |
| TspDTI | ATGAA | 7 cut(s) | 257, 546, 783, 942, 1113, 1223, 1278 |
| TspGWI | ACGGA | 1 cut(s) | 999 |
| TspRI | CASTG | 3 cut(s) | 19, 508, 628 |
| VneI | GTGCAC | 1 cut(s) | 767 |
| VpaK11BI | GGWCC | 1 cut(s) | 883 |
| XapI | RAATTY | 5 cut(s) | 348, 682, 713, 969, 1031 |
| XceI | RCATGY | 1 cut(s) | 495 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 299 |
| XmiI | GTMKAC | 1 cut(s) | 21 |
| XspI | CTAG | 1 cut(s) | 513 |
| Zsp2I | ATGCAT | 2 cut(s) | 893, 952 |