isoform X1
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 367 |
| AccB1I | GGYRCC | 2 cut(s) | 1274, 1323 |
| AccI | GTMKAC | 1 cut(s) | 696 |
| AciI | CCGC | 2 cut(s) | 1252, 1466 |
| AclI | AACGTT | 1 cut(s) | 1492 |
| AclWI | GGATC | 3 cut(s) | 2, 522, 535 |
| AcuI | CTGAAG | 2 cut(s) | 125, 369 |
| AjnI | CCWGG | 2 cut(s) | 154, 1391 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 268, 300 |
| Alw21I | GWGCWC | 1 cut(s) | 432 |
| Alw26I | GTCTC | 1 cut(s) | 965 |
| AlwI | GGATC | 3 cut(s) | 2, 522, 535 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 904 |
| AoxI | GGCC | 1 cut(s) | 666 |
| ApeKI | GCWGC | 3 cut(s) | 422, 554, 1344 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 283 |
| AspS9I | GGNCC | 3 cut(s) | 666, 1435, 1497 |
| AsuC2I | CCSGG | 1 cut(s) | 750 |
| AsuHPI | GGTGA | 1 cut(s) | 344 |
| AvaII | GGWCC | 2 cut(s) | 1435, 1497 |
| BamHI | GGATCC | 1 cut(s) | 527 |
| BanI | GGYRCC | 2 cut(s) | 1274, 1323 |
| BanII | GRGCYC | 1 cut(s) | 432 |
| BbsI | GAAGAC | 1 cut(s) | 99 |
| Bbv12I | GWGCWC | 1 cut(s) | 432 |
| BbvI | GCAGC | 3 cut(s) | 409, 541, 1331 |
| BccI | CCATC | 3 cut(s) | 787, 1456, 1537 |
| BceAI | ACGGC | 1 cut(s) | 1311 |
| BciT130I | CCWGG | 2 cut(s) | 156, 1393 |
| BcnI | CCSGG | 1 cut(s) | 750 |
| BcoDI | GTCTC | 1 cut(s) | 965 |
| BfaI | CTAG | 5 cut(s) | 21, 216, 947, 1341, 1584 |
| BisI | GCNGC | 3 cut(s) | 423, 555, 1345 |
| BlpI | GCTNAGC | 1 cut(s) | 426 |
| BlsI | GCNGC | 3 cut(s) | 424, 556, 1346 |
| Bme1390I | CCNGG | 3 cut(s) | 156, 750, 1393 |
| Bme18I | GGWCC | 2 cut(s) | 1435, 1497 |
| BmgT120I | GGNCC | 3 cut(s) | 666, 1435, 1497 |
| BmiI | GGNNCC | 4 cut(s) | 529, 688, 1276, 1325 |
| BmrFI | CCNGG | 3 cut(s) | 156, 750, 1393 |
| BmsI | GCATC | 4 cut(s) | 189, 325, 670, 1404 |
| BpiI | GAAGAC | 1 cut(s) | 99 |
| BpmI | CTGGAG | 1 cut(s) | 95 |
| Bpu10I | CCTNAGC | 1 cut(s) | 443 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 426 |
| BpuEI | CTTGAG | 1 cut(s) | 1011 |
| BpuMI | CCSGG | 1 cut(s) | 750 |
| BsaJI | CCNNGG | 5 cut(s) | 531, 587, 669, 748, 1311 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 268, 298, 1514, 1544 |
| Bse118I | RCCGGY | 1 cut(s) | 1145 |
| Bse1I | ACTGG | 4 cut(s) | 112, 919, 989, 1418 |
| Bse3DI | GCAATG | 1 cut(s) | 549 |
| BseBI | CCWGG | 2 cut(s) | 156, 1393 |
| BseDI | CCNNGG | 5 cut(s) | 531, 587, 669, 748, 1311 |
| BseGI | GGATG | 1 cut(s) | 1467 |
| BseMI | GCAATG | 1 cut(s) | 549 |
| BseMII | CTCAG | 4 cut(s) | 72, 417, 457, 960 |
| BseNI | ACTGG | 4 cut(s) | 112, 919, 989, 1418 |
| BseXI | GCAGC | 3 cut(s) | 409, 541, 1331 |
| BsgI | GTGCAG | 1 cut(s) | 1559 |
| Bsh1285I | CGRYCG | 1 cut(s) | 187 |
| BshFI | GGCC | 1 cut(s) | 668 |
| BshNI | GGYRCC | 2 cut(s) | 1274, 1323 |
| BsiEI | CGRYCG | 1 cut(s) | 187 |
| BsiHKAI | GWGCWC | 1 cut(s) | 432 |
| BsiSI | CCGG | 2 cut(s) | 750, 1146 |
| BslFI | GGGAC | 1 cut(s) | 279 |
| BsmAI | GTCTC | 1 cut(s) | 965 |
| BsmFI | GGGAC | 1 cut(s) | 279 |
| BsmI | GAATGC | 1 cut(s) | 338 |
| BsnI | GGCC | 1 cut(s) | 668 |
| Bsp1286I | GDGCHC | 1 cut(s) | 432 |
| Bsp143I | GATC | 5 cut(s) | 7, 184, 527, 1601, 1633 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 426 |
| Bsp19I | CCATGG | 1 cut(s) | 1311 |
| BspACI | CCGC | 2 cut(s) | 1252, 1466 |
| BspANI | GGCC | 1 cut(s) | 668 |
| BspCNI | CTCAG | 4 cut(s) | 73, 418, 456, 961 |
| BspLI | GGNNCC | 4 cut(s) | 529, 688, 1276, 1325 |
| BspPI | GGATC | 3 cut(s) | 2, 522, 535 |
| BspQI | GCTCTTC | 1 cut(s) | 760 |
| BspT107I | GGYRCC | 2 cut(s) | 1274, 1323 |
| BsrDI | GCAATG | 1 cut(s) | 549 |
| BsrFI | RCCGGY | 1 cut(s) | 1145 |
| BsrI | ACTGG | 4 cut(s) | 112, 919, 989, 1418 |
| BssAI | RCCGGY | 1 cut(s) | 1145 |
| BssECI | CCNNGG | 5 cut(s) | 531, 587, 669, 748, 1311 |
| BssMI | GATC | 5 cut(s) | 7, 184, 527, 1601, 1633 |
| BssT1I | CCWWGG | 4 cut(s) | 531, 587, 669, 1311 |
| Bst2UI | CCWGG | 2 cut(s) | 156, 1393 |
| Bst4CI | ACNGT | 2 cut(s) | 976, 1241 |
| Bst6I | CTCTTC | 4 cut(s) | 760, 1004, 1027, 1476 |
| BstDEI | CTNAG | 5 cut(s) | 81, 426, 443, 969, 1259 |
| BstDSI | CCRYGG | 1 cut(s) | 1311 |
| BstF5I | GGATG | 1 cut(s) | 1467 |
| BstKTI | GATC | 5 cut(s) | 10, 187, 530, 1604, 1636 |
| BstMAI | GTCTC | 1 cut(s) | 965 |
| BstMBI | GATC | 5 cut(s) | 7, 184, 527, 1601, 1633 |
| BstMCI | CGRYCG | 1 cut(s) | 187 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 653, 674, 1142, 1414 |
| BstNI | CCWGG | 2 cut(s) | 156, 1393 |
| BstNSI | RCATGY | 1 cut(s) | 1644 |
| BstSCI | CCNGG | 3 cut(s) | 154, 748, 1391 |
| BstV1I | GCAGC | 3 cut(s) | 409, 541, 1331 |
| BstV2I | GAAGAC | 1 cut(s) | 99 |
| BstX2I | RGATCY | 1 cut(s) | 527 |
| BstYI | RGATCY | 1 cut(s) | 527 |
| BsuRI | GGCC | 1 cut(s) | 668 |
| BtgI | CCRYGG | 1 cut(s) | 1311 |
| BtsCI | GGATG | 1 cut(s) | 1467 |
| BtsIMutI | CAGTG | 1 cut(s) | 294 |
| CaiI | CAGNNNCTG | 1 cut(s) | 904 |
| Cfr10I | RCCGGY | 1 cut(s) | 1145 |
| Cfr13I | GGNCC | 3 cut(s) | 666, 1435, 1497 |
| CviAII | CATG | 7 cut(s) | 70, 398, 416, 1312, 1637, 1641, 1647 |
| DdeI | CTNAG | 5 cut(s) | 81, 426, 443, 969, 1259 |
| DpnI | GATC | 5 cut(s) | 9, 186, 529, 1603, 1635 |
| DpnII | GATC | 5 cut(s) | 7, 184, 527, 1601, 1633 |
| DraI | TTTAAA | 1 cut(s) | 255 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 367 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 367 |
| Eam1104I | CTCTTC | 4 cut(s) | 760, 1004, 1027, 1476 |
| EarI | CTCTTC | 4 cut(s) | 760, 1004, 1027, 1476 |
| Ecl136II | GAGCTC | 1 cut(s) | 430 |
| Eco130I | CCWWGG | 4 cut(s) | 531, 587, 669, 1311 |
| Eco24I | GRGCYC | 1 cut(s) | 432 |
| Eco47I | GGWCC | 2 cut(s) | 1435, 1497 |
| Eco53kI | GAGCTC | 1 cut(s) | 430 |
| Eco57I | CTGAAG | 2 cut(s) | 125, 369 |
| EcoICRI | GAGCTC | 1 cut(s) | 430 |
| EcoRII | CCWGG | 2 cut(s) | 154, 1391 |
| EcoT14I | CCWWGG | 4 cut(s) | 531, 587, 669, 1311 |
| EcoT22I | ATGCAT | 3 cut(s) | 71, 340, 1642 |
| EcoT38I | GRGCYC | 1 cut(s) | 432 |
| ErhI | CCWWGG | 4 cut(s) | 531, 587, 669, 1311 |
| FaeI | CATG | 7 cut(s) | 73, 401, 419, 1315, 1640, 1644, 1650 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 632, 664 |
| FaqI | GGGAC | 1 cut(s) | 279 |
| FatI | CATG | 7 cut(s) | 69, 397, 415, 1311, 1636, 1640, 1646 |
| FauI | CCCGC | 1 cut(s) | 1459 |
| FauNDI | CATATG | 3 cut(s) | 619, 953, 1615 |
| FblI | GTMKAC | 1 cut(s) | 696 |
| Fnu4HI | GCNGC | 3 cut(s) | 423, 555, 1345 |
| FokI | GGATG | 1 cut(s) | 1474 |
| FriOI | GRGCYC | 1 cut(s) | 432 |
| Fsp4HI | GCNGC | 3 cut(s) | 423, 555, 1345 |
| FspBI | CTAG | 5 cut(s) | 21, 216, 947, 1341, 1584 |
| GluI | GCNGC | 3 cut(s) | 423, 555, 1345 |
| GsuI | CTGGAG | 1 cut(s) | 95 |
| HaeIII | GGCC | 1 cut(s) | 668 |
| HapII | CCGG | 2 cut(s) | 750, 1146 |
| Hin1II | CATG | 7 cut(s) | 73, 401, 419, 1315, 1640, 1644, 1650 |
| HincII | GTYRAC | 1 cut(s) | 1624 |
| HindII | GTYRAC | 1 cut(s) | 1624 |
| HindIII | AAGCTT | 2 cut(s) | 518, 800 |
| HinfI | GANTC | 8 cut(s) | 52, 61, 505, 901, 928, 965, 1012, 1379 |
| HpaII | CCGG | 2 cut(s) | 750, 1146 |
| HphI | GGTGA | 1 cut(s) | 344 |
| Hpy166II | GTNNAC | 2 cut(s) | 697, 1624 |
| Hpy188I | TCNGA | 6 cut(s) | 82, 304, 373, 691, 970, 1606 |
| Hpy188III | TCNNGA | 5 cut(s) | 188, 196, 343, 445, 541 |
| Hpy8I | GTNNAC | 2 cut(s) | 697, 1624 |
| Hpy99I | CGWCG | 1 cut(s) | 1560 |
| HpyAV | CCTTC | 5 cut(s) | 812, 824, 912, 1225, 1528 |
| HpyCH4III | ACNGT | 2 cut(s) | 976, 1241 |
| HpyCH4IV | ACGT | 3 cut(s) | 268, 362, 1492 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 653, 674, 1142, 1414 |
| HpyF3I | CTNAG | 5 cut(s) | 81, 426, 443, 969, 1259 |
| HpySE526I | ACGT | 3 cut(s) | 268, 362, 1492 |
| Hsp92II | CATG | 7 cut(s) | 73, 401, 419, 1315, 1640, 1644, 1650 |
| Kzo9I | GATC | 5 cut(s) | 7, 184, 527, 1601, 1633 |
| LguI | GCTCTTC | 1 cut(s) | 760 |
| LmnI | GCTCC | 1 cut(s) | 435 |
| Lsp1109I | GCAGC | 3 cut(s) | 409, 541, 1331 |
| LweI | GCATC | 4 cut(s) | 189, 325, 670, 1404 |
| MaeI | CTAG | 5 cut(s) | 21, 216, 947, 1341, 1584 |
| MaeII | ACGT | 3 cut(s) | 268, 362, 1492 |
| MaeIII | GTNAC | 3 cut(s) | 179, 743, 1118 |
| MalI | GATC | 5 cut(s) | 9, 186, 529, 1603, 1635 |
| MboI | GATC | 5 cut(s) | 7, 184, 527, 1601, 1633 |
| MboII | GAAGA | 8 cut(s) | 104, 167, 329, 747, 1021, 1044, 1196, 1493 |
| MfeI | CAATTG | 2 cut(s) | 456, 1401 |
| MflI | RGATCY | 1 cut(s) | 527 |
| MhlI | GDGCHC | 1 cut(s) | 432 |
| MlyI | GAGTC | 2 cut(s) | 499, 1021 |
| MmeI | TCCRAC | 3 cut(s) | 747, 1045, 1475 |
| MnlI | CCTC | 9 cut(s) | 21, 763, 954, 1035, 1116, 1470, 1477, 1516, 1588 |
| Mph1103I | ATGCAT | 3 cut(s) | 71, 340, 1642 |
| MroXI | GAANNNNTTC | 1 cut(s) | 283 |
| MseI | TTAA | 6 cut(s) | 254, 570, 1206, 1386, 1449, 1653 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1645 |
| MspI | CCGG | 2 cut(s) | 750, 1146 |
| MspR9I | CCNGG | 3 cut(s) | 156, 750, 1393 |
| MunI | CAATTG | 2 cut(s) | 456, 1401 |
| Mva1269I | GAATGC | 1 cut(s) | 338 |
| MvaI | CCWGG | 2 cut(s) | 156, 1393 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 653, 674, 1142, 1414 |
| NciI | CCSGG | 1 cut(s) | 750 |
| NcoI | CCATGG | 1 cut(s) | 1311 |
| NdeI | CATATG | 3 cut(s) | 619, 953, 1615 |
| NdeII | GATC | 5 cut(s) | 7, 184, 527, 1601, 1633 |
| NlaIII | CATG | 7 cut(s) | 73, 401, 419, 1315, 1640, 1644, 1650 |
| NlaIV | GGNNCC | 4 cut(s) | 529, 688, 1276, 1325 |
| NsiI | ATGCAT | 3 cut(s) | 71, 340, 1642 |
| NspI | RCATGY | 1 cut(s) | 1644 |
| PciSI | GCTCTTC | 1 cut(s) | 760 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 184, 813 |
| PctI | GAATGC | 1 cut(s) | 338 |
| PdmI | GAANNNNTTC | 1 cut(s) | 283 |
| PfeI | GAWTC | 6 cut(s) | 52, 61, 901, 928, 965, 1379 |
| PfoI | TCCNGGA | 1 cut(s) | 1391 |
| PkrI | GCNGC | 3 cut(s) | 424, 556, 1346 |
| Ple19I | CGATCG | 1 cut(s) | 187 |
| PleI | GAGTC | 2 cut(s) | 499, 1020 |
| PpsI | GAGTC | 2 cut(s) | 499, 1020 |
| Psp124BI | GAGCTC | 1 cut(s) | 432 |
| Psp1406I | AACGTT | 1 cut(s) | 1492 |
| Psp6I | CCWGG | 2 cut(s) | 154, 1391 |
| PspGI | CCWGG | 2 cut(s) | 154, 1391 |
| PspN4I | GGNNCC | 4 cut(s) | 529, 688, 1276, 1325 |
| PspPI | GGNCC | 3 cut(s) | 666, 1435, 1497 |
| PstNI | CAGNNNCTG | 1 cut(s) | 904 |
| PsuI | RGATCY | 1 cut(s) | 527 |
| PvuI | CGATCG | 1 cut(s) | 187 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1645 |
| SacI | GAGCTC | 1 cut(s) | 432 |
| SapI | GCTCTTC | 1 cut(s) | 760 |
| SaqAI | TTAA | 6 cut(s) | 254, 570, 1206, 1386, 1449, 1653 |
| SatI | GCNGC | 3 cut(s) | 423, 555, 1345 |
| Sau3AI | GATC | 5 cut(s) | 7, 184, 527, 1601, 1633 |
| Sau96I | GGNCC | 3 cut(s) | 666, 1435, 1497 |
| SchI | GAGTC | 2 cut(s) | 499, 1021 |
| ScrFI | CCNGG | 3 cut(s) | 156, 750, 1393 |
| SduI | GDGCHC | 1 cut(s) | 432 |
| SfaNI | GCATC | 4 cut(s) | 189, 325, 670, 1404 |
| SinI | GGWCC | 2 cut(s) | 1435, 1497 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1645 |
| SmlI | CTYRAG | 1 cut(s) | 1026 |
| SmoI | CTYRAG | 1 cut(s) | 1026 |
| SsiI | CCGC | 2 cut(s) | 1252, 1466 |
| SspMI | CTAG | 5 cut(s) | 21, 216, 947, 1341, 1584 |
| SstI | GAGCTC | 1 cut(s) | 432 |
| StyD4I | CCNGG | 3 cut(s) | 154, 748, 1391 |
| StyI | CCWWGG | 4 cut(s) | 531, 587, 669, 1311 |
| TaaI | ACNGT | 2 cut(s) | 976, 1241 |
| TaiI | ACGT | 3 cut(s) | 271, 365, 1495 |
| TaqI | TCGA | 3 cut(s) | 1083, 1600, 1632 |
| TfiI | GAWTC | 6 cut(s) | 52, 61, 901, 928, 965, 1379 |
| Tru1I | TTAA | 6 cut(s) | 254, 570, 1206, 1386, 1449, 1653 |
| Tru9I | TTAA | 6 cut(s) | 254, 570, 1206, 1386, 1449, 1653 |
| TscAI | CASTG | 1 cut(s) | 294 |
| TseI | GCWGC | 3 cut(s) | 422, 554, 1344 |
| TspGWI | ACGGA | 1 cut(s) | 422 |
| TspRI | CASTG | 1 cut(s) | 294 |
| VpaK11BI | GGWCC | 2 cut(s) | 1435, 1497 |
| XceI | RCATGY | 1 cut(s) | 1644 |
| XmiI | GTMKAC | 1 cut(s) | 696 |
| XmnI | GAANNNNTTC | 1 cut(s) | 283 |
| XspI | CTAG | 5 cut(s) | 21, 216, 947, 1341, 1584 |
| Zsp2I | ATGCAT | 3 cut(s) | 71, 340, 1642 |