isoform X1
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 876 |
| AccI | GTMKAC | 1 cut(s) | 213 |
| AciI | CCGC | 2 cut(s) | 1097, 1203 |
| AclWI | GGATC | 3 cut(s) | 13, 507, 624 |
| AcsI | RAATTY | 3 cut(s) | 473, 853, 940 |
| AcuI | CTGAAG | 2 cut(s) | 351, 866 |
| AfaI | GTAC | 5 cut(s) | 121, 136, 647, 926, 1237 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1012 |
| AflII | CTTAAG | 1 cut(s) | 494 |
| AgsI | TTSAA | 5 cut(s) | 562, 700, 721, 777, 836 |
| AjnI | CCWGG | 1 cut(s) | 1178 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 839, 871 |
| AluBI | AGCT | 7 cut(s) | 77, 173, 190, 255, 844, 979, 1241 |
| AluI | AGCT | 7 cut(s) | 77, 173, 190, 255, 844, 979, 1241 |
| AlwI | GGATC | 3 cut(s) | 13, 507, 624 |
| AoxI | GGCC | 1 cut(s) | 1139 |
| ApeKI | GCWGC | 2 cut(s) | 976, 1108 |
| ApoI | RAATTY | 3 cut(s) | 473, 853, 940 |
| AseI | ATTAAT | 2 cut(s) | 744, 1047 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1154 |
| AsuC2I | CCSGG | 2 cut(s) | 827, 1134 |
| AsuHPI | GGTGA | 7 cut(s) | 176, 373, 602, 680, 841, 1111, 1195 |
| AsuII | TTCGAA | 1 cut(s) | 1067 |
| BaeGI | GKGCMC | 1 cut(s) | 827 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 885, 918 |
| BamHI | GGATCC | 1 cut(s) | 5 |
| BbsI | GAAGAC | 2 cut(s) | 719, 1132 |
| BbvI | GCAGC | 2 cut(s) | 988, 1120 |
| BccI | CCATC | 3 cut(s) | 448, 743, 1208 |
| BceAI | ACGGC | 1 cut(s) | 670 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1057, 1091 |
| BciT130I | CCWGG | 1 cut(s) | 1180 |
| BciVI | GTATCC | 1 cut(s) | 270 |
| BclI | TGATCA | 1 cut(s) | 1185 |
| BcnI | CCSGG | 2 cut(s) | 827, 1134 |
| BfaI | CTAG | 3 cut(s) | 408, 1122, 1143 |
| BfrI | CTTAAG | 1 cut(s) | 494 |
| BfuAI | ACCTGC | 1 cut(s) | 876 |
| BfuI | GTATCC | 1 cut(s) | 270 |
| BisI | GCNGC | 2 cut(s) | 977, 1109 |
| BlsI | GCNGC | 2 cut(s) | 978, 1110 |
| Bme1390I | CCNGG | 3 cut(s) | 827, 1134, 1180 |
| BmiI | GGNNCC | 1 cut(s) | 7 |
| BmrFI | CCNGG | 3 cut(s) | 827, 1134, 1180 |
| BmsI | GCATC | 3 cut(s) | 222, 787, 1084 |
| BpiI | GAAGAC | 2 cut(s) | 719, 1132 |
| BpmI | CTGGAG | 1 cut(s) | 632 |
| Bpu14I | TTCGAA | 1 cut(s) | 1067 |
| BpuEI | CTTGAG | 2 cut(s) | 338, 786 |
| BpuMI | CCSGG | 2 cut(s) | 827, 1134 |
| BsaJI | CCNNGG | 3 cut(s) | 9, 768, 1179 |
| BsaWI | WCCGGW | 1 cut(s) | 544 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 571, 601, 620, 650 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1012 |
| Bse1I | ACTGG | 2 cut(s) | 263, 638 |
| Bse3DI | GCAATG | 1 cut(s) | 913 |
| BseBI | CCWGG | 1 cut(s) | 1180 |
| BseDI | CCNNGG | 3 cut(s) | 9, 768, 1179 |
| BseGI | GGATG | 2 cut(s) | 112, 802 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1012 |
| BseMI | GCAATG | 1 cut(s) | 913 |
| BseMII | CTCAG | 4 cut(s) | 165, 200, 681, 807 |
| BseNI | ACTGG | 2 cut(s) | 263, 638 |
| BseRI | GAGGAG | 2 cut(s) | 370, 592 |
| BseSI | GKGCMC | 1 cut(s) | 827 |
| BseXI | GCAGC | 2 cut(s) | 988, 1120 |
| BshFI | GGCC | 1 cut(s) | 1141 |
| BsiSI | CCGG | 3 cut(s) | 545, 827, 1133 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1012 |
| BsnI | GGCC | 1 cut(s) | 1141 |
| Bsp119I | TTCGAA | 1 cut(s) | 1067 |
| Bsp1286I | GDGCHC | 1 cut(s) | 827 |
| Bsp1407I | TGTACA | 1 cut(s) | 1235 |
| Bsp143I | GATC | 6 cut(s) | 5, 84, 376, 499, 616, 1185 |
| Bsp19I | CCATGG | 1 cut(s) | 768 |
| BspACI | CCGC | 2 cut(s) | 1097, 1203 |
| BspANI | GGCC | 1 cut(s) | 1141 |
| BspCNI | CTCAG | 4 cut(s) | 166, 199, 682, 808 |
| BspLI | GGNNCC | 1 cut(s) | 7 |
| BspMI | ACCTGC | 1 cut(s) | 876 |
| BspPI | GGATC | 3 cut(s) | 13, 507, 624 |
| BspT104I | TTCGAA | 1 cut(s) | 1067 |
| BspTI | CTTAAG | 1 cut(s) | 494 |
| BsrDI | GCAATG | 1 cut(s) | 913 |
| BsrGI | TGTACA | 1 cut(s) | 1235 |
| BsrI | ACTGG | 2 cut(s) | 263, 638 |
| BssECI | CCNNGG | 3 cut(s) | 9, 768, 1179 |
| BssMI | GATC | 6 cut(s) | 5, 84, 376, 499, 616, 1185 |
| BssT1I | CCWWGG | 2 cut(s) | 9, 768 |
| Bst2UI | CCWGG | 1 cut(s) | 1180 |
| Bst4CI | ACNGT | 1 cut(s) | 124 |
| Bst6I | CTCTTC | 3 cut(s) | 327, 716, 1145 |
| BstAFI | CTTAAG | 1 cut(s) | 494 |
| BstAUI | TGTACA | 1 cut(s) | 1235 |
| BstBI | TTCGAA | 1 cut(s) | 1067 |
| BstC8I | GCNNGC | 1 cut(s) | 1172 |
| BstDEI | CTNAG | 4 cut(s) | 174, 186, 690, 816 |
| BstDSI | CCRYGG | 1 cut(s) | 768 |
| BstF5I | GGATG | 2 cut(s) | 112, 802 |
| BstKTI | GATC | 6 cut(s) | 8, 87, 379, 502, 619, 1188 |
| BstMBI | GATC | 6 cut(s) | 5, 84, 376, 499, 616, 1185 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 152, 779 |
| BstNI | CCWGG | 1 cut(s) | 1180 |
| BstSCI | CCNGG | 3 cut(s) | 825, 1132, 1178 |
| BstSLI | GKGCMC | 1 cut(s) | 827 |
| BstV1I | GCAGC | 2 cut(s) | 988, 1120 |
| BstV2I | GAAGAC | 2 cut(s) | 719, 1132 |
| BstX2I | RGATCY | 2 cut(s) | 5, 616 |
| BstYI | RGATCY | 2 cut(s) | 5, 616 |
| BsuI | GTATCC | 1 cut(s) | 270 |
| BsuRI | GGCC | 1 cut(s) | 1141 |
| BtgI | CCRYGG | 1 cut(s) | 768 |
| BtsCI | GGATG | 2 cut(s) | 112, 802 |
| BveI | ACCTGC | 1 cut(s) | 876 |
| Cac8I | GCNNGC | 1 cut(s) | 1172 |
| Csp6I | GTAC | 5 cut(s) | 120, 135, 646, 925, 1236 |
| CviAII | CATG | 8 cut(s) | 161, 383, 431, 769, 934, 993, 1001, 1079 |
| CviQI | GTAC | 5 cut(s) | 120, 135, 646, 925, 1236 |
| DdeI | CTNAG | 4 cut(s) | 174, 186, 690, 816 |
| DpnI | GATC | 6 cut(s) | 7, 86, 378, 501, 618, 1187 |
| DpnII | GATC | 6 cut(s) | 5, 84, 376, 499, 616, 1185 |
| Eam1104I | CTCTTC | 3 cut(s) | 327, 716, 1145 |
| EarI | CTCTTC | 3 cut(s) | 327, 716, 1145 |
| Eco130I | CCWWGG | 2 cut(s) | 9, 768 |
| Eco147I | AGGCCT | 1 cut(s) | 1141 |
| Eco57I | CTGAAG | 2 cut(s) | 351, 866 |
| EcoRII | CCWGG | 1 cut(s) | 1178 |
| EcoT14I | CCWWGG | 2 cut(s) | 9, 768 |
| ErhI | CCWWGG | 2 cut(s) | 9, 768 |
| FaeI | CATG | 8 cut(s) | 164, 386, 434, 772, 937, 996, 1004, 1082 |
| FatI | CATG | 8 cut(s) | 160, 382, 430, 768, 933, 992, 1000, 1078 |
| FbaI | TGATCA | 1 cut(s) | 1185 |
| FblI | GTMKAC | 1 cut(s) | 213 |
| Fnu4HI | GCNGC | 2 cut(s) | 977, 1109 |
| FokI | GGATG | 2 cut(s) | 119, 809 |
| Fsp4HI | GCNGC | 2 cut(s) | 977, 1109 |
| FspBI | CTAG | 3 cut(s) | 408, 1122, 1143 |
| GluI | GCNGC | 2 cut(s) | 977, 1109 |
| GsuI | CTGGAG | 1 cut(s) | 632 |
| HaeIII | GGCC | 1 cut(s) | 1141 |
| HapII | CCGG | 3 cut(s) | 545, 827, 1133 |
| Hin1II | CATG | 8 cut(s) | 164, 386, 434, 772, 937, 996, 1004, 1082 |
| HindIII | AAGCTT | 1 cut(s) | 253 |
| HinfI | GANTC | 7 cut(s) | 40, 49, 176, 284, 505, 692, 724 |
| HpaII | CCGG | 3 cut(s) | 545, 827, 1133 |
| HphI | GGTGA | 7 cut(s) | 176, 373, 602, 680, 841, 1111, 1195 |
| Hpy166II | GTNNAC | 1 cut(s) | 214 |
| Hpy188III | TCNNGA | 6 cut(s) | 88, 317, 611, 737, 803, 1025 |
| Hpy8I | GTNNAC | 1 cut(s) | 214 |
| HpyAV | CCTTC | 5 cut(s) | 578, 619, 841, 861, 1131 |
| HpyCH4III | ACNGT | 1 cut(s) | 124 |
| HpyCH4IV | ACGT | 1 cut(s) | 365 |
| HpyCH4V | TGCA | 4 cut(s) | 160, 341, 1078, 1108 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 152, 779 |
| HpyF3I | CTNAG | 4 cut(s) | 174, 186, 690, 816 |
| HpySE526I | ACGT | 1 cut(s) | 365 |
| Hsp92II | CATG | 8 cut(s) | 164, 386, 434, 772, 937, 996, 1004, 1082 |
| Ksp22I | TGATCA | 1 cut(s) | 1185 |
| Kzo9I | GATC | 6 cut(s) | 5, 84, 376, 499, 616, 1185 |
| LmnI | GCTCC | 2 cut(s) | 1167, 1246 |
| Lsp1109I | GCAGC | 2 cut(s) | 988, 1120 |
| LweI | GCATC | 3 cut(s) | 222, 787, 1084 |
| MaeI | CTAG | 3 cut(s) | 408, 1122, 1143 |
| MaeII | ACGT | 1 cut(s) | 365 |
| MaeIII | GTNAC | 3 cut(s) | 361, 590, 1217 |
| MalI | GATC | 6 cut(s) | 7, 86, 378, 501, 618, 1187 |
| MboI | GATC | 6 cut(s) | 5, 84, 376, 499, 616, 1185 |
| MboII | GAAGA | 6 cut(s) | 344, 611, 719, 733, 1137, 1162 |
| MfeI | CAATTG | 2 cut(s) | 66, 777 |
| MflI | RGATCY | 2 cut(s) | 5, 616 |
| MhlI | GDGCHC | 1 cut(s) | 827 |
| MlyI | GAGTC | 3 cut(s) | 185, 701, 733 |
| MmeI | TCCRAC | 1 cut(s) | 844 |
| MnlI | CCTC | 8 cut(s) | 313, 348, 351, 570, 607, 1069, 1122, 1146 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1154 |
| MseI | TTAA | 4 cut(s) | 495, 651, 744, 1047 |
| MslI | CAYNNNNRTG | 1 cut(s) | 165 |
| MspCI | CTTAAG | 1 cut(s) | 494 |
| MspI | CCGG | 3 cut(s) | 545, 827, 1133 |
| MspR9I | CCNGG | 3 cut(s) | 827, 1134, 1180 |
| MunI | CAATTG | 2 cut(s) | 66, 777 |
| MvaI | CCWGG | 1 cut(s) | 1180 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 152, 779 |
| NciI | CCSGG | 2 cut(s) | 827, 1134 |
| NcoI | CCATGG | 1 cut(s) | 768 |
| NdeII | GATC | 6 cut(s) | 5, 84, 376, 499, 616, 1185 |
| NlaIII | CATG | 8 cut(s) | 164, 386, 434, 772, 937, 996, 1004, 1082 |
| NlaIV | GGNNCC | 1 cut(s) | 7 |
| NmuCI | GTSAC | 3 cut(s) | 361, 590, 1217 |
| NspV | TTCGAA | 1 cut(s) | 1067 |
| PceI | AGGCCT | 1 cut(s) | 1141 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1154 |
| PfeI | GAWTC | 4 cut(s) | 40, 49, 284, 505 |
| PkrI | GCNGC | 2 cut(s) | 978, 1110 |
| PleI | GAGTC | 3 cut(s) | 184, 700, 732 |
| PpsI | GAGTC | 3 cut(s) | 184, 700, 732 |
| PshBI | ATTAAT | 2 cut(s) | 744, 1047 |
| Psp6I | CCWGG | 1 cut(s) | 1178 |
| PspGI | CCWGG | 1 cut(s) | 1178 |
| PspN4I | GGNNCC | 1 cut(s) | 7 |
| PsuI | RGATCY | 2 cut(s) | 5, 616 |
| RsaI | GTAC | 5 cut(s) | 121, 136, 647, 926, 1237 |
| RsaNI | GTAC | 5 cut(s) | 120, 135, 646, 925, 1236 |
| RseI | CAYNNNNRTG | 1 cut(s) | 165 |
| SaqAI | TTAA | 4 cut(s) | 495, 651, 744, 1047 |
| SatI | GCNGC | 2 cut(s) | 977, 1109 |
| Sau3AI | GATC | 6 cut(s) | 5, 84, 376, 499, 616, 1185 |
| SchI | GAGTC | 3 cut(s) | 185, 701, 733 |
| ScrFI | CCNGG | 3 cut(s) | 827, 1134, 1180 |
| SduI | GDGCHC | 1 cut(s) | 827 |
| SfaNI | GCATC | 3 cut(s) | 222, 787, 1084 |
| SfuI | TTCGAA | 1 cut(s) | 1067 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 165 |
| SmlI | CTYRAG | 3 cut(s) | 317, 494, 801 |
| SmoI | CTYRAG | 3 cut(s) | 317, 494, 801 |
| SseBI | AGGCCT | 1 cut(s) | 1141 |
| SsiI | CCGC | 2 cut(s) | 1097, 1203 |
| SspI | AATATT | 1 cut(s) | 573 |
| SspMI | CTAG | 3 cut(s) | 408, 1122, 1143 |
| StuI | AGGCCT | 1 cut(s) | 1141 |
| StyD4I | CCNGG | 3 cut(s) | 825, 1132, 1178 |
| StyI | CCWWGG | 2 cut(s) | 9, 768 |
| TaaI | ACNGT | 1 cut(s) | 124 |
| TaiI | ACGT | 1 cut(s) | 368 |
| TaqI | TCGA | 3 cut(s) | 282, 1024, 1067 |
| TatI | WGTACW | 2 cut(s) | 924, 1235 |
| TfiI | GAWTC | 4 cut(s) | 40, 49, 284, 505 |
| Tru1I | TTAA | 4 cut(s) | 495, 651, 744, 1047 |
| Tru9I | TTAA | 4 cut(s) | 495, 651, 744, 1047 |
| TseFI | GTSAC | 3 cut(s) | 361, 590, 1217 |
| TseI | GCWGC | 2 cut(s) | 976, 1108 |
| Tsp45I | GTSAC | 3 cut(s) | 361, 590, 1217 |
| TspDTI | ATGAA | 6 cut(s) | 183, 216, 231, 358, 902, 921 |
| TspGWI | ACGGA | 1 cut(s) | 152 |
| Vha464I | CTTAAG | 1 cut(s) | 494 |
| VspI | ATTAAT | 2 cut(s) | 744, 1047 |
| XapI | RAATTY | 3 cut(s) | 473, 853, 940 |
| XmiI | GTMKAC | 1 cut(s) | 213 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1154 |
| XspI | CTAG | 3 cut(s) | 408, 1122, 1143 |