isoform X1
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1539 |
| Acc36I | ACCTGC | 1 cut(s) | 1539 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1124, 1922 |
| AccBSI | CCGCTC | 1 cut(s) | 2158 |
| AccI | GTMKAC | 1 cut(s) | 2135 |
| AciI | CCGC | 8 cut(s) | 82, 739, 820, 1759, 1930, 1943, 2123, 2158 |
| AclI | AACGTT | 2 cut(s) | 124, 453 |
| AcoI | YGGCCR | 1 cut(s) | 1913 |
| AcsI | RAATTY | 2 cut(s) | 670, 1264 |
| AcuI | CTGAAG | 5 cut(s) | 669, 993, 1170, 1395, 1664 |
| AfaI | GTAC | 2 cut(s) | 1250, 1968 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1124, 1922, 1939 |
| AflII | CTTAAG | 1 cut(s) | 74 |
| AflIII | ACRYGT | 1 cut(s) | 1699 |
| AjnI | CCWGG | 1 cut(s) | 939 |
| AluBI | AGCT | 9 cut(s) | 73, 685, 712, 793, 874, 1475, 1498, 1778, 2095 |
| AluI | AGCT | 9 cut(s) | 73, 685, 712, 793, 874, 1475, 1498, 1778, 2095 |
| Alw21I | GWGCWC | 2 cut(s) | 918, 2017 |
| Alw26I | GTCTC | 1 cut(s) | 1877 |
| Ama87I | CYCGRG | 1 cut(s) | 1974 |
| AoxI | GGCC | 4 cut(s) | 1760, 1913, 1927, 2310 |
| ApeKI | GCWGC | 9 cut(s) | 473, 476, 533, 1511, 2047, 2077, 2089, 2092, 2303 |
| ApoI | RAATTY | 2 cut(s) | 670, 1264 |
| AseI | ATTAAT | 1 cut(s) | 1014 |
| AspLEI | GCGC | 1 cut(s) | 1548 |
| AspS9I | GGNCC | 2 cut(s) | 1093, 1828 |
| AsuC2I | CCSGG | 2 cut(s) | 1975, 1976 |
| AsuHPI | GGTGA | 4 cut(s) | 1139, 1691, 1759, 2052 |
| AsuII | TTCGAA | 2 cut(s) | 142, 2233 |
| AsuNHI | GCTAGC | 1 cut(s) | 265 |
| AvaI | CYCGRG | 1 cut(s) | 1974 |
| AvaII | GGWCC | 2 cut(s) | 1093, 1828 |
| AxyI | CCTNAGG | 1 cut(s) | 1959 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1437, 1470 |
| BalI | TGGCCA | 1 cut(s) | 1915 |
| BamHI | GGATCC | 4 cut(s) | 697, 724, 778, 805 |
| BanII | GRGCYC | 2 cut(s) | 735, 816 |
| BbsI | GAAGAC | 1 cut(s) | 665 |
| Bbv12I | GWGCWC | 2 cut(s) | 918, 2017 |
| BbvI | GCAGC | 9 cut(s) | 485, 488, 520, 1523, 2059, 2089, 2101, 2104, 2315 |
| BccI | CCATC | 5 cut(s) | 425, 1081, 1105, 1720, 1819 |
| BceAI | ACGGC | 2 cut(s) | 896, 1862 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 908, 942 |
| BciT130I | CCWGG | 1 cut(s) | 941 |
| BciVI | GTATCC | 1 cut(s) | 1438 |
| BclI | TGATCA | 4 cut(s) | 40, 117, 1051, 1747 |
| BcnI | CCSGG | 2 cut(s) | 1975, 1976 |
| BcoDI | GTCTC | 1 cut(s) | 1877 |
| BfaI | CTAG | 2 cut(s) | 266, 686 |
| BfmI | CTRYAG | 2 cut(s) | 417, 2084 |
| BfrI | CTTAAG | 1 cut(s) | 74 |
| BfuAI | ACCTGC | 1 cut(s) | 1539 |
| BfuI | GTATCC | 1 cut(s) | 1438 |
| Bme1390I | CCNGG | 3 cut(s) | 941, 1975, 1976 |
| Bme18I | GGWCC | 2 cut(s) | 1093, 1828 |
| BmeT110I | CYCGRG | 1 cut(s) | 1974 |
| BmgT120I | GGNCC | 2 cut(s) | 1093, 1828 |
| BmiI | GGNNCC | 5 cut(s) | 699, 726, 780, 807, 1095 |
| BmrFI | CCNGG | 3 cut(s) | 941, 1975, 1976 |
| BmrI | ACTGGG | 4 cut(s) | 757, 838, 1112, 1812 |
| BmsI | GCATC | 7 cut(s) | 394, 520, 883, 898, 1135, 1181, 2059 |
| BmtI | GCTAGC | 1 cut(s) | 269 |
| BmuI | ACTGGG | 4 cut(s) | 757, 838, 1112, 1812 |
| BpiI | GAAGAC | 1 cut(s) | 665 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1917, 1949 |
| BpmI | CTGGAG | 4 cut(s) | 734, 815, 896, 1302 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2322 |
| Bpu14I | TTCGAA | 2 cut(s) | 142, 2233 |
| BpuMI | CCSGG | 2 cut(s) | 1975, 1976 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1134 |
| BsaJI | CCNNGG | 6 cut(s) | 96, 903, 1692, 1878, 1974, 2252 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1347, 1377 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1124, 1922, 1939 |
| Bse1I | ACTGG | 5 cut(s) | 763, 844, 1104, 1118, 1807 |
| Bse21I | CCTNAGG | 1 cut(s) | 1959 |
| Bse3DI | GCAATG | 1 cut(s) | 1843 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1134 |
| BseBI | CCWGG | 1 cut(s) | 941 |
| BseDI | CCNNGG | 6 cut(s) | 96, 903, 1692, 1878, 1974, 2252 |
| BseJI | GATNNNNATC | 1 cut(s) | 1134 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1124, 1922, 1939 |
| BseMI | GCAATG | 1 cut(s) | 1843 |
| BseNI | ACTGG | 5 cut(s) | 763, 844, 1104, 1118, 1807 |
| BseRI | GAGGAG | 2 cut(s) | 563, 2172 |
| BseXI | GCAGC | 9 cut(s) | 485, 488, 520, 1523, 2059, 2089, 2101, 2104, 2315 |
| BseYI | CCCAGC | 4 cut(s) | 708, 789, 870, 2146 |
| BsgI | GTGCAG | 1 cut(s) | 492 |
| BshFI | GGCC | 4 cut(s) | 1762, 1915, 1929, 2312 |
| BsiHKAI | GWGCWC | 2 cut(s) | 918, 2017 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1974 |
| BsiSI | CCGG | 2 cut(s) | 1082, 1975 |
| BslFI | GGGAC | 2 cut(s) | 1100, 1674 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1124, 1922, 1939 |
| BsmAI | GTCTC | 1 cut(s) | 1877 |
| BsmFI | GGGAC | 2 cut(s) | 1100, 1674 |
| BsmI | GAATGC | 2 cut(s) | 235, 1897 |
| BsnI | GGCC | 4 cut(s) | 1762, 1915, 1929, 2312 |
| BsoBI | CYCGRG | 1 cut(s) | 1974 |
| Bsp119I | TTCGAA | 2 cut(s) | 142, 2233 |
| Bsp1286I | GDGCHC | 4 cut(s) | 735, 816, 918, 2017 |
| BspACI | CCGC | 8 cut(s) | 82, 739, 820, 1759, 1930, 1943, 2123, 2158 |
| BspANI | GGCC | 4 cut(s) | 1762, 1915, 1929, 2312 |
| BspLI | GGNNCC | 5 cut(s) | 699, 726, 780, 807, 1095 |
| BspMI | ACCTGC | 1 cut(s) | 1539 |
| BspOI | GCTAGC | 1 cut(s) | 269 |
| BspQI | GCTCTTC | 3 cut(s) | 63, 1146, 1482 |
| BspT104I | TTCGAA | 2 cut(s) | 142, 2233 |
| BspTI | CTTAAG | 1 cut(s) | 74 |
| BsrBI | CCGCTC | 1 cut(s) | 2158 |
| BsrDI | GCAATG | 1 cut(s) | 1843 |
| BsrI | ACTGG | 5 cut(s) | 763, 844, 1104, 1118, 1807 |
| BssECI | CCNNGG | 6 cut(s) | 96, 903, 1692, 1878, 1974, 2252 |
| BssT1I | CCWWGG | 3 cut(s) | 96, 903, 1692 |
| Bst2UI | CCWGG | 1 cut(s) | 941 |
| Bst4CI | ACNGT | 7 cut(s) | 574, 586, 592, 961, 1006, 1316, 1911 |
| Bst6I | CTCTTC | 6 cut(s) | 63, 495, 928, 1146, 1293, 1482 |
| BstAFI | CTTAAG | 1 cut(s) | 74 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 404, 2300 |
| BstBI | TTCGAA | 2 cut(s) | 142, 2233 |
| BstC8I | GCNNGC | 2 cut(s) | 267, 1533 |
| BstDSI | CCRYGG | 1 cut(s) | 1878 |
| BstHHI | GCGC | 1 cut(s) | 1548 |
| BstMAI | GTCTC | 1 cut(s) | 1877 |
| BstNI | CCWGG | 1 cut(s) | 941 |
| BstNSI | RCATGY | 1 cut(s) | 398 |
| BstSCI | CCNGG | 3 cut(s) | 939, 1973, 1974 |
| BstSFI | CTRYAG | 2 cut(s) | 417, 2084 |
| BstV1I | GCAGC | 9 cut(s) | 485, 488, 520, 1523, 2059, 2089, 2101, 2104, 2315 |
| BstV2I | GAAGAC | 1 cut(s) | 665 |
| BstX2I | RGATCY | 5 cut(s) | 697, 724, 778, 805, 2256 |
| BstYI | RGATCY | 5 cut(s) | 697, 724, 778, 805, 2256 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1959 |
| BsuI | GTATCC | 1 cut(s) | 1438 |
| BsuRI | GGCC | 4 cut(s) | 1762, 1915, 1929, 2312 |
| BtgI | CCRYGG | 1 cut(s) | 1878 |
| BtgZI | GCGATG | 1 cut(s) | 1698 |
| BtsI | GCAGTG | 1 cut(s) | 405 |
| BtsIMutI | CAGTG | 8 cut(s) | 50, 405, 582, 594, 645, 957, 1111, 1916 |
| BveI | ACCTGC | 1 cut(s) | 1539 |
| Cac8I | GCNNGC | 2 cut(s) | 267, 1533 |
| CfoI | GCGC | 1 cut(s) | 1548 |
| Cfr13I | GGNCC | 2 cut(s) | 1093, 1828 |
| Cfr9I | CCCGGG | 1 cut(s) | 1974 |
| CsiI | ACCWGGT | 1 cut(s) | 939 |
| Csp6I | GTAC | 2 cut(s) | 1249, 1967 |
| CviAII | CATG | 6 cut(s) | 395, 527, 736, 817, 1055, 1403 |
| CviQI | GTAC | 2 cut(s) | 1249, 1967 |
| EaeI | YGGCCR | 1 cut(s) | 1913 |
| Eam1104I | CTCTTC | 6 cut(s) | 63, 495, 928, 1146, 1293, 1482 |
| EarI | CTCTTC | 6 cut(s) | 63, 495, 928, 1146, 1293, 1482 |
| EciI | GGCGGA | 3 cut(s) | 97, 1958, 2112 |
| Eco130I | CCWWGG | 3 cut(s) | 96, 903, 1692 |
| Eco24I | GRGCYC | 2 cut(s) | 735, 816 |
| Eco47I | GGWCC | 2 cut(s) | 1093, 1828 |
| Eco57I | CTGAAG | 5 cut(s) | 669, 993, 1170, 1395, 1664 |
| Eco81I | CCTNAGG | 1 cut(s) | 1959 |
| Eco88I | CYCGRG | 1 cut(s) | 1974 |
| EcoRI | GAATTC | 1 cut(s) | 670 |
| EcoRII | CCWGG | 1 cut(s) | 939 |
| EcoT14I | CCWWGG | 3 cut(s) | 96, 903, 1692 |
| EcoT38I | GRGCYC | 2 cut(s) | 735, 816 |
| ErhI | CCWWGG | 3 cut(s) | 96, 903, 1692 |
| FaeI | CATG | 6 cut(s) | 398, 530, 739, 820, 1058, 1406 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 57, 89, 1637, 1669, 1776, 1808 |
| FaqI | GGGAC | 2 cut(s) | 1100, 1674 |
| FatI | CATG | 6 cut(s) | 394, 526, 735, 816, 1054, 1402 |
| FauI | CCCGC | 2 cut(s) | 732, 813 |
| FbaI | TGATCA | 4 cut(s) | 40, 117, 1051, 1747 |
| FblI | GTMKAC | 1 cut(s) | 2135 |
| FriOI | GRGCYC | 2 cut(s) | 735, 816 |
| FspBI | CTAG | 2 cut(s) | 266, 686 |
| GlaI | GCGC | 1 cut(s) | 1547 |
| GsaI | CCCAGC | 4 cut(s) | 712, 793, 874, 2150 |
| GsuI | CTGGAG | 4 cut(s) | 734, 815, 896, 1302 |
| HaeIII | GGCC | 4 cut(s) | 1762, 1915, 1929, 2312 |
| HapII | CCGG | 2 cut(s) | 1082, 1975 |
| HhaI | GCGC | 1 cut(s) | 1548 |
| Hin1II | CATG | 6 cut(s) | 398, 530, 739, 820, 1058, 1406 |
| Hin6I | GCGC | 1 cut(s) | 1546 |
| HinP1I | GCGC | 1 cut(s) | 1546 |
| HindIII | AAGCTT | 1 cut(s) | 1496 |
| HpaII | CCGG | 2 cut(s) | 1082, 1975 |
| HphI | GGTGA | 4 cut(s) | 1139, 1691, 1759, 2052 |
| Hpy166II | GTNNAC | 5 cut(s) | 638, 979, 1093, 1319, 2136 |
| Hpy188III | TCNNGA | 8 cut(s) | 728, 809, 830, 1281, 1577, 1659, 1822, 1961 |
| Hpy8I | GTNNAC | 5 cut(s) | 638, 979, 1093, 1319, 2136 |
| HpyAV | CCTTC | 7 cut(s) | 43, 100, 352, 1801, 2067, 2118, 2150 |
| HpyCH4III | ACNGT | 7 cut(s) | 574, 586, 592, 961, 1006, 1316, 1911 |
| HpyCH4IV | ACGT | 3 cut(s) | 124, 453, 1699 |
| HpyCH4V | TGCA | 6 cut(s) | 398, 473, 1211, 1388, 1783, 2303 |
| HpySE526I | ACGT | 3 cut(s) | 124, 453, 1699 |
| Hsp92II | CATG | 6 cut(s) | 398, 530, 739, 820, 1058, 1406 |
| HspAI | GCGC | 1 cut(s) | 1546 |
| Ksp22I | TGATCA | 4 cut(s) | 40, 117, 1051, 1747 |
| LguI | GCTCTTC | 3 cut(s) | 63, 1146, 1482 |
| LmnI | GCTCC | 3 cut(s) | 388, 2020, 2029 |
| Lsp1109I | GCAGC | 9 cut(s) | 485, 488, 520, 1523, 2059, 2089, 2101, 2104, 2315 |
| LweI | GCATC | 7 cut(s) | 394, 520, 883, 898, 1135, 1181, 2059 |
| MabI | ACCWGGT | 1 cut(s) | 939 |
| MaeI | CTAG | 2 cut(s) | 266, 686 |
| MaeII | ACGT | 3 cut(s) | 124, 453, 1699 |
| MaeIII | GTNAC | 8 cut(s) | 52, 586, 592, 1519, 1649, 1810, 1852, 2212 |
| MbiI | CCGCTC | 1 cut(s) | 2158 |
| MfeI | CAATTG | 3 cut(s) | 36, 1674, 2208 |
| MflI | RGATCY | 5 cut(s) | 697, 724, 778, 805, 2256 |
| MhlI | GDGCHC | 4 cut(s) | 735, 816, 918, 2017 |
| MlsI | TGGCCA | 1 cut(s) | 1915 |
| MluNI | TGGCCA | 1 cut(s) | 1915 |
| MlyI | GAGTC | 4 cut(s) | 754, 835, 914, 1987 |
| MmeI | TCCRAC | 3 cut(s) | 523, 747, 828 |
| Mox20I | TGGCCA | 1 cut(s) | 1915 |
| MscI | TGGCCA | 1 cut(s) | 1915 |
| MseI | TTAA | 8 cut(s) | 75, 375, 1014, 1077, 1262, 1500, 1739, 1836 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1407 |
| Msp20I | TGGCCA | 1 cut(s) | 1915 |
| MspA1I | CMGCKG | 3 cut(s) | 712, 793, 874 |
| MspCI | CTTAAG | 1 cut(s) | 74 |
| MspI | CCGG | 2 cut(s) | 1082, 1975 |
| MspR9I | CCNGG | 3 cut(s) | 941, 1975, 1976 |
| MunI | CAATTG | 3 cut(s) | 36, 1674, 2208 |
| Mva1269I | GAATGC | 2 cut(s) | 235, 1897 |
| MvaI | CCWGG | 1 cut(s) | 941 |
| NciI | CCSGG | 2 cut(s) | 1975, 1976 |
| NheI | GCTAGC | 1 cut(s) | 265 |
| NlaIII | CATG | 6 cut(s) | 398, 530, 739, 820, 1058, 1406 |
| NlaIV | GGNNCC | 5 cut(s) | 699, 726, 780, 807, 1095 |
| NmeAIII | GCCGAG | 4 cut(s) | 187, 211, 235, 331 |
| NmuCI | GTSAC | 3 cut(s) | 592, 1519, 2212 |
| NspI | RCATGY | 1 cut(s) | 398 |
| NspV | TTCGAA | 2 cut(s) | 142, 2233 |
| PaqCI | CACCTGC | 1 cut(s) | 1539 |
| PciSI | GCTCTTC | 3 cut(s) | 63, 1146, 1482 |
| PctI | GAATGC | 2 cut(s) | 235, 1897 |
| PfeI | GAWTC | 7 cut(s) | 484, 833, 1130, 1289, 1328, 1465, 1984 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1124, 1922 |
| PleI | GAGTC | 4 cut(s) | 753, 834, 914, 1987 |
| PpsI | GAGTC | 4 cut(s) | 753, 834, 914, 1987 |
| PshBI | ATTAAT | 1 cut(s) | 1014 |
| Psp1406I | AACGTT | 2 cut(s) | 124, 453 |
| Psp6I | CCWGG | 1 cut(s) | 939 |
| PspFI | CCCAGC | 4 cut(s) | 708, 789, 870, 2146 |
| PspGI | CCWGG | 1 cut(s) | 939 |
| PspN4I | GGNNCC | 5 cut(s) | 699, 726, 780, 807, 1095 |
| PspPI | GGNCC | 2 cut(s) | 1093, 1828 |
| PsuI | RGATCY | 5 cut(s) | 697, 724, 778, 805, 2256 |
| PvuII | CAGCTG | 3 cut(s) | 712, 793, 874 |
| RsaI | GTAC | 2 cut(s) | 1250, 1968 |
| RsaNI | GTAC | 2 cut(s) | 1249, 1967 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1407 |
| SapI | GCTCTTC | 3 cut(s) | 63, 1146, 1482 |
| SaqAI | TTAA | 8 cut(s) | 75, 375, 1014, 1077, 1262, 1500, 1739, 1836 |
| Sau96I | GGNCC | 2 cut(s) | 1093, 1828 |
| SchI | GAGTC | 4 cut(s) | 754, 835, 914, 1987 |
| ScrFI | CCNGG | 3 cut(s) | 941, 1975, 1976 |
| SduI | GDGCHC | 4 cut(s) | 735, 816, 918, 2017 |
| SexAI | ACCWGGT | 1 cut(s) | 939 |
| SfaNI | GCATC | 7 cut(s) | 394, 520, 883, 898, 1135, 1181, 2059 |
| SfcI | CTRYAG | 2 cut(s) | 417, 2084 |
| SfuI | TTCGAA | 2 cut(s) | 142, 2233 |
| SinI | GGWCC | 2 cut(s) | 1093, 1828 |
| SmaI | CCCGGG | 1 cut(s) | 1976 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1407 |
| SmlI | CTYRAG | 1 cut(s) | 74 |
| SmoI | CTYRAG | 1 cut(s) | 74 |
| SsiI | CCGC | 8 cut(s) | 82, 739, 820, 1759, 1930, 1943, 2123, 2158 |
| SspI | AATATT | 1 cut(s) | 614 |
| SspMI | CTAG | 2 cut(s) | 266, 686 |
| StyD4I | CCNGG | 3 cut(s) | 939, 1973, 1974 |
| StyI | CCWWGG | 3 cut(s) | 96, 903, 1692 |
| TaaI | ACNGT | 7 cut(s) | 574, 586, 592, 961, 1006, 1316, 1911 |
| TaiI | ACGT | 3 cut(s) | 127, 456, 1702 |
| TaqI | TCGA | 8 cut(s) | 31, 142, 195, 243, 498, 918, 1658, 2233 |
| TatI | WGTACW | 1 cut(s) | 1966 |
| TauI | GCSGC | 3 cut(s) | 1762, 1932, 2161 |
| TfiI | GAWTC | 7 cut(s) | 484, 833, 1130, 1289, 1328, 1465, 1984 |
| Tru1I | TTAA | 8 cut(s) | 75, 375, 1014, 1077, 1262, 1500, 1739, 1836 |
| Tru9I | TTAA | 8 cut(s) | 75, 375, 1014, 1077, 1262, 1500, 1739, 1836 |
| TscAI | CASTG | 8 cut(s) | 50, 405, 589, 601, 652, 964, 1111, 1916 |
| TseFI | GTSAC | 3 cut(s) | 592, 1519, 2212 |
| TseI | GCWGC | 9 cut(s) | 473, 476, 533, 1511, 2047, 2077, 2089, 2092, 2303 |
| Tsp45I | GTSAC | 3 cut(s) | 592, 1519, 2212 |
| TspDTI | ATGAA | 3 cut(s) | 415, 1032, 1851 |
| TspGWI | ACGGA | 1 cut(s) | 1903 |
| TspMI | CCCGGG | 1 cut(s) | 1974 |
| TspRI | CASTG | 8 cut(s) | 50, 405, 589, 601, 652, 964, 1111, 1916 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1124, 1922 |
| Vha464I | CTTAAG | 1 cut(s) | 74 |
| VpaK11BI | GGWCC | 2 cut(s) | 1093, 1828 |
| VspI | ATTAAT | 1 cut(s) | 1014 |
| XapI | RAATTY | 2 cut(s) | 670, 1264 |
| XceI | RCATGY | 1 cut(s) | 398 |
| XmaI | CCCGGG | 1 cut(s) | 1974 |
| XmiI | GTMKAC | 1 cut(s) | 2135 |
| XspI | CTAG | 2 cut(s) | 266, 686 |