Rw6G001420

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000043
Physical Location & Seq
Reverse (-)
2194743 .. 2197140
2398 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G001420.1

Sequence Viewer

Length: 2199 bp
ATGGATGCAGAACCTTATGCGAGGTGCACGTATATGTTTGAGACGATCATGTTCATTCTTGATATGAAGCATACGTTTAATGATATTGTGAGGGAGGTCTCTATCGGTTTTAATCATTTGAATCTTGGTTCATTCAACTTGAGGTACTCTTTCCCTGGATATAAAAGCTGTGTGTTATCAAGTGATATGGATGTAAAACTGATGTTTAGGTGTATGTTTGATTTCAAATTGAATTCTGTTGATATTTTGGTGAGGGATTCTAATGGGAGCACCATTTTGGTGCCTTATTGTGGTGGGAGTAGTAGTTCTACTTCTGCAACAACATCTTTGGATGATGTTTCATGTGCTTCTTCATGTTTGTCAGTGGGTTCAAGCAATATGATTGATGCTAGTGAATACTTGGGGTGTTATAGGCCAGAGGCTCCAAAGAGTTATCTTACTCATGAGTGGCAGGGCTTTATAAGGCATAAGGATCAAAAGTTCGAAGGGGGGGTGTTAGAATTTAGAGAAAAGTTGACCAAGTTTGCTATTGAAACTGGTTTTCTTTTTAAGTACACACGGAATACCTCAAGTCGTGTTATTGCAGAGTGTGCTAAGAGATATTCTGATGGTTGTCAATGGTCTATTCGCGCTTTGAAGAACAAGGTGAATGGCTTTTTCTACATAAAGAAGTTGGATAATGTTCACACATGCAAAGGAGTTCTTAGGCAGCAAAAGAGTAAGCTTTTGGGGTCTCATGTTGTGAAATCGGAGATTGCTAATGAGTTGAAGTCCAATCCTCAACTCAAGCCTAAAGAGATTGTGTCTCGTTTCAAGCATTCTTTTGGTTTAGATGTGTCTTATAGGACTGCTTGGTATGGGAAGGAGTTGGCTAGAAAAGCTGTCCATGGTCATGATGGTGACTCATATTCTCAGCTGCTTTGGTATCGTGATGCTATTTTATCTAGTAATCCGGGCTCTTATTGCATATTGGAAACTGATCCTTTAAGTAATCGTTTTGAACGTTTCTTCATTTGTTTTTCTGGTTGCATTGAGGGCTTTAAGTCATGCATTCCGCTTCTGTTTGTGGATGCTGCTCATTTGAAGAGCAAGTATAAGGGATACATGCTCTGTGCTACTGGAAAGAATGGAAACCAAGAGTTCTTCCCCTTTGCATTTGCAGTTGTAGATTCTGAAAATCATGCGAATTGGGATTGGTTTTTTGATCATCTATATAACATCTTGTCTCCGCAAGGTAGAAATGTGACTTTTGTTACTGATCGACACAGCGGACTGTTGAATGCTGTTGTCAGGGTATTTCCAGATTCTCCTCATTCATACTGCTACTATCACCTTAAGGAGAATGTTAGAGGTGTGTACCGAAAGCAATCTGGAAATTATTTTGTTGACAAGATTGTGGAGGAATTTATGAAGGTTGCTTATTCACCTACCTTAGCAAGCTATAACTTCAACTTGCACAACTTGAAGAAAGAAGGTGGTCCGCCTATTGAAGAGTTTCTGCGATCTTTGCCGTTGGAAAAGTGGTGCAATGCATTTTTCAAAGGAAACAGGTATGGTGAAATGGCAAATAGTATTGCCGAGTCATTTAACAATTGGACTAGAGATTTGCGTGAGCTTCCTATATTTGAGATGTTTGAAGGCTTAAGGGTTAAGGTTATGGAGAATATGTCTGAGAGGAAGGTTGCATCCAAGAGGTGGACCACTATTTTGTGTCCTCCAATGGAGGCTTTGTTGAAGAAATCAATGGATATTGGGCGGCATTGGGCTGTTAGTATGTCTAGTGAGACTGTTTTTGAAGTTCATTCAGATAAATCAGTGGCGGTTGATCTTGGGAATAACACTTGCTCTTGCCGTCAATGGCAAATTAATTCATTCCCATGTTCACATGCTCTTGCTGCAATCCAAAAGGTTAGAGTGGAACCTGTGTATAGTTACATTGAGCCGTTCTACACCTGTCAAAGCTACAGGGATTCCTACGCACATGGTATTCATCCTATACCAAATATGGAGAAGTTTTATGAAGATGCAGCTAGTTCAACTTCTGTTGTTAAGCCTCCATTGGTTAGGAGGCCATCCGGCCGGCCAAAATCTGTTCGAATGAAGTCTGCAGCACAAGGAGGCACAAGGAGGCGTATCAAATGTGGCCGGTGTGGTGAGTTGGGGCGCCACAACAAGCTAACGTGGACTGCACCAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

732

Amino Acids

83.63

Weight (kDa)

9.01

Isoelectric Point (pI)

39.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 159 - 221 2.6e-09 MuDR family transposase
Transposase_mut PF00872 351 - 463 4.4e-06 Transposase, Mutator family
MULE PF10551 354 - 448 8.1e-21 MULE transposase domain
SWIM PF04434 608 - 636 3.7e-09 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000043)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27871 FvH4_1g29590 FvH4_1g29591 FvH4_1g29862 FvH4_2g00085 FvH4_2g02783 FvH4_2g02910 FvH4_2g18181 FvH4_2g24333 FvH4_3g06732 FvH4_3g17131 FvH4_3g20061 FvH4_3g20062 FvH4_3g24441 FvH4_3g24443 FvH4_3g24443 FvH4_3g24500 FvH4_3g24740 FvH4_3g25230 FvH4_3g26060 FvH4_3g27583 FvH4_3g32421 FvH4_3g35812 FvH4_3g38841 FvH4_3g40971 FvH4_3g44613 FvH4_3g44614 FvH4_3g44615 FvH4_4g04920 FvH4_4g07822 FvH4_4g08151 FvH4_4g08160 FvH4_4g08531 FvH4_4g09200 FvH4_4g09692 FvH4_4g10062 FvH4_4g10530 FvH4_5g03091 FvH4_5g03092 FvH4_5g06862 FvH4_5g06863 FvH4_5g07920 FvH4_5g17871 FvH4_5g17872 FvH4_5g23321 FvH4_5g24281 FvH4_5g24391 FvH4_5g28463 FvH4_5g34083 FvH4_6g06701 FvH4_6g20107 FvH4_6g20143 FvH4_6g22012 FvH4_6g22551 FvH4_6g31341 FvH4_6g33561 FvH4_6g33592 FvH4_6g34232 FvH4_6g34233 FvH4_6g37972 FvH4_6g37972 FvH4_6g37972 FvH4_6g39191 FvH4_6g39681 FvH4_6g45872 FvH4_7g01581 FvH4_7g02154 FvH4_7g03472 FvH4_7g07292 FvH4_7g07293 FvH4_7g20282 FvH4_7g30371
malus_domestica MD01G1221900.v1.1 MD03G1052700.v1.1 MD05G1118500.v1.1 MD10G1135700.v1.1 MD11G1161900.v1.1 MD12G1093400.v1.1 MD15G1409800.v1.1 MD16G1228000.v1.1
pyrus_communis pycom03g04970 pycom08g16190 pycom09g07650 pycom10g14400 pycom11g09170 pycom11g11100 pycom11g11120 pycom11g13240 pycom11g21780 pycom12g16560 pycom13g08440 pycom14g00770 pycom14g07540 pycom17g09330
rosa_chinensis RchiOBHm_Chr1g0318421 RchiOBHm_Chr1g0318431 RchiOBHm_Chr1g0327211 RchiOBHm_Chr1g0334951 RchiOBHm_Chr1g0343051 RchiOBHm_Chr1g0347471 RchiOBHm_Chr2g0084481 RchiOBHm_Chr2g0095011 RchiOBHm_Chr2g0096851 RchiOBHm_Chr2g0127961 RchiOBHm_Chr2g0130281 RchiOBHm_Chr2g0133091 RchiOBHm_Chr2g0173591 RchiOBHm_Chr3g0453251 RchiOBHm_Chr4g0384731 RchiOBHm_Chr4g0384871 RchiOBHm_Chr4g0422481 RchiOBHm_Chr5g0012141 RchiOBHm_Chr5g0019851 RchiOBHm_Chr5g0038651 RchiOBHm_Chr5g0042901 RchiOBHm_Chr5g0043951 RchiOBHm_Chr6g0253561 RchiOBHm_Chr7g0213551 RchiOBHm_Chr7g0220031 RchiOBHm_Chr7g0221581 RchiOBHm_Chr7g0230091 RchiOBHm_Chr7g0235291
rosa_laevigata RLG00000001336 RLG00000002469 RLG00000008084 RLG00000009350 RLG00000012956 RLG00000014177 RLG00000016845 RLG00000017722 RLG00000018937 RLG00000018957 RLG00000031697 RLG00000032070 RLG00000034648
rosa_multiflora Rmu_co8164630.1_g000001 Rmu_co8485123.1_g000001 Rmu_sc0000023.1_g000003 Rmu_sc0000068.1_g000010 Rmu_sc0000084.1_g000004 Rmu_sc0000186.1_g000020 Rmu_sc0000258.1_g000043 Rmu_sc0000305.1_g000013 Rmu_sc0000305.1_g000014 Rmu_sc0000340.1_g000040 Rmu_sc0000452.1_g000008 Rmu_sc0000470.1_g000022 Rmu_sc0000570.1_g000013 Rmu_sc0000570.1_g000014 Rmu_sc0000765.1_g000038 Rmu_sc0000774.1_g000029 Rmu_sc0000805.1_g000011 Rmu_sc0000830.1_g000067 Rmu_sc0000831.1_g000008 Rmu_sc0000918.1_g000005 Rmu_sc0000982.1_g000024 Rmu_sc0000982.1_g000025 Rmu_sc0001035.1_g000071 Rmu_sc0001035.1_g000072 Rmu_sc0001068.1_g000017 Rmu_sc0001136.1_g000015 Rmu_sc0001136.1_g000016 Rmu_sc0001386.1_g000028 Rmu_sc0001417.1_g000009 Rmu_sc0001598.1_g000010 Rmu_sc0001886.1_g000001 Rmu_sc0002129.1_g000043 Rmu_sc0002162.1_g000012 Rmu_sc0002252.1_g000006 Rmu_sc0002321.1_g000003 Rmu_sc0002344.1_g000013 Rmu_sc0002344.1_g000015 Rmu_sc0002592.1_g000004 Rmu_sc0002592.1_g000005 Rmu_sc0002691.1_g000042 Rmu_sc0002786.1_g000023 Rmu_sc0002845.1_g000019 Rmu_sc0002968.1_g000022 Rmu_sc0002988.1_g000001 Rmu_sc0003131.1_g000015 Rmu_sc0003180.1_g000017 Rmu_sc0003275.1_g000005 Rmu_sc0003275.1_g000075 Rmu_sc0003337.1_g000008 Rmu_sc0003830.1_g000005 Rmu_sc0004032.1_g000018 Rmu_sc0004277.1_g000068 Rmu_sc0004366.1_g000003 Rmu_sc0004371.1_g000005 Rmu_sc0004413.1_g000040 Rmu_sc0004898.1_g000009 Rmu_sc0004898.1_g000010 Rmu_sc0004929.1_g000002 Rmu_sc0005065.1_g000007 Rmu_sc0005065.1_g000008 Rmu_sc0005261.1_g000010 Rmu_sc0005375.1_g000019 Rmu_sc0005497.1_g000012 Rmu_sc0005704.1_g000001 Rmu_sc0005834.1_g000013 Rmu_sc0006076.1_g000004 Rmu_sc0006311.1_g000010 Rmu_sc0006669.1_g000018 Rmu_sc0006720.1_g000005 Rmu_sc0006841.1_g000002 Rmu_sc0006854.1_g000004 Rmu_sc0006854.1_g000005 Rmu_sc0006999.1_g000008 Rmu_sc0007415.1_g000001 Rmu_sc0007415.1_g000031 Rmu_sc0007650.1_g000004 Rmu_sc0007754.1_g000003 Rmu_sc0007912.1_g000004 Rmu_sc0007912.1_g000005 Rmu_sc0008429.1_g000004 Rmu_sc0009780.1_g000018 Rmu_sc0010062.1_g000002 Rmu_sc0010104.1_g000001 Rmu_sc0010647.1_g000002 Rmu_sc0010824.1_g000009 Rmu_sc0011112.1_g000010 Rmu_sc0013354.1_g000004 Rmu_sc0014685.1_g000005 Rmu_sc0014685.1_g000006 Rmu_sc0014882.1_g000002 Rmu_sc0019879.1_g000004 Rmu_sc0020359.1_g000006 Rmu_sc0020945.1_g000003 Rmu_sc0023467.1_g000001 Rmu_sc0025019.1_g000001 Rmu_sc0026446.1_g000002 Rmu_sc0027500.1_g000001 Rmu_sc0027830.1_g000001 Rmu_sc0028318.1_g000001 Rmu_sc0028858.1_g000002 Rmu_sc0031772.1_g000001 Rmu_sc0032192.1_g000001 Rmu_sc0033789.1_g000001 Rmu_sc0034922.1_g000001 Rmu_ssc0000295.1_g000057 Rmu_ssc0000309.1_g000034 Rmu_ssc0000420.1_g000035 Rmu_ssc0000423.1_g000017 Rmu_ssc0000470.1_g000004
rosa_roxburghii Rroxscaffold_1G00016870 Rroxscaffold_1G00024230 Rroxscaffold_1G00037110 Rroxscaffold_1G00037130 Rroxscaffold_2G00137090 Rroxscaffold_2G00137100 Rroxscaffold_3G00221680 Rroxscaffold_3G00224180 Rroxscaffold_3G00226070 Rroxscaffold_4G00291380 Rroxscaffold_4G00293060 Rroxscaffold_4G00319010 Rroxscaffold_5G00347090 Rroxscaffold_5G00355090 Rroxscaffold_5G00356950 Rroxscaffold_7G00193500 Rroxscaffold_7G00207010 Rroxscaffold_7G00207130 Rroxscaffold_7G00207140
rosa_rugosa Rorug01G0086400.1 Rorug01G0087900 Rorug01G0095400 Rorug01G0105300 Rorug01G0107000 Rorug01G0152600.1 Rorug01G0152700.1 Rorug02G0010200 Rorug02G0010200 Rorug02G0157800 Rorug02G0157900 Rorug02G0248300 Rorug02G0249100 Rorug02G0249200 Rorug02G0277800 Rorug02G0277900 Rorug02G0324700 Rorug02G0330600 Rorug02G0510200 Rorug03G0162000 Rorug03G0171700 Rorug03G0189100 Rorug03G0267900 Rorug03G0339000 Rorug04G0012700 Rorug04G0050900 Rorug04G0152300 Rorug04G0283700 Rorug05G0043600 Rorug05G0151200 Rorug05G0152700 Rorug05G0158400 Rorug05G0209100 Rorug05G0209100 Rorug05G0224900 Rorug05G0227700 Rorug05G0244300.1 Rorug05G0251800 Rorug05G0293600 Rorug05G0335900 Rorug05G0582400 Rorug06G0045400 Rorug06G0063700 Rorug06G0082300 Rorug06G0173900 Rorug06G0190800 Rorug06G0480100 Rorug07G0057100 Rorug07G0117700 Rorug07G0148300 Rorug07G0190900
rosa_samantha Rh1BG184600 Rh1CG100800 Rh1CG353300 Rh1DG147400 Rh1DG214200 Rh2AG491700 Rh2BG022000 Rh2BG196400 Rh2BG209900 Rh2BG331800 Rh2CG478100 Rh2DG096100 Rh2DG303100 Rh3AG125300 Rh3AG335300 Rh3BG274800 Rh3CG243100 Rh3CG243200 Rh3CG243300 Rh3CG365100 Rh3CG369400 Rh3DG341600 Rh3DG370500 Rh4AG060300 Rh4AG088400 Rh4AG357100 Rh4CG308700 Rh4CG440700 Rh4DG362800 Rh4DG421700 Rh5AG182900 Rh5AG284500 Rh5AG293500 Rh5AG440000 Rh5AG445200 Rh5AG512000 Rh5AG522000 Rh5BG294100 Rh5BG301500 Rh5BG347300 Rh5CG103200 Rh5CG155400 Rh5CG212800 Rh5CG231400 Rh5CG253700 Rh5CG329100 Rh5CG471500 Rh5DG304000 Rh5DG310700 Rh5DG466000 Rh6AG473800 Rh6BG022600 Rh6BG120300 Rh6BG292800 Rh6CG118500 Rh6CG366400 Rh6DG106900 Rh7BG324000 Rh7BG382800 Rh7DG221900 Rh7DG256900 Rh7DG259800 Rh7DG259900 Rh7DG329400 Rh7DG329500 Rh7DG351700 Rh7DG351800
rosa_wichuraiana Rw0G008220 Rw0G010100 Rw0G011420 Rw0G017230 Rw0G017240 Rw0G023340 Rw1G007820 Rw1G019090 Rw1G019100 Rw1G026940 Rw2G002550 Rw2G018570 Rw2G021650 Rw2G024850 Rw2G036390 Rw2G041200 Rw2G042490 Rw3G024200 Rw3G027660 Rw3G029100 Rw3G029110 Rw4G005930 Rw4G010720 Rw4G014560 Rw4G017210 Rw4G020740 Rw5G003740 Rw5G008130 Rw5G011060 Rw5G012210 Rw5G014240 Rw5G015950 Rw5G016590 Rw5G017570 Rw5G019040 Rw5G027200 Rw5G030010 Rw5G036030 Rw6G001380 Rw6G001420 Rw6G006520 Rw6G007020 Rw6G009200 Rw6G009300 Rw6G020110 Rw6G023690 Rw6G030650 Rw6G041310 Rw7G005190 Rw7G012150 Rw7G014860 Rw7G014870 Rw7G020130 Rw7G024500 Rw7G029450 Rw7G029460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 461
AccB1I GGYRCC 2 cut(s) 280, 2163
AccB7I CCANNNNNTGG 1 cut(s) 1695
AccII CGCG 1 cut(s) 630
AciI CCGC 6 cut(s) 1055, 1229, 1269, 1481, 1756, 1820
AclI AACGTT 1 cut(s) 1003
AclWI GGATC 2 cut(s) 480, 974
AcoI YGGCCR 3 cut(s) 2077, 2081, 2143
AcsI RAATTY 3 cut(s) 232, 500, 1403
AcyI GRCGYC 1 cut(s) 2164
AfaI GTAC 3 cut(s) 146, 554, 1358
AfiI CCNNNNNNNGG 2 cut(s) 290, 1695
AflII CTTAAG 2 cut(s) 1334, 1642
AjnI CCWGG 1 cut(s) 154
AloI GAACNNNNNNTCC 4 cut(s) 289, 321, 464, 496
AluBI AGCT 9 cut(s) 168, 724, 881, 916, 1440, 1615, 1962, 2030, 2176
AluI AGCT 9 cut(s) 168, 724, 881, 916, 1440, 1615, 1962, 2030, 2176
Alw21I GWGCWC 2 cut(s) 29, 272
Alw26I GTCTC 6 cut(s) 35, 103, 738, 810, 1230, 1778
Alw44I GTGCAC 1 cut(s) 25
AlwI GGATC 2 cut(s) 480, 974
AoxI GGCC 5 cut(s) 413, 2069, 2077, 2081, 2143
ApaLI GTGCAC 1 cut(s) 25
ApeKI GCWGC 6 cut(s) 709, 916, 1073, 1895, 2027, 2108
ApoI RAATTY 3 cut(s) 232, 500, 1403
ArsI GACNNNNNNTTYG 4 cut(s) 1588, 1620, 1690, 1722
AseI ATTAAT 1 cut(s) 1866
Asp700I GAANNNNTTC 1 cut(s) 1494
AspLEI GCGC 2 cut(s) 632, 2166
AspS9I GGNCC 2 cut(s) 1478, 1698
AsuC2I CCSGG 1 cut(s) 954
AsuHPI GGTGA 7 cut(s) 262, 658, 911, 1322, 1416, 1568, 2165
AsuII TTCGAA 2 cut(s) 483, 2095
AvaII GGWCC 2 cut(s) 1478, 1698
BaeGI GKGCMC 1 cut(s) 29
BanI GGYRCC 2 cut(s) 280, 2163
BanII GRGCYC 1 cut(s) 959
BarI GAAGNNNNNNTAC 2 cut(s) 295, 327
Bbv12I GWGCWC 2 cut(s) 29, 272
BbvI GCAGC 6 cut(s) 721, 903, 1060, 1882, 2039, 2120
BccI CCATC 3 cut(s) 602, 890, 2080
BceAI ACGGC 3 cut(s) 1495, 1836, 1927
BciT130I CCWGG 1 cut(s) 156
BciVI GTATCC 1 cut(s) 1094
BclI TGATCA 1 cut(s) 1204
BcnI CCSGG 1 cut(s) 954
BcoDI GTCTC 6 cut(s) 35, 103, 738, 810, 1230, 1778
BfaI CTAG 6 cut(s) 390, 873, 945, 1599, 1779, 2031
BfmI CTRYAG 2 cut(s) 1963, 2106
BfoI RGCGCY 1 cut(s) 2167
BfrI CTTAAG 2 cut(s) 1334, 1642
BfuI GTATCC 1 cut(s) 1094
BisI GCNGC 7 cut(s) 710, 917, 1074, 1757, 1896, 2028, 2109
BlsI GCNGC 7 cut(s) 711, 918, 1075, 1758, 1897, 2029, 2110
Bme1390I CCNGG 2 cut(s) 156, 954
Bme18I GGWCC 2 cut(s) 1478, 1698
BmgT120I GGNCC 2 cut(s) 1478, 1698
BmiI GGNNCC 4 cut(s) 282, 423, 1920, 2165
BmrFI CCNGG 2 cut(s) 156, 954
BmsI GCATC 5 cut(s) 376, 922, 1060, 1694, 2014
Bpu10I CCTNAGC 1 cut(s) 1432
Bpu14I TTCGAA 2 cut(s) 483, 2095
BpuEI CTTGAG 3 cut(s) 160, 553, 770
BpuMI CCSGG 1 cut(s) 954
BsaAI YACGTR 1 cut(s) 30
BsaHI GRCGYC 1 cut(s) 2164
BsaI GGTCTC 2 cut(s) 103, 738
BsaJI CCNNGG 2 cut(s) 154, 886
BsaXI ACNNNNNCTCC 6 cut(s) 289, 319, 1652, 1682, 1715, 1745
Bsc4I CCNNNNNNNGG 2 cut(s) 290, 1695
Bse118I RCCGGY 2 cut(s) 2079, 2145
Bse1I ACTGG 2 cut(s) 541, 1123
Bse3DI GCAATG 1 cut(s) 1534
BseBI CCWGG 1 cut(s) 156
BseDI CCNNGG 2 cut(s) 154, 886
BseGI GGATG 7 cut(s) 10, 196, 337, 1075, 1685, 1990, 2072
BseLI CCNNNNNNNGG 2 cut(s) 290, 1695
BseMI GCAATG 1 cut(s) 1534
BseMII CTCAG 2 cut(s) 926, 1662
BseNI ACTGG 2 cut(s) 541, 1123
BseRI GAGGAG 1 cut(s) 1299
BseSI GKGCMC 1 cut(s) 29
BseX3I CGGCCG 1 cut(s) 2077
BseXI GCAGC 6 cut(s) 721, 903, 1060, 1882, 2039, 2120
BsgI GTGCAG 1 cut(s) 2172
Bsh1236I CGCG 1 cut(s) 630
Bsh1285I CGRYCG 1 cut(s) 2080
BshFI GGCC 5 cut(s) 415, 2071, 2079, 2083, 2145
BshNI GGYRCC 2 cut(s) 280, 2163
BsiEI CGRYCG 1 cut(s) 2080
BsiHKAI GWGCWC 2 cut(s) 29, 272
BsiSI CCGG 4 cut(s) 953, 2076, 2080, 2146
BslI CCNNNNNNNGG 2 cut(s) 290, 1695
BsmAI GTCTC 6 cut(s) 35, 103, 738, 810, 1230, 1778
BsmBI CGTCTC 1 cut(s) 35
BsmI GAATGC 3 cut(s) 817, 1050, 1285
BsnI GGCC 5 cut(s) 415, 2071, 2079, 2083, 2145
Bso31I GGTCTC 2 cut(s) 103, 738
Bsp119I TTCGAA 2 cut(s) 483, 2095
Bsp1286I GDGCHC 3 cut(s) 29, 272, 959
Bsp143I GATC 7 cut(s) 45, 472, 979, 1204, 1258, 1502, 1825
Bsp19I CCATGG 1 cut(s) 886
BspACI CCGC 6 cut(s) 1055, 1229, 1269, 1481, 1756, 1820
BspANI GGCC 5 cut(s) 415, 2071, 2079, 2083, 2145
BspCNI CTCAG 2 cut(s) 925, 1663
BspFNI CGCG 1 cut(s) 630
BspHI TCATGA 2 cut(s) 442, 892
BspLI GGNNCC 4 cut(s) 282, 423, 1920, 2165
BspMAI CTGCAG 1 cut(s) 2110
BspPI GGATC 2 cut(s) 480, 974
BspQI GCTCTTC 1 cut(s) 1079
BspT104I TTCGAA 2 cut(s) 483, 2095
BspT107I GGYRCC 2 cut(s) 280, 2163
BspTI CTTAAG 2 cut(s) 1334, 1642
BspTNI GGTCTC 2 cut(s) 103, 738
BsrDI GCAATG 1 cut(s) 1534
BsrFI RCCGGY 2 cut(s) 2079, 2145
BsrI ACTGG 2 cut(s) 541, 1123
BssAI RCCGGY 2 cut(s) 2079, 2145
BssECI CCNNGG 2 cut(s) 154, 886
BssMI GATC 7 cut(s) 45, 472, 979, 1204, 1258, 1502, 1825
BssNI GRCGYC 1 cut(s) 2164
BssT1I CCWWGG 1 cut(s) 886
Bst2UI CCWGG 1 cut(s) 156
Bst4CI ACNGT 2 cut(s) 1275, 1789
Bst6I CTCTTC 2 cut(s) 1079, 1485
BstACI GRCGYC 1 cut(s) 2164
BstAFI CTTAAG 2 cut(s) 1334, 1642
BstAPI GCANNNNNTGC 1 cut(s) 590
BstBAI YACGTR 1 cut(s) 30
BstBI TTCGAA 2 cut(s) 483, 2095
BstC8I GCNNGC 2 cut(s) 1438, 2081
BstDEI CTNAG 5 cut(s) 594, 704, 912, 1432, 1671
BstDSI CCRYGG 1 cut(s) 886
BstF5I GGATG 7 cut(s) 10, 196, 337, 1075, 1685, 1990, 2072
BstFNI CGCG 1 cut(s) 630
BstH2I RGCGCY 1 cut(s) 2167
BstHHI GCGC 2 cut(s) 632, 2166
BstKTI GATC 7 cut(s) 48, 475, 982, 1207, 1261, 1505, 1828
BstMAI GTCTC 6 cut(s) 35, 103, 738, 810, 1230, 1778
BstMBI GATC 7 cut(s) 45, 472, 979, 1204, 1258, 1502, 1825
BstMCI CGRYCG 1 cut(s) 2080
BstMWI GCNNNNNNNGC 6 cut(s) 590, 878, 963, 1035, 1507, 1895
BstNI CCWGG 1 cut(s) 156
BstNSI RCATGY 3 cut(s) 693, 1108, 1889
BstSCI CCNGG 2 cut(s) 154, 952
BstSFI CTRYAG 2 cut(s) 1963, 2106
BstSLI GKGCMC 1 cut(s) 29
BstUI CGCG 1 cut(s) 630
BstV1I GCAGC 6 cut(s) 721, 903, 1060, 1882, 2039, 2120
BstZI CGGCCG 1 cut(s) 2077
BsuI GTATCC 1 cut(s) 1094
BsuRI GGCC 5 cut(s) 415, 2071, 2079, 2083, 2145
BtgI CCRYGG 1 cut(s) 886
BtsCI GGATG 7 cut(s) 10, 196, 337, 1075, 1685, 1990, 2072
BtsIMutI CAGTG 2 cut(s) 369, 1821
Cac8I GCNNGC 2 cut(s) 1438, 2081
CciI TCATGA 2 cut(s) 442, 892
CfoI GCGC 2 cut(s) 632, 2166
Cfr10I RCCGGY 2 cut(s) 2079, 2145
Cfr13I GGNCC 2 cut(s) 1478, 1698
Csp6I GTAC 3 cut(s) 145, 553, 1357
CviQI GTAC 3 cut(s) 145, 553, 1357
DdeI CTNAG 5 cut(s) 594, 704, 912, 1432, 1671
DinI GGCGCC 1 cut(s) 2165
DpnI GATC 7 cut(s) 47, 474, 981, 1206, 1260, 1504, 1827
DpnII GATC 7 cut(s) 45, 472, 979, 1204, 1258, 1502, 1825
EaeI YGGCCR 3 cut(s) 2077, 2081, 2143
EagI CGGCCG 1 cut(s) 2077
Eam1104I CTCTTC 2 cut(s) 1079, 1485
EarI CTCTTC 2 cut(s) 1079, 1485
EciI GGCGGA 1 cut(s) 1470
EclXI CGGCCG 1 cut(s) 2077
Eco130I CCWWGG 1 cut(s) 886
Eco24I GRGCYC 1 cut(s) 959
Eco31I GGTCTC 2 cut(s) 103, 738
Eco47I GGWCC 2 cut(s) 1478, 1698
Eco52I CGGCCG 1 cut(s) 2077
EcoRI GAATTC 1 cut(s) 232
EcoRII CCWGG 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 886
EcoT22I ATGCAT 2 cut(s) 1052, 1534
EcoT38I GRGCYC 1 cut(s) 959
EgeI GGCGCC 1 cut(s) 2165
EheI GGCGCC 1 cut(s) 2165
ErhI CCWWGG 1 cut(s) 886
Esp3I CGTCTC 1 cut(s) 35
FalI AAGNNNNNCTT 2 cut(s) 687, 719
FbaI TGATCA 1 cut(s) 1204
Fnu4HI GCNGC 7 cut(s) 710, 917, 1074, 1757, 1896, 2028, 2109
FokI GGATG 7 cut(s) 17, 203, 344, 1082, 1672, 1977, 2059
FriOI GRGCYC 1 cut(s) 959
FseI GGCCGGCC 1 cut(s) 2083
Fsp4HI GCNGC 7 cut(s) 710, 917, 1074, 1757, 1896, 2028, 2109
FspBI CTAG 6 cut(s) 390, 873, 945, 1599, 1779, 2031
GlaI GCGC 2 cut(s) 631, 2165
GluI GCNGC 7 cut(s) 710, 917, 1074, 1757, 1896, 2028, 2109
HaeII RGCGCY 1 cut(s) 2167
HaeIII GGCC 5 cut(s) 415, 2071, 2079, 2083, 2145
HapII CCGG 4 cut(s) 953, 2076, 2080, 2146
HhaI GCGC 2 cut(s) 632, 2166
Hin1I GRCGYC 1 cut(s) 2164
Hin6I GCGC 2 cut(s) 630, 2164
HinP1I GCGC 2 cut(s) 630, 2164
HincII GTYRAC 2 cut(s) 516, 1387
HindII GTYRAC 2 cut(s) 516, 1387
HindIII AAGCTT 1 cut(s) 722
HinfI GANTC 7 cut(s) 121, 257, 902, 1169, 1304, 1580, 1970
HpaII CCGG 4 cut(s) 953, 2076, 2080, 2146
HphI GGTGA 7 cut(s) 262, 658, 911, 1322, 1416, 1568, 2165
Hpy166II GTNNAC 9 cut(s) 27, 516, 555, 685, 1357, 1387, 1698, 1883, 2184
Hpy188I TCNGA 5 cut(s) 607, 751, 1174, 1672, 1807
Hpy188III TCNNGA 6 cut(s) 59, 443, 893, 929, 1301, 1371
Hpy8I GTNNAC 9 cut(s) 27, 516, 555, 685, 1357, 1387, 1698, 1883, 2184
HpyAV CCTTC 6 cut(s) 479, 856, 1405, 1466, 1631, 1672
HpyCH4III ACNGT 2 cut(s) 1275, 1789
HpyCH4IV ACGT 4 cut(s) 29, 74, 1003, 2180
HpyF10VI GCNNNNNNNGC 6 cut(s) 590, 878, 963, 1035, 1507, 1895
HpyF3I CTNAG 5 cut(s) 594, 704, 912, 1432, 1671
HpySE526I ACGT 4 cut(s) 29, 74, 1003, 2180
Hsp92I GRCGYC 1 cut(s) 2164
HspAI GCGC 2 cut(s) 630, 2164
KasI GGCGCC 1 cut(s) 2163
KroI GCCGGC 1 cut(s) 2079
KroNI GCCGGC 1 cut(s) 2081
Ksp22I TGATCA 1 cut(s) 1204
Kzo9I GATC 7 cut(s) 45, 472, 979, 1204, 1258, 1502, 1825
LguI GCTCTTC 1 cut(s) 1079
LmnI GCTCC 2 cut(s) 267, 427
Lsp1109I GCAGC 6 cut(s) 721, 903, 1060, 1882, 2039, 2120
LweI GCATC 5 cut(s) 376, 922, 1060, 1694, 2014
MaeI CTAG 6 cut(s) 390, 873, 945, 1599, 1779, 2031
MaeII ACGT 4 cut(s) 29, 74, 1003, 2180
MaeIII GTNAC 4 cut(s) 899, 1243, 1252, 1931
MalI GATC 7 cut(s) 47, 474, 981, 1206, 1260, 1504, 1827
MboI GATC 7 cut(s) 45, 472, 979, 1204, 1258, 1502, 1825
MboII GAAGA 9 cut(s) 342, 649, 1000, 1096, 1135, 1477, 1502, 1747, 2033
MfeI CAATTG 1 cut(s) 1591
MhlI GDGCHC 3 cut(s) 29, 272, 959
Mly113I GGCGCC 1 cut(s) 2164
MlyI GAGTC 2 cut(s) 896, 1589
MmeI TCCRAC 2 cut(s) 654, 1494
Mph1103I ATGCAT 2 cut(s) 1052, 1534
MroNI GCCGGC 1 cut(s) 2079
MroXI GAANNNNTTC 1 cut(s) 1494
MslI CAYNNNNRTG 5 cut(s) 32, 278, 891, 897, 1876
MspA1I CMGCKG 2 cut(s) 916, 1269
MspCI CTTAAG 2 cut(s) 1334, 1642
MspI CCGG 4 cut(s) 953, 2076, 2080, 2146
MspR9I CCNGG 2 cut(s) 156, 954
MunI CAATTG 1 cut(s) 1591
Mva1269I GAATGC 3 cut(s) 817, 1050, 1285
MvaI CCWGG 1 cut(s) 156
MvnI CGCG 1 cut(s) 630
MwoI GCNNNNNNNGC 6 cut(s) 590, 878, 963, 1035, 1507, 1895
NaeI GCCGGC 1 cut(s) 2081
NarI GGCGCC 1 cut(s) 2164
NciI CCSGG 1 cut(s) 954
NcoI CCATGG 1 cut(s) 886
NdeII GATC 7 cut(s) 45, 472, 979, 1204, 1258, 1502, 1825
NgoMIV GCCGGC 1 cut(s) 2079
NlaIV GGNNCC 4 cut(s) 282, 423, 1920, 2165
NmeAIII GCCGAG 1 cut(s) 1603
NmuCI GTSAC 2 cut(s) 899, 1243
NsiI ATGCAT 2 cut(s) 1052, 1534
NspI RCATGY 3 cut(s) 693, 1108, 1889
NspV TTCGAA 2 cut(s) 483, 2095
PagI TCATGA 2 cut(s) 442, 892
PciSI GCTCTTC 1 cut(s) 1079
PcsI WCGNNNNNNNCGW 1 cut(s) 1000
PctI GAATGC 3 cut(s) 817, 1050, 1285
PdiI GCCGGC 1 cut(s) 2081
PdmI GAANNNNTTC 1 cut(s) 1494
PfeI GAWTC 5 cut(s) 121, 257, 1169, 1304, 1970
PflMI CCANNNNNTGG 1 cut(s) 1695
PkrI GCNGC 7 cut(s) 711, 918, 1075, 1758, 1897, 2029, 2110
PleI GAGTC 2 cut(s) 896, 1588
PluTI GGCGCC 1 cut(s) 2167
PpsI GAGTC 2 cut(s) 896, 1588
Ppu21I YACGTR 1 cut(s) 30
PshBI ATTAAT 1 cut(s) 1866
PsiI TTATAA 1 cut(s) 461
Psp1406I AACGTT 1 cut(s) 1003
Psp6I CCWGG 1 cut(s) 154
PspGI CCWGG 1 cut(s) 154
PspN4I GGNNCC 4 cut(s) 282, 423, 1920, 2165
PspPI GGNCC 2 cut(s) 1478, 1698
PstI CTGCAG 1 cut(s) 2110
PvuII CAGCTG 1 cut(s) 916
RigI GGCCGGCC 1 cut(s) 2083
RsaI GTAC 3 cut(s) 146, 554, 1358
RsaNI GTAC 3 cut(s) 145, 553, 1357
RseI CAYNNNNRTG 5 cut(s) 32, 278, 891, 897, 1876
SapI GCTCTTC 1 cut(s) 1079
SatI GCNGC 7 cut(s) 710, 917, 1074, 1757, 1896, 2028, 2109
Sau3AI GATC 7 cut(s) 45, 472, 979, 1204, 1258, 1502, 1825
Sau96I GGNCC 2 cut(s) 1478, 1698
SchI GAGTC 2 cut(s) 896, 1589
ScrFI CCNGG 2 cut(s) 156, 954
SduI GDGCHC 3 cut(s) 29, 272, 959
SfaNI GCATC 5 cut(s) 376, 922, 1060, 1694, 2014
SfcI CTRYAG 2 cut(s) 1963, 2106
SfoI GGCGCC 1 cut(s) 2165
SfuI TTCGAA 2 cut(s) 483, 2095
SinI GGWCC 2 cut(s) 1478, 1698
SmiMI CAYNNNNRTG 5 cut(s) 32, 278, 891, 897, 1876
SmlI CTYRAG 5 cut(s) 139, 568, 785, 1334, 1642
SmoI CTYRAG 5 cut(s) 139, 568, 785, 1334, 1642
SsiI CCGC 6 cut(s) 1055, 1229, 1269, 1481, 1756, 1820
SspDI GGCGCC 1 cut(s) 2163
SspMI CTAG 6 cut(s) 390, 873, 945, 1599, 1779, 2031
StyD4I CCNGG 2 cut(s) 154, 952
StyI CCWWGG 1 cut(s) 886
TaaI ACNGT 2 cut(s) 1275, 1789
TaiI ACGT 4 cut(s) 32, 77, 1006, 2183
TaqI TCGA 3 cut(s) 483, 1261, 2095
TatI WGTACW 1 cut(s) 552
TauI GCSGC 1 cut(s) 1759
TfiI GAWTC 5 cut(s) 121, 257, 1169, 1304, 1970
TscAI CASTG 2 cut(s) 369, 1821
TseFI GTSAC 2 cut(s) 899, 1243
TseI GCWGC 6 cut(s) 709, 916, 1073, 1895, 2027, 2108
Tsp45I GTSAC 2 cut(s) 899, 1243
TspGWI ACGGA 1 cut(s) 574
TspRI CASTG 2 cut(s) 369, 1821
Van91I CCANNNNNTGG 1 cut(s) 1695
Vha464I CTTAAG 2 cut(s) 1334, 1642
VneI GTGCAC 1 cut(s) 25
VpaK11BI GGWCC 2 cut(s) 1478, 1698
VspI ATTAAT 1 cut(s) 1866
XapI RAATTY 3 cut(s) 232, 500, 1403
XceI RCATGY 3 cut(s) 693, 1108, 1889
XcmI CCANNNNNNNNNTGG 1 cut(s) 893
XmnI GAANNNNTTC 1 cut(s) 1494
XspI CTAG 6 cut(s) 390, 873, 945, 1599, 1779, 2031
Zsp2I ATGCAT 2 cut(s) 1052, 1534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.