Rw4G017210

plant mutator transposase zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000043
Physical Location & Seq
Forward (+)
38789352 .. 38791810
2459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G017210.1

Sequence Viewer

Length: 2118 bp
ATGGAAGCTGCGATTATTGCCAGATGTCGTTTGGACTCAAAAACTGTGGCAGTGCCACTTTTTAACTTACCTACGTATGATTACATATGTAGTCAAATTTCTTCGCGGTTTAGCGAGCTAGATGTATGTTCTTTTGAGTTAACATACTCAATTGGAAACCACCCATCATGTATTCTGCAATCTGACATGGATGTCCAGGTTTTACTGTTTTCTCTATCTAATGAAAGAAAAAGTTTTGTTGATATCGACATAAATGTCATTGGAACTGTCGATGCTGAGAATGAAGAGGATGATATTGAGGTTGGCAATAATGAAGAGGATTGCTCTAACGATGAGGATGAGTATTTAGGGAAGTATGCTCCTCCTCAAGGTAAAGTTTATTTGTCTCATGAATGGAAGACATATATAAGATCAGTTGGGCAAAAATTCGAGGGTGGTGTTACAGAATTTAGGGACAAACTCTGCAAGTATGCTATTGAAAAAGGTTTTAGATTTGCATATATCAAGAATGACAAGGAGCGTGTTACAGCGGAATGTTTCATGAAGCATGCAGAAGGTTGTAGCTGGCGTATTCATGCCATATTGAATCGCGCCAATGGATTCTTCTACATTAAAGATTTGAATAATGAGCATAGTTGTCGAGCGCGAATTCGACTCCGGAAAAGTGTTTTGATGGGTTCAAAGATTGTGTCGTCAGTTGTAGCAGACCAAATTCGAAGCAAACCACTTATGAAGCCTATTGAAATCGTAAAAGATTTCAAGCACAACTATGGATTGGATATATCTTATTATAATGCATGGAAAGGTAAAGAGTTGGCAAAAATTCAAGTTCACGGCGATGAGGAATCGTCGTATACTCAGTTGCTATGGTATGTTGATGCATTGATGAAGACAAACAAGGGTTCTCACTGTGTCCTTGAGTGCGACGAAATTTCTTCACGTTTCAAGCGACTCTTCATATCATACCATGCCTCCATAGAAGGTTACAAATTTTGCAGACCATTCCTTTGTCTTGATGGATCCCATATAAAAAATAAATACAAAGGACATTTGCTGGGCGCAACTGGGAAGAATGGTAACCAAGGTATATATCCCCTGGCTTTTGCTATAGTTGACTCTGAAGATGAAAACAATTGGACTTGGTTCTTAGAAAATATTTACCAGATTTTGCGGCCACAAGGTCGCAAAATCACCTTCATATCCGACCGCAATAAAGGCCTTCTTGAAGCTGTTCAAAAAGTTTTCCCAGATTCAGACCATGCTTTTTGTTTGTTTCATTTGAAACAAAATGTTCTGAAAAGATACCCATCTGGAATGGGAAAAAGCTATCGTAACTGGATTGTAAAGTGCTTCAAGAGGTGTGCTTATGCTCCCACAAGTAACCATTTTGACACTCATATGTCAAAATTGACCAAGGATGGTGGAGGAATCATGCAGAAATTTCTAGAAGACACTCCAAAGGAACATTGGTCTAATGCCTTTTTCCCAGAAATGTGCTCAAACTTGGCGGAGTCTTTCAACGCATGGGTAAAAGTTGAGCGTGAGCTGCCTTCTCCACAATTGGTTAATAGATTGCGGGTGAAGCTAATGGTTTCCTATGCTGCAAGGCGTCGTGCAGCGACCAAATGGTCAACAATACTATGCCCCAAAATGGAGAAGCTGTTGAACAAGCTCTATGAAGTAGGTAGACACTGGGATGTGAGCCGATCGACGGATTTTATATTTGAAGTTCATGATACTTATTCCTTCCTTGTTGATCTGGAAACCCGCACATGCTCTTGTCATCAATGGCAAATCAAAGGGTTTCCTTGTGCACATGCTATTGCAGCCATCGTTGCGGATGAAGGTGATCCCTATACATATGTGGAACCTTATTTCACAGTGGATTTCTACAAAAACTGCTATAGCAACCCCATTGTCCCTGTGTCTGATATTGAGAAAAAAACACCAGATCAATATGGTAACCTTGTGGTTAAGCCTCCTTTGACAAGGAAACCCCCTGGTAGACCACGTAAAAGAAGGATCCCGTCTGCAGGTGAGGAAGTGAGATCGATCAAATGTGGCAGGTGTGGTGTCATTGGACGACATAATCGGAAAACTTGCACATCTGCAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

705

Amino Acids

81.06

Weight (kDa)

8.67

Isoelectric Point (pI)

38.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 138 - 204 1.1e-15 MuDR family transposase
MULE PF10551 336 - 430 1.7e-21 MULE transposase domain
Transposase_mut PF00872 358 - 499 2.2e-08 Transposase, Mutator family
SWIM PF04434 583 - 611 1.3e-08 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000043)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27871 FvH4_1g29590 FvH4_1g29591 FvH4_1g29862 FvH4_2g00085 FvH4_2g02783 FvH4_2g02910 FvH4_2g18181 FvH4_2g24333 FvH4_3g06732 FvH4_3g17131 FvH4_3g20061 FvH4_3g20062 FvH4_3g24441 FvH4_3g24443 FvH4_3g24443 FvH4_3g24500 FvH4_3g24740 FvH4_3g25230 FvH4_3g26060 FvH4_3g27583 FvH4_3g32421 FvH4_3g35812 FvH4_3g38841 FvH4_3g40971 FvH4_3g44613 FvH4_3g44614 FvH4_3g44615 FvH4_4g04920 FvH4_4g07822 FvH4_4g08151 FvH4_4g08160 FvH4_4g08531 FvH4_4g09200 FvH4_4g09692 FvH4_4g10062 FvH4_4g10530 FvH4_5g03091 FvH4_5g03092 FvH4_5g06862 FvH4_5g06863 FvH4_5g07920 FvH4_5g17871 FvH4_5g17872 FvH4_5g23321 FvH4_5g24281 FvH4_5g24391 FvH4_5g28463 FvH4_5g34083 FvH4_6g06701 FvH4_6g20107 FvH4_6g20143 FvH4_6g22012 FvH4_6g22551 FvH4_6g31341 FvH4_6g33561 FvH4_6g33592 FvH4_6g34232 FvH4_6g34233 FvH4_6g37972 FvH4_6g37972 FvH4_6g37972 FvH4_6g39191 FvH4_6g39681 FvH4_6g45872 FvH4_7g01581 FvH4_7g02154 FvH4_7g03472 FvH4_7g07292 FvH4_7g07293 FvH4_7g20282 FvH4_7g30371
malus_domestica MD01G1221900.v1.1 MD03G1052700.v1.1 MD05G1118500.v1.1 MD10G1135700.v1.1 MD11G1161900.v1.1 MD12G1093400.v1.1 MD15G1409800.v1.1 MD16G1228000.v1.1
pyrus_communis pycom03g04970 pycom08g16190 pycom09g07650 pycom10g14400 pycom11g09170 pycom11g11100 pycom11g11120 pycom11g13240 pycom11g21780 pycom12g16560 pycom13g08440 pycom14g00770 pycom14g07540 pycom17g09330
rosa_chinensis RchiOBHm_Chr1g0318421 RchiOBHm_Chr1g0318431 RchiOBHm_Chr1g0327211 RchiOBHm_Chr1g0334951 RchiOBHm_Chr1g0343051 RchiOBHm_Chr1g0347471 RchiOBHm_Chr2g0084481 RchiOBHm_Chr2g0095011 RchiOBHm_Chr2g0096851 RchiOBHm_Chr2g0127961 RchiOBHm_Chr2g0130281 RchiOBHm_Chr2g0133091 RchiOBHm_Chr2g0173591 RchiOBHm_Chr3g0453251 RchiOBHm_Chr4g0384731 RchiOBHm_Chr4g0384871 RchiOBHm_Chr4g0422481 RchiOBHm_Chr5g0012141 RchiOBHm_Chr5g0019851 RchiOBHm_Chr5g0038651 RchiOBHm_Chr5g0042901 RchiOBHm_Chr5g0043951 RchiOBHm_Chr6g0253561 RchiOBHm_Chr7g0213551 RchiOBHm_Chr7g0220031 RchiOBHm_Chr7g0221581 RchiOBHm_Chr7g0230091 RchiOBHm_Chr7g0235291
rosa_laevigata RLG00000001336 RLG00000002469 RLG00000008084 RLG00000009350 RLG00000012956 RLG00000014177 RLG00000016845 RLG00000017722 RLG00000018937 RLG00000018957 RLG00000031697 RLG00000032070 RLG00000034648
rosa_multiflora Rmu_co8164630.1_g000001 Rmu_co8485123.1_g000001 Rmu_sc0000023.1_g000003 Rmu_sc0000068.1_g000010 Rmu_sc0000084.1_g000004 Rmu_sc0000186.1_g000020 Rmu_sc0000258.1_g000043 Rmu_sc0000305.1_g000013 Rmu_sc0000305.1_g000014 Rmu_sc0000340.1_g000040 Rmu_sc0000452.1_g000008 Rmu_sc0000470.1_g000022 Rmu_sc0000570.1_g000013 Rmu_sc0000570.1_g000014 Rmu_sc0000765.1_g000038 Rmu_sc0000774.1_g000029 Rmu_sc0000805.1_g000011 Rmu_sc0000830.1_g000067 Rmu_sc0000831.1_g000008 Rmu_sc0000918.1_g000005 Rmu_sc0000982.1_g000024 Rmu_sc0000982.1_g000025 Rmu_sc0001035.1_g000071 Rmu_sc0001035.1_g000072 Rmu_sc0001068.1_g000017 Rmu_sc0001136.1_g000015 Rmu_sc0001136.1_g000016 Rmu_sc0001386.1_g000028 Rmu_sc0001417.1_g000009 Rmu_sc0001598.1_g000010 Rmu_sc0001886.1_g000001 Rmu_sc0002129.1_g000043 Rmu_sc0002162.1_g000012 Rmu_sc0002252.1_g000006 Rmu_sc0002321.1_g000003 Rmu_sc0002344.1_g000013 Rmu_sc0002344.1_g000015 Rmu_sc0002592.1_g000004 Rmu_sc0002592.1_g000005 Rmu_sc0002691.1_g000042 Rmu_sc0002786.1_g000023 Rmu_sc0002845.1_g000019 Rmu_sc0002968.1_g000022 Rmu_sc0002988.1_g000001 Rmu_sc0003131.1_g000015 Rmu_sc0003180.1_g000017 Rmu_sc0003275.1_g000005 Rmu_sc0003275.1_g000075 Rmu_sc0003337.1_g000008 Rmu_sc0003830.1_g000005 Rmu_sc0004032.1_g000018 Rmu_sc0004277.1_g000068 Rmu_sc0004366.1_g000003 Rmu_sc0004371.1_g000005 Rmu_sc0004413.1_g000040 Rmu_sc0004898.1_g000009 Rmu_sc0004898.1_g000010 Rmu_sc0004929.1_g000002 Rmu_sc0005065.1_g000007 Rmu_sc0005065.1_g000008 Rmu_sc0005261.1_g000010 Rmu_sc0005375.1_g000019 Rmu_sc0005497.1_g000012 Rmu_sc0005704.1_g000001 Rmu_sc0005834.1_g000013 Rmu_sc0006076.1_g000004 Rmu_sc0006311.1_g000010 Rmu_sc0006669.1_g000018 Rmu_sc0006720.1_g000005 Rmu_sc0006841.1_g000002 Rmu_sc0006854.1_g000004 Rmu_sc0006854.1_g000005 Rmu_sc0006999.1_g000008 Rmu_sc0007415.1_g000001 Rmu_sc0007415.1_g000031 Rmu_sc0007650.1_g000004 Rmu_sc0007754.1_g000003 Rmu_sc0007912.1_g000004 Rmu_sc0007912.1_g000005 Rmu_sc0008429.1_g000004 Rmu_sc0009780.1_g000018 Rmu_sc0010062.1_g000002 Rmu_sc0010104.1_g000001 Rmu_sc0010647.1_g000002 Rmu_sc0010824.1_g000009 Rmu_sc0011112.1_g000010 Rmu_sc0013354.1_g000004 Rmu_sc0014685.1_g000005 Rmu_sc0014685.1_g000006 Rmu_sc0014882.1_g000002 Rmu_sc0019879.1_g000004 Rmu_sc0020359.1_g000006 Rmu_sc0020945.1_g000003 Rmu_sc0023467.1_g000001 Rmu_sc0025019.1_g000001 Rmu_sc0026446.1_g000002 Rmu_sc0027500.1_g000001 Rmu_sc0027830.1_g000001 Rmu_sc0028318.1_g000001 Rmu_sc0028858.1_g000002 Rmu_sc0031772.1_g000001 Rmu_sc0032192.1_g000001 Rmu_sc0033789.1_g000001 Rmu_sc0034922.1_g000001 Rmu_ssc0000295.1_g000057 Rmu_ssc0000309.1_g000034 Rmu_ssc0000420.1_g000035 Rmu_ssc0000423.1_g000017 Rmu_ssc0000470.1_g000004
rosa_roxburghii Rroxscaffold_1G00016870 Rroxscaffold_1G00024230 Rroxscaffold_1G00037110 Rroxscaffold_1G00037130 Rroxscaffold_2G00137090 Rroxscaffold_2G00137100 Rroxscaffold_3G00221680 Rroxscaffold_3G00224180 Rroxscaffold_3G00226070 Rroxscaffold_4G00291380 Rroxscaffold_4G00293060 Rroxscaffold_4G00319010 Rroxscaffold_5G00347090 Rroxscaffold_5G00355090 Rroxscaffold_5G00356950 Rroxscaffold_7G00193500 Rroxscaffold_7G00207010 Rroxscaffold_7G00207130 Rroxscaffold_7G00207140
rosa_rugosa Rorug01G0086400.1 Rorug01G0087900 Rorug01G0095400 Rorug01G0105300 Rorug01G0107000 Rorug01G0152600.1 Rorug01G0152700.1 Rorug02G0010200 Rorug02G0010200 Rorug02G0157800 Rorug02G0157900 Rorug02G0248300 Rorug02G0249100 Rorug02G0249200 Rorug02G0277800 Rorug02G0277900 Rorug02G0324700 Rorug02G0330600 Rorug02G0510200 Rorug03G0162000 Rorug03G0171700 Rorug03G0189100 Rorug03G0267900 Rorug03G0339000 Rorug04G0012700 Rorug04G0050900 Rorug04G0152300 Rorug04G0283700 Rorug05G0043600 Rorug05G0151200 Rorug05G0152700 Rorug05G0158400 Rorug05G0209100 Rorug05G0209100 Rorug05G0224900 Rorug05G0227700 Rorug05G0244300.1 Rorug05G0251800 Rorug05G0293600 Rorug05G0335900 Rorug05G0582400 Rorug06G0045400 Rorug06G0063700 Rorug06G0082300 Rorug06G0173900 Rorug06G0190800 Rorug06G0480100 Rorug07G0057100 Rorug07G0117700 Rorug07G0148300 Rorug07G0190900
rosa_samantha Rh1BG184600 Rh1CG100800 Rh1CG353300 Rh1DG147400 Rh1DG214200 Rh2AG491700 Rh2BG022000 Rh2BG196400 Rh2BG209900 Rh2BG331800 Rh2CG478100 Rh2DG096100 Rh2DG303100 Rh3AG125300 Rh3AG335300 Rh3BG274800 Rh3CG243100 Rh3CG243200 Rh3CG243300 Rh3CG365100 Rh3CG369400 Rh3DG341600 Rh3DG370500 Rh4AG060300 Rh4AG088400 Rh4AG357100 Rh4CG308700 Rh4CG440700 Rh4DG362800 Rh4DG421700 Rh5AG182900 Rh5AG284500 Rh5AG293500 Rh5AG440000 Rh5AG445200 Rh5AG512000 Rh5AG522000 Rh5BG294100 Rh5BG301500 Rh5BG347300 Rh5CG103200 Rh5CG155400 Rh5CG212800 Rh5CG231400 Rh5CG253700 Rh5CG329100 Rh5CG471500 Rh5DG304000 Rh5DG310700 Rh5DG466000 Rh6AG473800 Rh6BG022600 Rh6BG120300 Rh6BG292800 Rh6CG118500 Rh6CG366400 Rh6DG106900 Rh7BG324000 Rh7BG382800 Rh7DG221900 Rh7DG256900 Rh7DG259800 Rh7DG259900 Rh7DG329400 Rh7DG329500 Rh7DG351700 Rh7DG351800
rosa_wichuraiana Rw0G008220 Rw0G010100 Rw0G011420 Rw0G017230 Rw0G017240 Rw0G023340 Rw1G007820 Rw1G019090 Rw1G019100 Rw1G026940 Rw2G002550 Rw2G018570 Rw2G021650 Rw2G024850 Rw2G036390 Rw2G041200 Rw2G042490 Rw3G024200 Rw3G027660 Rw3G029100 Rw3G029110 Rw4G005930 Rw4G010720 Rw4G014560 Rw4G017210 Rw4G020740 Rw5G003740 Rw5G008130 Rw5G011060 Rw5G012210 Rw5G014240 Rw5G015950 Rw5G016590 Rw5G017570 Rw5G019040 Rw5G027200 Rw5G030010 Rw5G036030 Rw6G001380 Rw6G001420 Rw6G006520 Rw6G007020 Rw6G009200 Rw6G009300 Rw6G020110 Rw6G023690 Rw6G030650 Rw6G041310 Rw7G005190 Rw7G012150 Rw7G014860 Rw7G014870 Rw7G020130 Rw7G024500 Rw7G029450 Rw7G029460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 792
AarI CACCTGC 2 cut(s) 2024, 2055
AasI GACNNNNNNGTC 3 cut(s) 191, 254, 1627
Acc36I ACCTGC 2 cut(s) 2024, 2055
AccI GTMKAC 3 cut(s) 854, 1687, 2005
AccII CGCG 3 cut(s) 106, 591, 646
AccIII TCCGGA 1 cut(s) 657
AciI CCGC 8 cut(s) 106, 530, 1171, 1207, 1508, 1576, 1768, 1838
AclWI GGATC 5 cut(s) 1014, 1027, 1844, 2017, 2030
AcoI YGGCCR 1 cut(s) 1172
AcsI RAATTY 9 cut(s) 96, 425, 446, 648, 711, 822, 930, 989, 1439
AcuI CTGAAG 1 cut(s) 1140
AcyI GRCGYC 1 cut(s) 1609
AfiI CCNNNNNNNGG 4 cut(s) 368, 1651, 1711, 2033
AjnI CCWGG 3 cut(s) 195, 1095, 1999
AjuI GAANNNNNNNTTGG 2 cut(s) 587, 619
AluBI AGCT 9 cut(s) 8, 118, 564, 1229, 1326, 1546, 1585, 1660, 1672
AluI AGCT 9 cut(s) 8, 118, 564, 1229, 1326, 1546, 1585, 1660, 1672
Alw21I GWGCWC 2 cut(s) 1499, 1816
Alw26I GTCTC 1 cut(s) 390
Alw44I GTGCAC 1 cut(s) 1812
AlwI GGATC 5 cut(s) 1014, 1027, 1844, 2017, 2030
Aor13HI TCCGGA 1 cut(s) 657
AoxI GGCC 2 cut(s) 1172, 1216
ApaLI GTGCAC 1 cut(s) 1812
ApeKI GCWGC 5 cut(s) 8, 1546, 1601, 1616, 1826
ApoI RAATTY 9 cut(s) 96, 425, 446, 648, 711, 822, 930, 989, 1439
ArsI GACNNNNNNTTYG 4 cut(s) 674, 706, 990, 1022
Asp700I GAANNNNTTC 1 cut(s) 1230
AspLEI GCGC 3 cut(s) 593, 646, 1061
AsuHPI GGTGA 4 cut(s) 1183, 1591, 1859, 2048
AsuII TTCGAA 1 cut(s) 715
BaeGI GKGCMC 1 cut(s) 1816
BamHI GGATCC 2 cut(s) 1019, 2022
BbsI GAAGAC 3 cut(s) 404, 896, 1455
Bbv12I GWGCWC 2 cut(s) 1499, 1816
BbvI GCAGC 4 cut(s) 1533, 1588, 1628, 1838
BccI CCATC 6 cut(s) 172, 667, 1010, 1315, 1412, 1838
BceAI ACGGC 1 cut(s) 850
BcgI CGANNNNNNTGC 2 cut(s) 620, 654
BciT130I CCWGG 3 cut(s) 197, 1097, 2001
BcoDI GTCTC 1 cut(s) 390
BfaI CTAG 2 cut(s) 119, 1445
BfmI CTRYAG 3 cut(s) 1107, 1903, 2031
BfuAI ACCTGC 2 cut(s) 2024, 2055
BisI GCNGC 6 cut(s) 9, 1172, 1547, 1602, 1617, 1827
BlsI GCNGC 6 cut(s) 10, 1173, 1548, 1603, 1618, 1828
Bme1390I CCNGG 3 cut(s) 197, 1097, 2001
BmiI GGNNCC 3 cut(s) 1021, 1869, 2024
BmrFI CCNGG 3 cut(s) 197, 1097, 2001
BmrI ACTGGG 2 cut(s) 1074, 1702
BmsI GCATC 2 cut(s) 262, 868
BmuI ACTGGG 2 cut(s) 1074, 1702
BpiI GAAGAC 3 cut(s) 404, 896, 1455
BplI GAGNNNNNCTC 2 cut(s) 308, 340
Bpu14I TTCGAA 1 cut(s) 715
BpuEI CTTGAG 2 cut(s) 351, 938
Bsa29I ATCGAT 1 cut(s) 2051
BsaAI YACGTR 2 cut(s) 75, 2012
BsaBI GATNNNNATC 1 cut(s) 1306
BsaHI GRCGYC 1 cut(s) 1609
BsaJI CCNNGG 4 cut(s) 1081, 1095, 1413, 1999
BsaWI WCCGGW 1 cut(s) 657
BsaXI ACNNNNNCTCC 4 cut(s) 956, 986, 1646, 1676
Bsc4I CCNNNNNNNGG 4 cut(s) 368, 1651, 1711, 2033
Bse1I ACTGG 3 cut(s) 1069, 1340, 1697
Bse8I GATNNNNATC 1 cut(s) 1306
BseAI TCCGGA 1 cut(s) 657
BseBI CCWGG 3 cut(s) 197, 1097, 2001
BseCI ATCGAT 1 cut(s) 2051
BseDI CCNNGG 4 cut(s) 1081, 1095, 1413, 1999
BseGI GGATG 6 cut(s) 196, 295, 343, 1423, 1702, 1846
BseJI GATNNNNATC 1 cut(s) 1306
BseLI CCNNNNNNNGG 4 cut(s) 368, 1651, 1711, 2033
BseMII CTCAG 2 cut(s) 267, 872
BseNI ACTGG 3 cut(s) 1069, 1340, 1697
BseRI GAGGAG 2 cut(s) 351, 354
BseSI GKGCMC 1 cut(s) 1816
BseXI GCAGC 4 cut(s) 1533, 1588, 1628, 1838
BseYI CCCAGC 1 cut(s) 1054
BsgI GTGCAG 1 cut(s) 1635
Bsh1236I CGCG 3 cut(s) 106, 591, 646
Bsh1285I CGRYCG 2 cut(s) 1207, 1709
BshFI GGCC 2 cut(s) 1174, 1218
BshVI ATCGAT 1 cut(s) 2051
BsiEI CGRYCG 2 cut(s) 1207, 1709
BsiHKAI GWGCWC 2 cut(s) 1499, 1816
BsiSI CCGG 1 cut(s) 658
BslFI GGGAC 2 cut(s) 467, 1904
BslI CCNNNNNNNGG 4 cut(s) 368, 1651, 1711, 2033
BsmAI GTCTC 1 cut(s) 390
BsmFI GGGAC 2 cut(s) 467, 1904
BsnI GGCC 2 cut(s) 1174, 1218
Bsp119I TTCGAA 1 cut(s) 715
Bsp1286I GDGCHC 2 cut(s) 1499, 1816
Bsp13I TCCGGA 1 cut(s) 657
Bsp143I GATC 9 cut(s) 410, 1019, 1706, 1756, 1849, 1951, 2022, 2048, 2052
BspACI CCGC 8 cut(s) 106, 530, 1171, 1207, 1508, 1576, 1768, 1838
BspANI GGCC 2 cut(s) 1174, 1218
BspCNI CTCAG 2 cut(s) 268, 871
BspDI ATCGAT 1 cut(s) 2051
BspEI TCCGGA 1 cut(s) 657
BspFNI CGCG 3 cut(s) 106, 591, 646
BspHI TCATGA 3 cut(s) 388, 540, 1732
BspLI GGNNCC 3 cut(s) 1021, 1869, 2024
BspMAI CTGCAG 1 cut(s) 2035
BspMI ACCTGC 2 cut(s) 2024, 2055
BspPI GGATC 5 cut(s) 1014, 1027, 1844, 2017, 2030
BspT104I TTCGAA 1 cut(s) 715
BsrI ACTGG 3 cut(s) 1069, 1340, 1697
BssECI CCNNGG 4 cut(s) 1081, 1095, 1413, 1999
BssMI GATC 9 cut(s) 410, 1019, 1706, 1756, 1849, 1951, 2022, 2048, 2052
BssNAI GTATAC 1 cut(s) 855
BssNI GRCGYC 1 cut(s) 1609
BssT1I CCWWGG 2 cut(s) 1081, 1413
Bst1107I GTATAC 1 cut(s) 855
Bst2UI CCWGG 3 cut(s) 197, 1097, 2001
Bst4CI ACNGT 5 cut(s) 46, 207, 268, 911, 1882
Bst6I CTCTTC 3 cut(s) 279, 309, 959
BstACI GRCGYC 1 cut(s) 1609
BstBAI YACGTR 2 cut(s) 75, 2012
BstBI TTCGAA 1 cut(s) 715
BstC8I GCNNGC 3 cut(s) 116, 549, 566
BstDEI CTNAG 3 cut(s) 276, 858, 1147
BstEII GGTNACC 2 cut(s) 1076, 1961
BstENI CCTNNNNNAGG 1 cut(s) 366
BstF5I GGATG 6 cut(s) 196, 295, 343, 1423, 1702, 1846
BstFNI CGCG 3 cut(s) 106, 591, 646
BstHHI GCGC 3 cut(s) 593, 646, 1061
BstKTI GATC 9 cut(s) 413, 1022, 1709, 1759, 1852, 1954, 2025, 2051, 2055
BstMAI GTCTC 1 cut(s) 390
BstMBI GATC 9 cut(s) 410, 1019, 1706, 1756, 1849, 1951, 2022, 2048, 2052
BstMCI CGRYCG 2 cut(s) 1207, 1709
BstMWI GCNNNNNNNGC 6 cut(s) 17, 1215, 1546, 1582, 1826, 1835
BstNI CCWGG 3 cut(s) 197, 1097, 2001
BstNSI RCATGY 3 cut(s) 551, 1776, 1820
BstPI GGTNACC 2 cut(s) 1076, 1961
BstSCI CCNGG 3 cut(s) 195, 1095, 1999
BstSFI CTRYAG 3 cut(s) 1107, 1903, 2031
BstSLI GKGCMC 1 cut(s) 1816
BstSNI TACGTA 1 cut(s) 75
BstUI CGCG 3 cut(s) 106, 591, 646
BstV1I GCAGC 4 cut(s) 1533, 1588, 1628, 1838
BstV2I GAAGAC 3 cut(s) 404, 896, 1455
BstX2I RGATCY 2 cut(s) 1019, 2022
BstYI RGATCY 2 cut(s) 1019, 2022
BstZ17I GTATAC 1 cut(s) 855
Bsu15I ATCGAT 1 cut(s) 2051
BsuRI GGCC 2 cut(s) 1174, 1218
BsuTUI ATCGAT 1 cut(s) 2051
BtgZI GCGATG 1 cut(s) 852
BtsCI GGATG 6 cut(s) 196, 295, 343, 1423, 1702, 1846
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 4 cut(s) 57, 907, 1690, 1887
BveI ACCTGC 2 cut(s) 2024, 2055
Cac8I GCNNGC 3 cut(s) 116, 549, 566
CciI TCATGA 3 cut(s) 388, 540, 1732
CfoI GCGC 3 cut(s) 593, 646, 1061
ClaI ATCGAT 1 cut(s) 2051
CseI GACGC 1 cut(s) 1598
CspCI CAANNNNNGTGG 4 cut(s) 27, 62, 1402, 1437
DdeI CTNAG 3 cut(s) 276, 858, 1147
DpnI GATC 9 cut(s) 412, 1021, 1708, 1758, 1851, 1953, 2024, 2050, 2054
DpnII GATC 9 cut(s) 410, 1019, 1706, 1756, 1849, 1951, 2022, 2048, 2052
DrdI GACNNNNNNGTC 3 cut(s) 191, 254, 1627
DseDI GACNNNNNNGTC 3 cut(s) 191, 254, 1627
EaeI YGGCCR 1 cut(s) 1172
Eam1104I CTCTTC 3 cut(s) 279, 309, 959
EarI CTCTTC 3 cut(s) 279, 309, 959
EciI GGCGGA 1 cut(s) 1523
Eco105I TACGTA 1 cut(s) 75
Eco130I CCWWGG 2 cut(s) 1081, 1413
Eco147I AGGCCT 1 cut(s) 1218
Eco32I GATATC 1 cut(s) 244
Eco57I CTGAAG 1 cut(s) 1140
Eco91I GGTNACC 2 cut(s) 1076, 1961
EcoNI CCTNNNNNAGG 1 cut(s) 366
EcoO65I GGTNACC 2 cut(s) 1076, 1961
EcoRI GAATTC 1 cut(s) 648
EcoRII CCWGG 3 cut(s) 195, 1095, 1999
EcoRV GATATC 1 cut(s) 244
EcoT14I CCWWGG 2 cut(s) 1081, 1413
EcoT22I ATGCAT 2 cut(s) 799, 883
ErhI CCWWGG 2 cut(s) 1081, 1413
FalI AAGNNNNNCTT 4 cut(s) 938, 970, 1206, 1238
FaqI GGGAC 2 cut(s) 467, 1904
FauI CCCGC 2 cut(s) 1569, 1775
FauNDI CATATG 3 cut(s) 86, 1398, 1861
FblI GTMKAC 3 cut(s) 854, 1687, 2005
Fnu4HI GCNGC 6 cut(s) 9, 1172, 1547, 1602, 1617, 1827
FokI GGATG 6 cut(s) 203, 302, 350, 1430, 1709, 1853
Fsp4HI GCNGC 6 cut(s) 9, 1172, 1547, 1602, 1617, 1827
FspBI CTAG 2 cut(s) 119, 1445
GlaI GCGC 3 cut(s) 592, 645, 1060
GluI GCNGC 6 cut(s) 9, 1172, 1547, 1602, 1617, 1827
GsaI CCCAGC 1 cut(s) 1058
HaeIII GGCC 2 cut(s) 1174, 1218
HapII CCGG 1 cut(s) 658
HgaI GACGC 1 cut(s) 1598
HhaI GCGC 3 cut(s) 593, 646, 1061
Hin1I GRCGYC 1 cut(s) 1609
Hin6I GCGC 3 cut(s) 591, 644, 1059
HinP1I GCGC 3 cut(s) 591, 644, 1059
HincII GTYRAC 3 cut(s) 141, 1114, 1632
HindII GTYRAC 3 cut(s) 141, 1114, 1632
HpaI GTTAAC 1 cut(s) 141
HpaII CCGG 1 cut(s) 658
HphI GGTGA 4 cut(s) 1183, 1591, 1859, 2048
Hpy166II GTNNAC 8 cut(s) 141, 832, 855, 1114, 1632, 1688, 1814, 2006
Hpy188I TCNGA 7 cut(s) 184, 1120, 1204, 1255, 1296, 1930, 2094
Hpy8I GTNNAC 8 cut(s) 141, 832, 855, 1114, 1632, 1688, 1814, 2006
Hpy99I CGWCG 4 cut(s) 853, 929, 1614, 1714
HpyAV CCTTC 8 cut(s) 548, 974, 1204, 1229, 1560, 1756, 1838, 2013
HpyCH4III ACNGT 5 cut(s) 46, 207, 268, 911, 1882
HpyCH4IV ACGT 3 cut(s) 74, 940, 2011
HpyF10VI GCNNNNNNNGC 6 cut(s) 17, 1215, 1546, 1582, 1826, 1835
HpyF3I CTNAG 3 cut(s) 276, 858, 1147
HpySE526I ACGT 3 cut(s) 74, 940, 2011
Hsp92I GRCGYC 1 cut(s) 1609
HspAI GCGC 3 cut(s) 591, 644, 1059
Kpn2I TCCGGA 1 cut(s) 657
KspAI GTTAAC 1 cut(s) 141
Kzo9I GATC 9 cut(s) 410, 1019, 1706, 1756, 1849, 1951, 2022, 2048, 2052
LmnI GCTCC 3 cut(s) 364, 517, 1375
Lsp1109I GCAGC 4 cut(s) 1533, 1588, 1628, 1838
LweI GCATC 2 cut(s) 262, 868
MaeI CTAG 2 cut(s) 119, 1445
MaeII ACGT 3 cut(s) 74, 940, 2011
MaeIII GTNAC 7 cut(s) 439, 523, 983, 1076, 1331, 1379, 1961
MalI GATC 9 cut(s) 412, 1021, 1708, 1758, 1851, 1953, 2024, 2050, 2054
MboI GATC 9 cut(s) 410, 1019, 1706, 1756, 1849, 1951, 2022, 2048, 2052
MfeI CAATTG 3 cut(s) 150, 1132, 1559
MflI RGATCY 2 cut(s) 1019, 2022
MhlI GDGCHC 2 cut(s) 1499, 1816
MlyI GAGTC 5 cut(s) 29, 648, 945, 1109, 1520
MmeI TCCRAC 1 cut(s) 1227
Mph1103I ATGCAT 2 cut(s) 799, 883
MroI TCCGGA 1 cut(s) 657
MroXI GAANNNNTTC 1 cut(s) 1230
MseI TTAA 5 cut(s) 63, 140, 612, 1566, 1974
MslI CAYNNNNRTG 4 cut(s) 768, 837, 1397, 1695
MspA1I CMGCKG 1 cut(s) 530
MspI CCGG 1 cut(s) 658
MspR9I CCNGG 3 cut(s) 197, 1097, 2001
MunI CAATTG 3 cut(s) 150, 1132, 1559
MvaI CCWGG 3 cut(s) 197, 1097, 2001
MvnI CGCG 3 cut(s) 106, 591, 646
MwoI GCNNNNNNNGC 6 cut(s) 17, 1215, 1546, 1582, 1826, 1835
NdeI CATATG 3 cut(s) 86, 1398, 1861
NdeII GATC 9 cut(s) 410, 1019, 1706, 1756, 1849, 1951, 2022, 2048, 2052
NlaIV GGNNCC 3 cut(s) 1021, 1869, 2024
NsiI ATGCAT 2 cut(s) 799, 883
NspI RCATGY 3 cut(s) 551, 1776, 1820
NspV TTCGAA 1 cut(s) 715
PaeI GCATGC 1 cut(s) 551
PagI TCATGA 3 cut(s) 388, 540, 1732
PaqCI CACCTGC 2 cut(s) 2024, 2055
PceI AGGCCT 1 cut(s) 1218
PcsI WCGNNNNNNNCGW 1 cut(s) 946
PdmI GAANNNNTTC 1 cut(s) 1230
PfeI GAWTC 5 cut(s) 586, 600, 845, 1250, 1428
PkrI GCNGC 6 cut(s) 10, 1173, 1548, 1603, 1618, 1828
Ple19I CGATCG 1 cut(s) 1709
PleI GAGTC 5 cut(s) 29, 648, 945, 1109, 1519
PpsI GAGTC 5 cut(s) 29, 648, 945, 1109, 1519
Ppu21I YACGTR 2 cut(s) 75, 2012
PsiI TTATAA 1 cut(s) 792
Psp6I CCWGG 3 cut(s) 195, 1095, 1999
PspEI GGTNACC 2 cut(s) 1076, 1961
PspFI CCCAGC 1 cut(s) 1054
PspGI CCWGG 3 cut(s) 195, 1095, 1999
PspN4I GGNNCC 3 cut(s) 1021, 1869, 2024
PstI CTGCAG 1 cut(s) 2035
PsuI RGATCY 2 cut(s) 1019, 2022
PvuI CGATCG 1 cut(s) 1709
RseI CAYNNNNRTG 4 cut(s) 768, 837, 1397, 1695
SaqAI TTAA 5 cut(s) 63, 140, 612, 1566, 1974
SatI GCNGC 6 cut(s) 9, 1172, 1547, 1602, 1617, 1827
Sau3AI GATC 9 cut(s) 410, 1019, 1706, 1756, 1849, 1951, 2022, 2048, 2052
SchI GAGTC 5 cut(s) 29, 648, 945, 1109, 1520
ScrFI CCNGG 3 cut(s) 197, 1097, 2001
SduI GDGCHC 2 cut(s) 1499, 1816
SfaNI GCATC 2 cut(s) 262, 868
SfcI CTRYAG 3 cut(s) 1107, 1903, 2031
SfuI TTCGAA 1 cut(s) 715
SmiMI CAYNNNNRTG 4 cut(s) 768, 837, 1397, 1695
SmlI CTYRAG 2 cut(s) 366, 917
SmoI CTYRAG 2 cut(s) 366, 917
SnaBI TACGTA 1 cut(s) 75
SphI GCATGC 1 cut(s) 551
SseBI AGGCCT 1 cut(s) 1218
SsiI CCGC 8 cut(s) 106, 530, 1171, 1207, 1508, 1576, 1768, 1838
SspI AATATT 1 cut(s) 1156
SspMI CTAG 2 cut(s) 119, 1445
StuI AGGCCT 1 cut(s) 1218
StyD4I CCNGG 3 cut(s) 195, 1095, 1999
StyI CCWWGG 2 cut(s) 1081, 1413
TaaI ACNGT 5 cut(s) 46, 207, 268, 911, 1882
TaiI ACGT 3 cut(s) 77, 943, 2014
TaqI TCGA 8 cut(s) 246, 270, 429, 640, 652, 715, 1709, 2051
TauI GCSGC 1 cut(s) 1174
TfiI GAWTC 5 cut(s) 586, 600, 845, 1250, 1428
Tru1I TTAA 5 cut(s) 63, 140, 612, 1566, 1974
Tru9I TTAA 5 cut(s) 63, 140, 612, 1566, 1974
TscAI CASTG 4 cut(s) 57, 914, 1697, 1887
TseI GCWGC 5 cut(s) 8, 1546, 1601, 1616, 1826
TspGWI ACGGA 1 cut(s) 1727
TspRI CASTG 4 cut(s) 57, 914, 1697, 1887
VneI GTGCAC 1 cut(s) 1812
XagI CCTNNNNNAGG 1 cut(s) 366
XapI RAATTY 9 cut(s) 96, 425, 446, 648, 711, 822, 930, 989, 1439
XbaI TCTAGA 1 cut(s) 1444
XceI RCATGY 3 cut(s) 551, 1776, 1820
XcmI CCANNNNNNNNNTGG 2 cut(s) 28, 1464
XmiI GTMKAC 3 cut(s) 854, 1687, 2005
XmnI GAANNNNTTC 1 cut(s) 1230
XspI CTAG 2 cut(s) 119, 1445
Zsp2I ATGCAT 2 cut(s) 799, 883
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.