isoform X1
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 358, 411 |
| AclI | AACGTT | 1 cut(s) | 133 |
| AclWI | GGATC | 1 cut(s) | 84 |
| AcoI | YGGCCR | 2 cut(s) | 3, 260 |
| AcuI | CTGAAG | 1 cut(s) | 194 |
| AgsI | TTSAA | 2 cut(s) | 355, 364 |
| AjnI | CCWGG | 3 cut(s) | 32, 223, 347 |
| AluBI | AGCT | 3 cut(s) | 243, 391, 441 |
| AluI | AGCT | 3 cut(s) | 243, 391, 441 |
| AlwI | GGATC | 1 cut(s) | 84 |
| Ama87I | CYCGRG | 1 cut(s) | 338 |
| AoxI | GGCC | 4 cut(s) | 3, 260, 332, 344 |
| ApeKI | GCWGC | 2 cut(s) | 402, 441 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 359 |
| AspS9I | GGNCC | 1 cut(s) | 345 |
| AsuC2I | CCSGG | 2 cut(s) | 339, 340 |
| AvaI | CYCGRG | 1 cut(s) | 338 |
| BaeGI | GKGCMC | 1 cut(s) | 425 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BbsI | GAAGAC | 1 cut(s) | 276 |
| BbvI | GCAGC | 2 cut(s) | 414, 428 |
| BccI | CCATC | 3 cut(s) | 67, 100, 178 |
| BceAI | ACGGC | 1 cut(s) | 390 |
| BciT130I | CCWGG | 3 cut(s) | 34, 225, 349 |
| BcnI | CCSGG | 2 cut(s) | 339, 340 |
| BfaI | CTAG | 1 cut(s) | 219 |
| BfmI | CTRYAG | 1 cut(s) | 244 |
| BisI | GCNGC | 2 cut(s) | 403, 442 |
| BlsI | GCNGC | 2 cut(s) | 404, 443 |
| Bme1390I | CCNGG | 5 cut(s) | 34, 225, 339, 340, 349 |
| BmeT110I | CYCGRG | 1 cut(s) | 338 |
| BmgT120I | GGNCC | 1 cut(s) | 345 |
| BmrFI | CCNGG | 5 cut(s) | 34, 225, 339, 340, 349 |
| BmsI | GCATC | 1 cut(s) | 45 |
| BpiI | GAAGAC | 1 cut(s) | 276 |
| BpuEI | CTTGAG | 1 cut(s) | 65 |
| BpuMI | CCSGG | 2 cut(s) | 339, 340 |
| BsaJI | CCNNGG | 3 cut(s) | 223, 338, 347 |
| Bse118I | RCCGGY | 1 cut(s) | 58 |
| BseBI | CCWGG | 3 cut(s) | 34, 225, 349 |
| BseDI | CCNNGG | 3 cut(s) | 223, 338, 347 |
| BseGI | GGATG | 1 cut(s) | 127 |
| BseRI | GAGGAG | 1 cut(s) | 130 |
| BseSI | GKGCMC | 1 cut(s) | 425 |
| BseXI | GCAGC | 2 cut(s) | 414, 428 |
| BsgI | GTGCAG | 2 cut(s) | 200, 427 |
| BshFI | GGCC | 4 cut(s) | 5, 262, 334, 346 |
| BsiHKCI | CYCGRG | 1 cut(s) | 338 |
| BsiSI | CCGG | 3 cut(s) | 59, 259, 339 |
| BslFI | GGGAC | 1 cut(s) | 25 |
| BsmFI | GGGAC | 1 cut(s) | 25 |
| BsnI | GGCC | 4 cut(s) | 5, 262, 334, 346 |
| BsoBI | CYCGRG | 1 cut(s) | 338 |
| Bsp1286I | GDGCHC | 1 cut(s) | 425 |
| Bsp143I | GATC | 1 cut(s) | 76 |
| BspACI | CCGC | 2 cut(s) | 358, 411 |
| BspANI | GGCC | 4 cut(s) | 5, 262, 334, 346 |
| BspPI | GGATC | 1 cut(s) | 84 |
| BspQI | GCTCTTC | 2 cut(s) | 233, 431 |
| BsrFI | RCCGGY | 1 cut(s) | 58 |
| BssAI | RCCGGY | 1 cut(s) | 58 |
| BssECI | CCNNGG | 3 cut(s) | 223, 338, 347 |
| BssMI | GATC | 1 cut(s) | 76 |
| Bst2UI | CCWGG | 3 cut(s) | 34, 225, 349 |
| Bst4CI | ACNGT | 1 cut(s) | 248 |
| Bst6I | CTCTTC | 3 cut(s) | 233, 323, 431 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 408 |
| BstF5I | GGATG | 1 cut(s) | 127 |
| BstKTI | GATC | 1 cut(s) | 79 |
| BstMBI | GATC | 1 cut(s) | 76 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 55, 100, 178, 408 |
| BstNI | CCWGG | 3 cut(s) | 34, 225, 349 |
| BstSCI | CCNGG | 5 cut(s) | 32, 223, 337, 338, 347 |
| BstSFI | CTRYAG | 1 cut(s) | 244 |
| BstSLI | GKGCMC | 1 cut(s) | 425 |
| BstV1I | GCAGC | 2 cut(s) | 414, 428 |
| BstV2I | GAAGAC | 1 cut(s) | 276 |
| BsuRI | GGCC | 4 cut(s) | 5, 262, 334, 346 |
| BtsCI | GGATG | 1 cut(s) | 127 |
| BtsIMutI | CAGTG | 1 cut(s) | 211 |
| Cfr10I | RCCGGY | 1 cut(s) | 58 |
| Cfr13I | GGNCC | 1 cut(s) | 345 |
| Cfr9I | CCCGGG | 1 cut(s) | 338 |
| DpnI | GATC | 1 cut(s) | 78 |
| DpnII | GATC | 1 cut(s) | 76 |
| EaeI | YGGCCR | 2 cut(s) | 3, 260 |
| Eam1104I | CTCTTC | 3 cut(s) | 233, 323, 431 |
| EarI | CTCTTC | 3 cut(s) | 233, 323, 431 |
| Eco57I | CTGAAG | 1 cut(s) | 194 |
| Eco88I | CYCGRG | 1 cut(s) | 338 |
| EcoRII | CCWGG | 3 cut(s) | 32, 223, 347 |
| FaiI | YATR | 6 cut(s) | 64, 71, 234, 281, 311, 429 |
| FaqI | GGGAC | 1 cut(s) | 25 |
| Fnu4HI | GCNGC | 2 cut(s) | 403, 442 |
| FokI | GGATG | 1 cut(s) | 134 |
| Fsp4HI | GCNGC | 2 cut(s) | 403, 442 |
| FspBI | CTAG | 1 cut(s) | 219 |
| GluI | GCNGC | 2 cut(s) | 403, 442 |
| HaeIII | GGCC | 4 cut(s) | 5, 262, 334, 346 |
| HapII | CCGG | 3 cut(s) | 59, 259, 339 |
| HinfI | GANTC | 2 cut(s) | 293, 394 |
| HpaII | CCGG | 3 cut(s) | 59, 259, 339 |
| Hpy188I | TCNGA | 4 cut(s) | 81, 292, 327, 383 |
| HpyAV | CCTTC | 2 cut(s) | 169, 332 |
| HpyCH4III | ACNGT | 1 cut(s) | 248 |
| HpyCH4IV | ACGT | 1 cut(s) | 133 |
| HpyCH4V | TGCA | 4 cut(s) | 17, 181, 402, 444 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 55, 100, 178, 408 |
| HpySE526I | ACGT | 1 cut(s) | 133 |
| Kzo9I | GATC | 1 cut(s) | 76 |
| LguI | GCTCTTC | 2 cut(s) | 233, 431 |
| LmnI | GCTCC | 1 cut(s) | 100 |
| Lsp1109I | GCAGC | 2 cut(s) | 414, 428 |
| LweI | GCATC | 1 cut(s) | 45 |
| MaeI | CTAG | 1 cut(s) | 219 |
| MaeII | ACGT | 1 cut(s) | 133 |
| MalI | GATC | 1 cut(s) | 78 |
| MboI | GATC | 1 cut(s) | 76 |
| MboII | GAAGA | 5 cut(s) | 250, 276, 279, 340, 448 |
| MhlI | GDGCHC | 1 cut(s) | 425 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 2 cut(s) | 20, 87 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MmeI | TCCRAC | 2 cut(s) | 116, 361 |
| MnlI | CCTC | 9 cut(s) | 108, 111, 118, 157, 324, 327, 336, 370, 462 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MroXI | GAANNNNTTC | 1 cut(s) | 359 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 2 cut(s) | 27, 90 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspI | CCGG | 3 cut(s) | 59, 259, 339 |
| MspR9I | CCNGG | 5 cut(s) | 34, 225, 339, 340, 349 |
| MvaI | CCWGG | 3 cut(s) | 34, 225, 349 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 55, 100, 178, 408 |
| NciI | CCSGG | 2 cut(s) | 339, 340 |
| NdeII | GATC | 1 cut(s) | 76 |
| PciSI | GCTCTTC | 2 cut(s) | 233, 431 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 403 |
| PdmI | GAANNNNTTC | 1 cut(s) | 359 |
| PfeI | GAWTC | 2 cut(s) | 293, 394 |
| PfoI | TCCNGGA | 1 cut(s) | 32 |
| PkrI | GCNGC | 2 cut(s) | 404, 443 |
| Psp1406I | AACGTT | 1 cut(s) | 133 |
| Psp6I | CCWGG | 3 cut(s) | 32, 223, 347 |
| PspGI | CCWGG | 3 cut(s) | 32, 223, 347 |
| PspPI | GGNCC | 1 cut(s) | 345 |
| SapI | GCTCTTC | 2 cut(s) | 233, 431 |
| SaqAI | TTAA | 2 cut(s) | 27, 90 |
| SatI | GCNGC | 2 cut(s) | 403, 442 |
| Sau3AI | GATC | 1 cut(s) | 76 |
| Sau96I | GGNCC | 1 cut(s) | 345 |
| ScrFI | CCNGG | 5 cut(s) | 34, 225, 339, 340, 349 |
| SduI | GDGCHC | 1 cut(s) | 425 |
| SetI | ASST | 9 cut(s) | 136, 180, 245, 319, 353, 381, 393, 443, 454 |
| SfaNI | GCATC | 1 cut(s) | 45 |
| SfcI | CTRYAG | 1 cut(s) | 244 |
| SmaI | CCCGGG | 1 cut(s) | 340 |
| SmlI | CTYRAG | 1 cut(s) | 44 |
| SmoI | CTYRAG | 1 cut(s) | 44 |
| Sse9I | AATT | 2 cut(s) | 20, 87 |
| SsiI | CCGC | 2 cut(s) | 358, 411 |
| SspMI | CTAG | 1 cut(s) | 219 |
| StyD4I | CCNGG | 5 cut(s) | 32, 223, 337, 338, 347 |
| TaaI | ACNGT | 1 cut(s) | 248 |
| TaiI | ACGT | 1 cut(s) | 136 |
| TasI | AATT | 2 cut(s) | 20, 87 |
| TfiI | GAWTC | 2 cut(s) | 293, 394 |
| Tru1I | TTAA | 2 cut(s) | 27, 90 |
| Tru9I | TTAA | 2 cut(s) | 27, 90 |
| TscAI | CASTG | 1 cut(s) | 211 |
| TseI | GCWGC | 2 cut(s) | 402, 441 |
| TspMI | CCCGGG | 1 cut(s) | 338 |
| TspRI | CASTG | 1 cut(s) | 211 |
| XmaI | CCCGGG | 1 cut(s) | 338 |
| XmnI | GAANNNNTTC | 1 cut(s) | 359 |
| XspI | CTAG | 1 cut(s) | 219 |