ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 853 |
| Acc36I | ACCTGC | 1 cut(s) | 640 |
| AccB1I | GGYRCC | 2 cut(s) | 299, 765 |
| AciI | CCGC | 5 cut(s) | 228, 763, 940, 943, 1176 |
| AcsI | RAATTY | 3 cut(s) | 820, 965, 1111 |
| AfaI | GTAC | 2 cut(s) | 39, 1033 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 571, 722, 864 |
| AflII | CTTAAG | 1 cut(s) | 814 |
| AgsI | TTSAA | 7 cut(s) | 222, 504, 740, 789, 844, 1053, 1200 |
| AjnI | CCWGG | 3 cut(s) | 777, 892, 933 |
| AluBI | AGCT | 7 cut(s) | 320, 541, 631, 693, 903, 1061, 1208 |
| AluI | AGCT | 7 cut(s) | 320, 541, 631, 693, 903, 1061, 1208 |
| AoxI | GGCC | 2 cut(s) | 915, 1150 |
| ApeKI | GCWGC | 3 cut(s) | 320, 646, 711 |
| ApoI | RAATTY | 3 cut(s) | 820, 965, 1111 |
| AspLEI | GCGC | 1 cut(s) | 854 |
| AspS9I | GGNCC | 1 cut(s) | 411 |
| AsuHPI | GGTGA | 2 cut(s) | 457, 1182 |
| AvaII | GGWCC | 1 cut(s) | 411 |
| BanI | GGYRCC | 2 cut(s) | 299, 765 |
| BbsI | GAAGAC | 1 cut(s) | 1094 |
| BbvI | GCAGC | 3 cut(s) | 307, 658, 723 |
| BceAI | ACGGC | 1 cut(s) | 287 |
| BciT130I | CCWGG | 3 cut(s) | 779, 894, 935 |
| BfaI | CTAG | 1 cut(s) | 317 |
| BfmI | CTRYAG | 1 cut(s) | 1062 |
| BfrI | CTTAAG | 1 cut(s) | 814 |
| BfuAI | ACCTGC | 1 cut(s) | 640 |
| BisI | GCNGC | 6 cut(s) | 321, 647, 712, 764, 941, 944 |
| BlsI | GCNGC | 6 cut(s) | 322, 648, 713, 765, 942, 945 |
| BmcAI | AGTACT | 1 cut(s) | 1033 |
| Bme1390I | CCNGG | 3 cut(s) | 779, 894, 935 |
| Bme18I | GGWCC | 1 cut(s) | 411 |
| BmgT120I | GGNCC | 1 cut(s) | 411 |
| BmiI | GGNNCC | 2 cut(s) | 301, 767 |
| BmrFI | CCNGG | 3 cut(s) | 779, 894, 935 |
| BmsI | GCATC | 4 cut(s) | 380, 501, 656, 863 |
| BpiI | GAAGAC | 1 cut(s) | 1094 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1165 |
| BpuEI | CTTGAG | 1 cut(s) | 554 |
| BsaJI | CCNNGG | 1 cut(s) | 934 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 571, 722, 864 |
| Bse1I | ACTGG | 3 cut(s) | 45, 394, 803 |
| BseBI | CCWGG | 3 cut(s) | 779, 894, 935 |
| BseDI | CCNNGG | 1 cut(s) | 934 |
| BseGI | GGATG | 3 cut(s) | 492, 807, 854 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 571, 722, 864 |
| BseMII | CTCAG | 2 cut(s) | 217, 371 |
| BseNI | ACTGG | 3 cut(s) | 45, 394, 803 |
| BseXI | GCAGC | 3 cut(s) | 307, 658, 723 |
| BshFI | GGCC | 2 cut(s) | 917, 1152 |
| BshNI | GGYRCC | 2 cut(s) | 299, 765 |
| BslFI | GGGAC | 1 cut(s) | 440 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 571, 722, 864 |
| BsmFI | GGGAC | 1 cut(s) | 440 |
| BsnI | GGCC | 2 cut(s) | 917, 1152 |
| Bsp143I | GATC | 1 cut(s) | 30 |
| BspACI | CCGC | 5 cut(s) | 228, 763, 940, 943, 1176 |
| BspANI | GGCC | 2 cut(s) | 917, 1152 |
| BspCNI | CTCAG | 2 cut(s) | 216, 372 |
| BspLI | GGNNCC | 2 cut(s) | 301, 767 |
| BspMI | ACCTGC | 1 cut(s) | 640 |
| BspQI | GCTCTTC | 1 cut(s) | 1051 |
| BspT107I | GGYRCC | 2 cut(s) | 299, 765 |
| BspTI | CTTAAG | 1 cut(s) | 814 |
| BsrI | ACTGG | 3 cut(s) | 45, 394, 803 |
| BssECI | CCNNGG | 1 cut(s) | 934 |
| BssMI | GATC | 1 cut(s) | 30 |
| Bst2UI | CCWGG | 3 cut(s) | 779, 894, 935 |
| Bst4CI | ACNGT | 2 cut(s) | 217, 1066 |
| Bst6I | CTCTTC | 4 cut(s) | 3, 624, 1051, 1141 |
| BstAFI | CTTAAG | 1 cut(s) | 814 |
| BstDEI | CTNAG | 4 cut(s) | 203, 235, 380, 1165 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 569 |
| BstF5I | GGATG | 3 cut(s) | 492, 807, 854 |
| BstHHI | GCGC | 1 cut(s) | 854 |
| BstKTI | GATC | 1 cut(s) | 33 |
| BstMBI | GATC | 1 cut(s) | 30 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 118, 390 |
| BstNI | CCWGG | 3 cut(s) | 779, 894, 935 |
| BstNSI | RCATGY | 1 cut(s) | 950 |
| BstSCI | CCNGG | 3 cut(s) | 777, 892, 933 |
| BstSFI | CTRYAG | 1 cut(s) | 1062 |
| BstV1I | GCAGC | 3 cut(s) | 307, 658, 723 |
| BstV2I | GAAGAC | 1 cut(s) | 1094 |
| BsuRI | GGCC | 2 cut(s) | 917, 1152 |
| BtsCI | GGATG | 3 cut(s) | 492, 807, 854 |
| BtsI | GCAGTG | 1 cut(s) | 538 |
| BtsIMutI | CAGTG | 2 cut(s) | 494, 538 |
| BveI | ACCTGC | 1 cut(s) | 640 |
| CfoI | GCGC | 1 cut(s) | 854 |
| Cfr13I | GGNCC | 1 cut(s) | 411 |
| Csp6I | GTAC | 2 cut(s) | 38, 1032 |
| CviAII | CATG | 1 cut(s) | 947 |
| CviQI | GTAC | 2 cut(s) | 38, 1032 |
| DdeI | CTNAG | 4 cut(s) | 203, 235, 380, 1165 |
| DpnI | GATC | 1 cut(s) | 32 |
| DpnII | GATC | 1 cut(s) | 30 |
| Eam1104I | CTCTTC | 4 cut(s) | 3, 624, 1051, 1141 |
| EarI | CTCTTC | 4 cut(s) | 3, 624, 1051, 1141 |
| Eco47I | GGWCC | 1 cut(s) | 411 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 569 |
| EcoRII | CCWGG | 3 cut(s) | 777, 892, 933 |
| FaeI | CATG | 1 cut(s) | 950 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 563, 595, 682, 714 |
| FaqI | GGGAC | 1 cut(s) | 440 |
| FatI | CATG | 1 cut(s) | 946 |
| Fnu4HI | GCNGC | 6 cut(s) | 321, 647, 712, 764, 941, 944 |
| FokI | GGATG | 3 cut(s) | 479, 814, 841 |
| Fsp4HI | GCNGC | 6 cut(s) | 321, 647, 712, 764, 941, 944 |
| FspAI | RTGCGCAY | 1 cut(s) | 853 |
| FspBI | CTAG | 1 cut(s) | 317 |
| FspI | TGCGCA | 1 cut(s) | 853 |
| GlaI | GCGC | 1 cut(s) | 853 |
| GluI | GCNGC | 6 cut(s) | 321, 647, 712, 764, 941, 944 |
| HaeIII | GGCC | 2 cut(s) | 917, 1152 |
| HhaI | GCGC | 1 cut(s) | 854 |
| Hin1II | CATG | 1 cut(s) | 950 |
| Hin6I | GCGC | 1 cut(s) | 852 |
| HinP1I | GCGC | 1 cut(s) | 852 |
| HinfI | GANTC | 6 cut(s) | 11, 355, 484, 614, 885, 930 |
| HphI | GGTGA | 2 cut(s) | 457, 1182 |
| Hpy188I | TCNGA | 5 cut(s) | 206, 665, 884, 1005, 1110 |
| Hpy188III | TCNNGA | 3 cut(s) | 153, 591, 1053 |
| HpyAV | CCTTC | 3 cut(s) | 201, 575, 672 |
| HpyCH4III | ACNGT | 2 cut(s) | 217, 1066 |
| HpyCH4V | TGCA | 4 cut(s) | 190, 307, 492, 669 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 118, 390 |
| HpyF3I | CTNAG | 4 cut(s) | 203, 235, 380, 1165 |
| Hsp92II | CATG | 1 cut(s) | 950 |
| HspAI | GCGC | 1 cut(s) | 852 |
| Kzo9I | GATC | 1 cut(s) | 30 |
| LguI | GCTCTTC | 1 cut(s) | 1051 |
| LmnI | GCTCC | 1 cut(s) | 435 |
| Lsp1109I | GCAGC | 3 cut(s) | 307, 658, 723 |
| LweI | GCATC | 4 cut(s) | 380, 501, 656, 863 |
| MaeI | CTAG | 1 cut(s) | 317 |
| MaeIII | GTNAC | 2 cut(s) | 94, 375 |
| MalI | GATC | 1 cut(s) | 32 |
| MboI | GATC | 1 cut(s) | 30 |
| MboII | GAAGA | 8 cut(s) | 20, 172, 493, 611, 1068, 1094, 1097, 1158 |
| MfeI | CAATTG | 1 cut(s) | 504 |
| MlyI | GAGTC | 2 cut(s) | 20, 879 |
| MmeI | TCCRAC | 3 cut(s) | 907, 966, 1169 |
| MseI | TTAA | 8 cut(s) | 83, 167, 182, 362, 743, 815, 899, 1180 |
| MspCI | CTTAAG | 1 cut(s) | 814 |
| MspR9I | CCNGG | 3 cut(s) | 779, 894, 935 |
| MunI | CAATTG | 1 cut(s) | 504 |
| MvaI | CCWGG | 3 cut(s) | 779, 894, 935 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 118, 390 |
| NdeII | GATC | 1 cut(s) | 30 |
| NlaIII | CATG | 1 cut(s) | 950 |
| NlaIV | GGNNCC | 2 cut(s) | 301, 767 |
| NsbI | TGCGCA | 1 cut(s) | 853 |
| NspI | RCATGY | 1 cut(s) | 950 |
| PciSI | GCTCTTC | 1 cut(s) | 1051 |
| PfeI | GAWTC | 4 cut(s) | 355, 484, 614, 930 |
| PfoI | TCCNGGA | 1 cut(s) | 892 |
| PkrI | GCNGC | 6 cut(s) | 322, 648, 713, 765, 942, 945 |
| PleI | GAGTC | 2 cut(s) | 19, 879 |
| PpsI | GAGTC | 2 cut(s) | 19, 879 |
| Psp6I | CCWGG | 3 cut(s) | 777, 892, 933 |
| PspGI | CCWGG | 3 cut(s) | 777, 892, 933 |
| PspN4I | GGNNCC | 2 cut(s) | 301, 767 |
| PspPI | GGNCC | 1 cut(s) | 411 |
| RsaI | GTAC | 2 cut(s) | 39, 1033 |
| RsaNI | GTAC | 2 cut(s) | 38, 1032 |
| SapI | GCTCTTC | 1 cut(s) | 1051 |
| SaqAI | TTAA | 8 cut(s) | 83, 167, 182, 362, 743, 815, 899, 1180 |
| SatI | GCNGC | 6 cut(s) | 321, 647, 712, 764, 941, 944 |
| Sau3AI | GATC | 1 cut(s) | 30 |
| Sau96I | GGNCC | 1 cut(s) | 411 |
| ScaI | AGTACT | 1 cut(s) | 1033 |
| SchI | GAGTC | 2 cut(s) | 20, 879 |
| ScrFI | CCNGG | 3 cut(s) | 779, 894, 935 |
| SfaNI | GCATC | 4 cut(s) | 380, 501, 656, 863 |
| SfcI | CTRYAG | 1 cut(s) | 1062 |
| SinI | GGWCC | 1 cut(s) | 411 |
| SmlI | CTYRAG | 3 cut(s) | 2, 569, 814 |
| SmoI | CTYRAG | 3 cut(s) | 2, 569, 814 |
| SsiI | CCGC | 5 cut(s) | 228, 763, 940, 943, 1176 |
| SspI | AATATT | 1 cut(s) | 810 |
| SspMI | CTAG | 1 cut(s) | 317 |
| StyD4I | CCNGG | 3 cut(s) | 777, 892, 933 |
| TaaI | ACNGT | 2 cut(s) | 217, 1066 |
| TatI | WGTACW | 1 cut(s) | 1031 |
| TauI | GCSGC | 3 cut(s) | 766, 943, 946 |
| TfiI | GAWTC | 4 cut(s) | 355, 484, 614, 930 |
| Tru1I | TTAA | 8 cut(s) | 83, 167, 182, 362, 743, 815, 899, 1180 |
| Tru9I | TTAA | 8 cut(s) | 83, 167, 182, 362, 743, 815, 899, 1180 |
| TscAI | CASTG | 2 cut(s) | 494, 538 |
| TseI | GCWGC | 3 cut(s) | 320, 646, 711 |
| TspRI | CASTG | 2 cut(s) | 494, 538 |
| Vha464I | CTTAAG | 1 cut(s) | 814 |
| VpaK11BI | GGWCC | 1 cut(s) | 411 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 569 |
| XapI | RAATTY | 3 cut(s) | 820, 965, 1111 |
| XceI | RCATGY | 1 cut(s) | 950 |
| XspI | CTAG | 1 cut(s) | 317 |
| ZrmI | AGTACT | 1 cut(s) | 1033 |