isoform X1
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 296 |
| AclWI | GGATC | 6 cut(s) | 136, 404, 601, 675, 812, 825 |
| AfaI | GTAC | 3 cut(s) | 26, 333, 489 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 827 |
| AflII | CTTAAG | 1 cut(s) | 647 |
| AflIII | ACRYGT | 1 cut(s) | 598 |
| AgsI | TTSAA | 3 cut(s) | 112, 121, 631 |
| AjnI | CCWGG | 1 cut(s) | 154 |
| AleI | CACNNNNGTG | 1 cut(s) | 202 |
| Alw21I | GWGCWC | 1 cut(s) | 496 |
| Alw26I | GTCTC | 2 cut(s) | 35, 649 |
| AlwI | GGATC | 6 cut(s) | 136, 404, 601, 675, 812, 825 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 389 |
| AoxI | GGCC | 2 cut(s) | 370, 380 |
| AspS9I | GGNCC | 1 cut(s) | 356 |
| AsuC2I | CCSGG | 1 cut(s) | 815 |
| AsuHPI | GGTGA | 2 cut(s) | 262, 763 |
| AvaII | GGWCC | 1 cut(s) | 356 |
| BamHI | GGATCC | 1 cut(s) | 817 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 262, 294 |
| Bbv12I | GWGCWC | 1 cut(s) | 496 |
| BccI | CCATC | 2 cut(s) | 347, 751 |
| BciT130I | CCWGG | 1 cut(s) | 156 |
| BcnI | CCSGG | 1 cut(s) | 815 |
| BcoDI | GTCTC | 2 cut(s) | 35, 649 |
| BfaI | CTAG | 2 cut(s) | 267, 393 |
| BfrI | CTTAAG | 1 cut(s) | 647 |
| Bme1390I | CCNGG | 2 cut(s) | 156, 815 |
| Bme18I | GGWCC | 1 cut(s) | 356 |
| BmgT120I | GGNCC | 1 cut(s) | 356 |
| BmiI | GGNNCC | 1 cut(s) | 819 |
| BmrFI | CCNGG | 2 cut(s) | 156, 815 |
| BmsI | GCATC | 1 cut(s) | 783 |
| BpuEI | CTTGAG | 1 cut(s) | 160 |
| BpuMI | CCSGG | 1 cut(s) | 815 |
| BsaAI | YACGTR | 1 cut(s) | 491 |
| BsaJI | CCNNGG | 2 cut(s) | 155, 747 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 827 |
| Bse3DI | GCAATG | 1 cut(s) | 511 |
| BseBI | CCWGG | 1 cut(s) | 156 |
| BseDI | CCNNGG | 2 cut(s) | 155, 747 |
| BseGI | GGATG | 3 cut(s) | 10, 43, 304 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 827 |
| BseMI | GCAATG | 1 cut(s) | 511 |
| BseMII | CTCAG | 2 cut(s) | 351, 787 |
| BshFI | GGCC | 2 cut(s) | 372, 382 |
| BsiHKAI | GWGCWC | 1 cut(s) | 496 |
| BsiSI | CCGG | 1 cut(s) | 815 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 827 |
| BsmAI | GTCTC | 2 cut(s) | 35, 649 |
| BsmI | GAATGC | 2 cut(s) | 70, 679 |
| BsnI | GGCC | 2 cut(s) | 372, 382 |
| Bsp1286I | GDGCHC | 1 cut(s) | 496 |
| Bsp143I | GATC | 6 cut(s) | 128, 396, 593, 667, 817, 836 |
| Bsp19I | CCATGG | 1 cut(s) | 747 |
| BspACI | CCGC | 1 cut(s) | 296 |
| BspANI | GGCC | 2 cut(s) | 372, 382 |
| BspCNI | CTCAG | 2 cut(s) | 352, 786 |
| BspLI | GGNNCC | 1 cut(s) | 819 |
| BspPI | GGATC | 6 cut(s) | 136, 404, 601, 675, 812, 825 |
| BspTI | CTTAAG | 1 cut(s) | 647 |
| BsrDI | GCAATG | 1 cut(s) | 511 |
| BssECI | CCNNGG | 2 cut(s) | 155, 747 |
| BssMI | GATC | 6 cut(s) | 128, 396, 593, 667, 817, 836 |
| BssT1I | CCWWGG | 1 cut(s) | 747 |
| Bst2UI | CCWGG | 1 cut(s) | 156 |
| BstAFI | CTTAAG | 1 cut(s) | 647 |
| BstBAI | YACGTR | 1 cut(s) | 491 |
| BstC8I | GCNNGC | 1 cut(s) | 390 |
| BstDEI | CTNAG | 3 cut(s) | 360, 456, 773 |
| BstDSI | CCRYGG | 1 cut(s) | 747 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 825 |
| BstF5I | GGATG | 3 cut(s) | 10, 43, 304 |
| BstKTI | GATC | 6 cut(s) | 131, 399, 596, 670, 820, 839 |
| BstMAI | GTCTC | 2 cut(s) | 35, 649 |
| BstMBI | GATC | 6 cut(s) | 128, 396, 593, 667, 817, 836 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 452, 719 |
| BstNI | CCWGG | 1 cut(s) | 156 |
| BstNSI | RCATGY | 3 cut(s) | 296, 488, 602 |
| BstSCI | CCNGG | 2 cut(s) | 154, 813 |
| BstX2I | RGATCY | 2 cut(s) | 396, 817 |
| BstYI | RGATCY | 2 cut(s) | 396, 817 |
| BsuRI | GGCC | 2 cut(s) | 372, 382 |
| BtgI | CCRYGG | 1 cut(s) | 747 |
| BtsCI | GGATG | 3 cut(s) | 10, 43, 304 |
| BtsIMutI | CAGTG | 1 cut(s) | 85 |
| Cac8I | GCNNGC | 1 cut(s) | 390 |
| CaiI | CAGNNNCTG | 1 cut(s) | 389 |
| Cfr13I | GGNCC | 1 cut(s) | 356 |
| Csp6I | GTAC | 3 cut(s) | 25, 332, 488 |
| CviAII | CATG | 5 cut(s) | 125, 293, 485, 599, 748 |
| CviJI | RGCY | 5 cut(s) | 372, 382, 388, 585, 652 |
| CviKI_1 | RGCY | 5 cut(s) | 372, 382, 388, 585, 652 |
| CviQI | GTAC | 3 cut(s) | 25, 332, 488 |
| DdeI | CTNAG | 3 cut(s) | 360, 456, 773 |
| DpnI | GATC | 6 cut(s) | 130, 398, 595, 669, 819, 838 |
| DpnII | GATC | 6 cut(s) | 128, 396, 593, 667, 817, 836 |
| Eco130I | CCWWGG | 1 cut(s) | 747 |
| Eco32I | GATATC | 2 cut(s) | 64, 618 |
| Eco47I | GGWCC | 1 cut(s) | 356 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 825 |
| EcoRII | CCWGG | 1 cut(s) | 154 |
| EcoRV | GATATC | 2 cut(s) | 64, 618 |
| EcoT14I | CCWWGG | 1 cut(s) | 747 |
| ErhI | CCWWGG | 1 cut(s) | 747 |
| FaeI | CATG | 5 cut(s) | 128, 296, 488, 602, 751 |
| FatI | CATG | 5 cut(s) | 124, 292, 484, 598, 747 |
| FauNDI | CATATG | 1 cut(s) | 16 |
| FokI | GGATG | 3 cut(s) | 17, 50, 311 |
| FspBI | CTAG | 2 cut(s) | 267, 393 |
| HaeIII | GGCC | 2 cut(s) | 372, 382 |
| HapII | CCGG | 1 cut(s) | 815 |
| Hin1II | CATG | 5 cut(s) | 128, 296, 488, 602, 751 |
| HincII | GTYRAC | 1 cut(s) | 241 |
| HindII | GTYRAC | 1 cut(s) | 241 |
| HinfI | GANTC | 2 cut(s) | 464, 637 |
| HpaII | CCGG | 1 cut(s) | 815 |
| HphI | GGTGA | 2 cut(s) | 262, 763 |
| Hpy166II | GTNNAC | 1 cut(s) | 241 |
| Hpy188I | TCNGA | 4 cut(s) | 339, 469, 498, 613 |
| Hpy188III | TCNNGA | 2 cut(s) | 59, 790 |
| Hpy8I | GTNNAC | 1 cut(s) | 241 |
| HpyAV | CCTTC | 1 cut(s) | 625 |
| HpyCH4IV | ACGT | 1 cut(s) | 490 |
| HpyCH4V | TGCA | 5 cut(s) | 8, 232, 504, 722, 827 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 452, 719 |
| HpyF3I | CTNAG | 3 cut(s) | 360, 456, 773 |
| HpySE526I | ACGT | 1 cut(s) | 490 |
| Hsp92II | CATG | 5 cut(s) | 128, 296, 488, 602, 751 |
| Kzo9I | GATC | 6 cut(s) | 128, 396, 593, 667, 817, 836 |
| LmnI | GCTCC | 1 cut(s) | 571 |
| LweI | GCATC | 1 cut(s) | 783 |
| MaeI | CTAG | 2 cut(s) | 267, 393 |
| MaeII | ACGT | 1 cut(s) | 490 |
| MaeIII | GTNAC | 1 cut(s) | 286 |
| MalI | GATC | 6 cut(s) | 130, 398, 595, 669, 819, 838 |
| MboI | GATC | 6 cut(s) | 128, 396, 593, 667, 817, 836 |
| MboII | GAAGA | 1 cut(s) | 270 |
| MflI | RGATCY | 2 cut(s) | 396, 817 |
| MhlI | GDGCHC | 1 cut(s) | 496 |
| MluCI | AATT | 3 cut(s) | 441, 533, 762 |
| MnlI | CCTC | 7 cut(s) | 15, 88, 135, 201, 413, 561, 728 |
| MseI | TTAA | 4 cut(s) | 225, 510, 648, 675 |
| MslI | CAYNNNNRTG | 6 cut(s) | 32, 202, 248, 297, 489, 752 |
| MspCI | CTTAAG | 1 cut(s) | 647 |
| MspI | CCGG | 1 cut(s) | 815 |
| MspR9I | CCNGG | 2 cut(s) | 156, 815 |
| Mva1269I | GAATGC | 2 cut(s) | 70, 679 |
| MvaI | CCWGG | 1 cut(s) | 156 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 452, 719 |
| NciI | CCSGG | 1 cut(s) | 815 |
| NcoI | CCATGG | 1 cut(s) | 747 |
| NdeI | CATATG | 1 cut(s) | 16 |
| NdeII | GATC | 6 cut(s) | 128, 396, 593, 667, 817, 836 |
| NlaIII | CATG | 5 cut(s) | 128, 296, 488, 602, 751 |
| NlaIV | GGNNCC | 1 cut(s) | 819 |
| NmeAIII | GCCGAG | 1 cut(s) | 678 |
| NmuCI | GTSAC | 1 cut(s) | 286 |
| NspI | RCATGY | 3 cut(s) | 296, 488, 602 |
| OliI | CACNNNNGTG | 1 cut(s) | 202 |
| PciI | ACATGT | 1 cut(s) | 598 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 335 |
| PctI | GAATGC | 2 cut(s) | 70, 679 |
| PfeI | GAWTC | 2 cut(s) | 464, 637 |
| PfoI | TCCNGGA | 1 cut(s) | 813 |
| Ppu21I | YACGTR | 1 cut(s) | 491 |
| PscI | ACATGT | 1 cut(s) | 598 |
| Psp6I | CCWGG | 1 cut(s) | 154 |
| PspGI | CCWGG | 1 cut(s) | 154 |
| PspN4I | GGNNCC | 1 cut(s) | 819 |
| PspPI | GGNCC | 1 cut(s) | 356 |
| PstNI | CAGNNNCTG | 1 cut(s) | 389 |
| PsuI | RGATCY | 2 cut(s) | 396, 817 |
| RsaI | GTAC | 3 cut(s) | 26, 333, 489 |
| RsaNI | GTAC | 3 cut(s) | 25, 332, 488 |
| RseI | CAYNNNNRTG | 6 cut(s) | 32, 202, 248, 297, 489, 752 |
| SaqAI | TTAA | 4 cut(s) | 225, 510, 648, 675 |
| Sau3AI | GATC | 6 cut(s) | 128, 396, 593, 667, 817, 836 |
| Sau96I | GGNCC | 1 cut(s) | 356 |
| ScrFI | CCNGG | 2 cut(s) | 156, 815 |
| SduI | GDGCHC | 1 cut(s) | 496 |
| SfaNI | GCATC | 1 cut(s) | 783 |
| SinI | GGWCC | 1 cut(s) | 356 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 32, 202, 248, 297, 489, 752 |
| SmlI | CTYRAG | 2 cut(s) | 139, 647 |
| SmoI | CTYRAG | 2 cut(s) | 139, 647 |
| Sse9I | AATT | 3 cut(s) | 441, 533, 762 |
| SsiI | CCGC | 1 cut(s) | 296 |
| SspI | AATATT | 1 cut(s) | 473 |
| SspMI | CTAG | 2 cut(s) | 267, 393 |
| StyD4I | CCNGG | 2 cut(s) | 154, 813 |
| StyI | CCWWGG | 1 cut(s) | 747 |
| TaiI | ACGT | 1 cut(s) | 493 |
| TaqI | TCGA | 1 cut(s) | 179 |
| TasI | AATT | 3 cut(s) | 441, 533, 762 |
| TfiI | GAWTC | 2 cut(s) | 464, 637 |
| Tru1I | TTAA | 4 cut(s) | 225, 510, 648, 675 |
| Tru9I | TTAA | 4 cut(s) | 225, 510, 648, 675 |
| TscAI | CASTG | 1 cut(s) | 85 |
| TseFI | GTSAC | 1 cut(s) | 286 |
| Tsp45I | GTSAC | 1 cut(s) | 286 |
| TspDTI | ATGAA | 5 cut(s) | 63, 306, 426, 672, 690 |
| TspRI | CASTG | 1 cut(s) | 85 |
| Vha464I | CTTAAG | 1 cut(s) | 647 |
| VpaK11BI | GGWCC | 1 cut(s) | 356 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 825 |
| XceI | RCATGY | 3 cut(s) | 296, 488, 602 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 754 |
| XspI | CTAG | 2 cut(s) | 267, 393 |