isoform X1
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 373 |
| AccB1I | GGYRCC | 2 cut(s) | 1255, 1299 |
| AciI | CCGC | 1 cut(s) | 1861 |
| AclI | AACGTT | 1 cut(s) | 1468 |
| AclWI | GGATC | 2 cut(s) | 660, 673 |
| AcoI | YGGCCR | 2 cut(s) | 1763, 1906 |
| AcuI | CTGAAG | 2 cut(s) | 128, 375 |
| AfaI | GTAC | 3 cut(s) | 106, 1159, 1718 |
| AjnI | CCWGG | 2 cut(s) | 157, 1558 |
| Alw21I | GWGCWC | 1 cut(s) | 438 |
| Alw26I | GTCTC | 1 cut(s) | 1125 |
| AlwI | GGATC | 2 cut(s) | 660, 673 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 205 |
| Ama87I | CYCGRG | 1 cut(s) | 886 |
| AoxI | GGCC | 4 cut(s) | 1663, 1763, 1835, 1906 |
| ApeKI | GCWGC | 4 cut(s) | 279, 428, 692, 1670 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 484, 516 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 289, 1862 |
| AspS9I | GGNCC | 2 cut(s) | 505, 1473 |
| AsuC2I | CCSGG | 2 cut(s) | 887, 888 |
| AsuHPI | GGTGA | 2 cut(s) | 1457, 1867 |
| AvaI | CYCGRG | 1 cut(s) | 886 |
| AvaII | GGWCC | 2 cut(s) | 505, 1473 |
| BaeGI | GKGCMC | 1 cut(s) | 1928 |
| BamHI | GGATCC | 1 cut(s) | 665 |
| BanI | GGYRCC | 2 cut(s) | 1255, 1299 |
| BanII | GRGCYC | 2 cut(s) | 438, 893 |
| BbsI | GAAGAC | 3 cut(s) | 99, 330, 1779 |
| Bbv12I | GWGCWC | 1 cut(s) | 438 |
| BbvI | GCAGC | 4 cut(s) | 291, 415, 679, 1657 |
| BccI | CCATC | 4 cut(s) | 545, 925, 998, 1435 |
| BceAI | ACGGC | 3 cut(s) | 1287, 1678, 1893 |
| BciT130I | CCWGG | 2 cut(s) | 159, 1560 |
| BclI | TGATCA | 1 cut(s) | 1609 |
| BcnI | CCSGG | 2 cut(s) | 887, 888 |
| BcoDI | GTCTC | 1 cut(s) | 1125 |
| BfaI | CTAG | 5 cut(s) | 21, 219, 1317, 1409, 1554 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1914 |
| BisI | GCNGC | 4 cut(s) | 280, 429, 693, 1671 |
| BlsI | GCNGC | 4 cut(s) | 281, 430, 694, 1672 |
| BmcAI | AGTACT | 1 cut(s) | 1718 |
| Bme1390I | CCNGG | 4 cut(s) | 159, 887, 888, 1560 |
| Bme18I | GGWCC | 2 cut(s) | 505, 1473 |
| BmeT110I | CYCGRG | 1 cut(s) | 886 |
| BmgT120I | GGNCC | 2 cut(s) | 505, 1473 |
| BmiI | GGNNCC | 4 cut(s) | 538, 667, 1257, 1301 |
| BmrFI | CCNGG | 4 cut(s) | 159, 887, 888, 1560 |
| BmsI | GCATC | 5 cut(s) | 192, 331, 820, 1063, 1380 |
| BpiI | GAAGAC | 3 cut(s) | 99, 330, 1779 |
| BpmI | CTGGAG | 1 cut(s) | 1581 |
| Bpu10I | CCTNAGC | 3 cut(s) | 449, 807, 1850 |
| BpuEI | CTTGAG | 1 cut(s) | 1107 |
| BpuMI | CCSGG | 2 cut(s) | 887, 888 |
| BsaJI | CCNNGG | 3 cut(s) | 725, 886, 1558 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 948, 978, 1490, 1520 |
| Bse1I | ACTGG | 5 cut(s) | 115, 989, 1057, 1165, 1394 |
| Bse3DI | GCAATG | 2 cut(s) | 687, 1780 |
| BseBI | CCWGG | 2 cut(s) | 159, 1560 |
| BseDI | CCNNGG | 3 cut(s) | 725, 886, 1558 |
| BseGI | GGATG | 2 cut(s) | 346, 1462 |
| BseMI | GCAATG | 2 cut(s) | 687, 1780 |
| BseMII | CTCAG | 3 cut(s) | 72, 463, 1833 |
| BseNI | ACTGG | 5 cut(s) | 115, 989, 1057, 1165, 1394 |
| BseRI | GAGGAG | 1 cut(s) | 1465 |
| BseSI | GKGCMC | 1 cut(s) | 1928 |
| BseX3I | CGGCCG | 1 cut(s) | 1763 |
| BseXI | GCAGC | 4 cut(s) | 291, 415, 679, 1657 |
| Bsh1285I | CGRYCG | 2 cut(s) | 190, 1766 |
| BshFI | GGCC | 4 cut(s) | 1665, 1765, 1837, 1908 |
| BshNI | GGYRCC | 2 cut(s) | 1255, 1299 |
| BsiEI | CGRYCG | 2 cut(s) | 190, 1766 |
| BsiHKAI | GWGCWC | 1 cut(s) | 438 |
| BsiHKCI | CYCGRG | 1 cut(s) | 886 |
| BsiSI | CCGG | 2 cut(s) | 887, 1762 |
| BsmAI | GTCTC | 1 cut(s) | 1125 |
| BsmI | GAATGC | 1 cut(s) | 344 |
| BsnI | GGCC | 4 cut(s) | 1665, 1765, 1837, 1908 |
| BsoBI | CYCGRG | 1 cut(s) | 886 |
| Bsp1286I | GDGCHC | 3 cut(s) | 438, 893, 1928 |
| Bsp143I | GATC | 5 cut(s) | 187, 665, 1150, 1609, 1638 |
| BspACI | CCGC | 1 cut(s) | 1861 |
| BspANI | GGCC | 4 cut(s) | 1665, 1765, 1837, 1908 |
| BspCNI | CTCAG | 3 cut(s) | 73, 462, 1834 |
| BspLI | GGNNCC | 4 cut(s) | 538, 667, 1257, 1301 |
| BspPI | GGATC | 2 cut(s) | 660, 673 |
| BspQI | GCTCTTC | 1 cut(s) | 898 |
| BspT107I | GGYRCC | 2 cut(s) | 1255, 1299 |
| BsrDI | GCAATG | 2 cut(s) | 687, 1780 |
| BsrI | ACTGG | 5 cut(s) | 115, 989, 1057, 1165, 1394 |
| BssECI | CCNNGG | 3 cut(s) | 725, 886, 1558 |
| BssMI | GATC | 5 cut(s) | 187, 665, 1150, 1609, 1638 |
| BssT1I | CCWWGG | 1 cut(s) | 725 |
| Bst2UI | CCWGG | 2 cut(s) | 159, 1560 |
| Bst4CI | ACNGT | 2 cut(s) | 509, 1751 |
| Bst6I | CTCTTC | 5 cut(s) | 898, 1100, 1123, 1736, 1826 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 524 |
| BstDEI | CTNAG | 6 cut(s) | 81, 125, 449, 807, 1842, 1850 |
| BstF5I | GGATG | 2 cut(s) | 346, 1462 |
| BstKTI | GATC | 5 cut(s) | 190, 668, 1153, 1612, 1641 |
| BstMAI | GTCTC | 1 cut(s) | 1125 |
| BstMBI | GATC | 5 cut(s) | 187, 665, 1150, 1609, 1638 |
| BstMCI | CGRYCG | 2 cut(s) | 190, 1766 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 524, 791, 812, 1390, 1914, 1923 |
| BstNI | CCWGG | 2 cut(s) | 159, 1560 |
| BstSCI | CCNGG | 4 cut(s) | 157, 885, 886, 1558 |
| BstSLI | GKGCMC | 1 cut(s) | 1928 |
| BstV1I | GCAGC | 4 cut(s) | 291, 415, 679, 1657 |
| BstV2I | GAAGAC | 3 cut(s) | 99, 330, 1779 |
| BstX2I | RGATCY | 1 cut(s) | 665 |
| BstYI | RGATCY | 1 cut(s) | 665 |
| BstZI | CGGCCG | 1 cut(s) | 1763 |
| BsuRI | GGCC | 4 cut(s) | 1665, 1765, 1837, 1908 |
| BtsCI | GGATG | 2 cut(s) | 346, 1462 |
| BtsIMutI | CAGTG | 3 cut(s) | 300, 996, 1546 |
| CaiI | CAGNNNCTG | 1 cut(s) | 205 |
| Cfr13I | GGNCC | 2 cut(s) | 505, 1473 |
| Cfr9I | CCCGGG | 1 cut(s) | 886 |
| Csp6I | GTAC | 3 cut(s) | 105, 1158, 1717 |
| CviAII | CATG | 5 cut(s) | 404, 422, 515, 1617, 1623 |
| CviQI | GTAC | 3 cut(s) | 105, 1158, 1717 |
| DdeI | CTNAG | 6 cut(s) | 81, 125, 449, 807, 1842, 1850 |
| DpnI | GATC | 5 cut(s) | 189, 667, 1152, 1611, 1640 |
| DpnII | GATC | 5 cut(s) | 187, 665, 1150, 1609, 1638 |
| DraI | TTTAAA | 1 cut(s) | 258 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 373 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 373 |
| EaeI | YGGCCR | 2 cut(s) | 1763, 1906 |
| EagI | CGGCCG | 1 cut(s) | 1763 |
| Eam1104I | CTCTTC | 5 cut(s) | 898, 1100, 1123, 1736, 1826 |
| EarI | CTCTTC | 5 cut(s) | 898, 1100, 1123, 1736, 1826 |
| Ecl136II | GAGCTC | 1 cut(s) | 436 |
| EclXI | CGGCCG | 1 cut(s) | 1763 |
| Eco130I | CCWWGG | 1 cut(s) | 725 |
| Eco24I | GRGCYC | 2 cut(s) | 438, 893 |
| Eco47I | GGWCC | 2 cut(s) | 505, 1473 |
| Eco52I | CGGCCG | 1 cut(s) | 1763 |
| Eco53kI | GAGCTC | 1 cut(s) | 436 |
| Eco57I | CTGAAG | 2 cut(s) | 128, 375 |
| Eco88I | CYCGRG | 1 cut(s) | 886 |
| EcoICRI | GAGCTC | 1 cut(s) | 436 |
| EcoRII | CCWGG | 2 cut(s) | 157, 1558 |
| EcoT14I | CCWWGG | 1 cut(s) | 725 |
| EcoT22I | ATGCAT | 1 cut(s) | 346 |
| EcoT38I | GRGCYC | 2 cut(s) | 438, 893 |
| ErhI | CCWWGG | 1 cut(s) | 725 |
| FaeI | CATG | 5 cut(s) | 407, 425, 518, 1620, 1626 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 770, 802 |
| FatI | CATG | 5 cut(s) | 403, 421, 514, 1616, 1622 |
| FauNDI | CATATG | 1 cut(s) | 757 |
| FbaI | TGATCA | 1 cut(s) | 1609 |
| Fnu4HI | GCNGC | 4 cut(s) | 280, 429, 693, 1671 |
| FokI | GGATG | 2 cut(s) | 353, 1469 |
| FriOI | GRGCYC | 2 cut(s) | 438, 893 |
| Fsp4HI | GCNGC | 4 cut(s) | 280, 429, 693, 1671 |
| FspBI | CTAG | 5 cut(s) | 21, 219, 1317, 1409, 1554 |
| GluI | GCNGC | 4 cut(s) | 280, 429, 693, 1671 |
| GsuI | CTGGAG | 1 cut(s) | 1581 |
| HaeIII | GGCC | 4 cut(s) | 1665, 1765, 1837, 1908 |
| HapII | CCGG | 2 cut(s) | 887, 1762 |
| Hin1II | CATG | 5 cut(s) | 407, 425, 518, 1620, 1626 |
| HincII | GTYRAC | 2 cut(s) | 913, 1600 |
| HindII | GTYRAC | 2 cut(s) | 913, 1600 |
| HindIII | AAGCTT | 1 cut(s) | 656 |
| HinfI | GANTC | 9 cut(s) | 52, 61, 643, 836, 1039, 1355, 1486, 1796, 1897 |
| HpaII | CCGG | 2 cut(s) | 887, 1762 |
| HphI | GGTGA | 2 cut(s) | 1457, 1867 |
| Hpy166II | GTNNAC | 4 cut(s) | 361, 913, 1567, 1600 |
| Hpy188I | TCNGA | 9 cut(s) | 82, 310, 379, 936, 1038, 1582, 1609, 1690, 1795 |
| Hpy188III | TCNNGA | 9 cut(s) | 191, 199, 244, 349, 451, 490, 679, 1070, 1738 |
| Hpy8I | GTNNAC | 4 cut(s) | 361, 913, 1567, 1600 |
| HpyAV | CCTTC | 3 cut(s) | 962, 1050, 1504 |
| HpyCH4III | ACNGT | 2 cut(s) | 509, 1751 |
| HpyCH4IV | ACGT | 2 cut(s) | 368, 1468 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 524, 791, 812, 1390, 1914, 1923 |
| HpyF3I | CTNAG | 6 cut(s) | 81, 125, 449, 807, 1842, 1850 |
| HpySE526I | ACGT | 2 cut(s) | 368, 1468 |
| Hsp92II | CATG | 5 cut(s) | 407, 425, 518, 1620, 1626 |
| Ksp22I | TGATCA | 1 cut(s) | 1609 |
| Kzo9I | GATC | 5 cut(s) | 187, 665, 1150, 1609, 1638 |
| LguI | GCTCTTC | 1 cut(s) | 898 |
| LmnI | GCTCC | 1 cut(s) | 1435 |
| Lsp1109I | GCAGC | 4 cut(s) | 291, 415, 679, 1657 |
| LweI | GCATC | 5 cut(s) | 192, 331, 820, 1063, 1380 |
| MaeI | CTAG | 5 cut(s) | 21, 219, 1317, 1409, 1554 |
| MaeII | ACGT | 2 cut(s) | 368, 1468 |
| MaeIII | GTNAC | 4 cut(s) | 182, 881, 1214, 1745 |
| MalI | GATC | 5 cut(s) | 189, 667, 1152, 1611, 1640 |
| MboI | GATC | 5 cut(s) | 187, 665, 1150, 1609, 1638 |
| MfeI | CAATTG | 3 cut(s) | 462, 1377, 1642 |
| MflI | RGATCY | 1 cut(s) | 665 |
| MhlI | GDGCHC | 3 cut(s) | 438, 893, 1928 |
| MluCI | AATT | 8 cut(s) | 153, 462, 977, 1078, 1294, 1332, 1377, 1642 |
| MlyI | GAGTC | 3 cut(s) | 637, 830, 1480 |
| MmeI | TCCRAC | 4 cut(s) | 514, 885, 1451, 1855 |
| Mph1103I | ATGCAT | 1 cut(s) | 346 |
| MroXI | GAANNNNTTC | 2 cut(s) | 289, 1862 |
| MseI | TTAA | 3 cut(s) | 257, 1362, 1950 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1621 |
| MspI | CCGG | 2 cut(s) | 887, 1762 |
| MspR9I | CCNGG | 4 cut(s) | 159, 887, 888, 1560 |
| MunI | CAATTG | 3 cut(s) | 462, 1377, 1642 |
| Mva1269I | GAATGC | 1 cut(s) | 344 |
| MvaI | CCWGG | 2 cut(s) | 159, 1560 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 524, 791, 812, 1390, 1914, 1923 |
| NciI | CCSGG | 2 cut(s) | 887, 888 |
| NdeI | CATATG | 1 cut(s) | 757 |
| NdeII | GATC | 5 cut(s) | 187, 665, 1150, 1609, 1638 |
| NlaIII | CATG | 5 cut(s) | 407, 425, 518, 1620, 1626 |
| NlaIV | GGNNCC | 4 cut(s) | 538, 667, 1257, 1301 |
| NmeAIII | GCCGAG | 1 cut(s) | 457 |
| NsiI | ATGCAT | 1 cut(s) | 346 |
| PciSI | GCTCTTC | 1 cut(s) | 898 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 187, 1906 |
| PctI | GAATGC | 1 cut(s) | 344 |
| PdmI | GAANNNNTTC | 2 cut(s) | 289, 1862 |
| PfeI | GAWTC | 6 cut(s) | 52, 61, 1039, 1355, 1796, 1897 |
| PkrI | GCNGC | 4 cut(s) | 281, 430, 694, 1672 |
| Ple19I | CGATCG | 1 cut(s) | 190 |
| PleI | GAGTC | 3 cut(s) | 637, 830, 1480 |
| PpsI | GAGTC | 3 cut(s) | 637, 830, 1480 |
| Psp124BI | GAGCTC | 1 cut(s) | 438 |
| Psp1406I | AACGTT | 1 cut(s) | 1468 |
| Psp6I | CCWGG | 2 cut(s) | 157, 1558 |
| PspGI | CCWGG | 2 cut(s) | 157, 1558 |
| PspN4I | GGNNCC | 4 cut(s) | 538, 667, 1257, 1301 |
| PspPI | GGNCC | 2 cut(s) | 505, 1473 |
| PstNI | CAGNNNCTG | 1 cut(s) | 205 |
| PsuI | RGATCY | 1 cut(s) | 665 |
| PvuI | CGATCG | 1 cut(s) | 190 |
| RsaI | GTAC | 3 cut(s) | 106, 1159, 1718 |
| RsaNI | GTAC | 3 cut(s) | 105, 1158, 1717 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1621 |
| SacI | GAGCTC | 1 cut(s) | 438 |
| SapI | GCTCTTC | 1 cut(s) | 898 |
| SaqAI | TTAA | 3 cut(s) | 257, 1362, 1950 |
| SatI | GCNGC | 4 cut(s) | 280, 429, 693, 1671 |
| Sau3AI | GATC | 5 cut(s) | 187, 665, 1150, 1609, 1638 |
| Sau96I | GGNCC | 2 cut(s) | 505, 1473 |
| ScaI | AGTACT | 1 cut(s) | 1718 |
| SchI | GAGTC | 3 cut(s) | 637, 830, 1480 |
| ScrFI | CCNGG | 4 cut(s) | 159, 887, 888, 1560 |
| SduI | GDGCHC | 3 cut(s) | 438, 893, 1928 |
| SfaNI | GCATC | 5 cut(s) | 192, 331, 820, 1063, 1380 |
| SinI | GGWCC | 2 cut(s) | 505, 1473 |
| SmaI | CCCGGG | 1 cut(s) | 888 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1621 |
| SmlI | CTYRAG | 1 cut(s) | 1122 |
| SmoI | CTYRAG | 1 cut(s) | 1122 |
| Sse9I | AATT | 8 cut(s) | 153, 462, 977, 1078, 1294, 1332, 1377, 1642 |
| SsiI | CCGC | 1 cut(s) | 1861 |
| SspI | AATATT | 3 cut(s) | 111, 265, 616 |
| SspMI | CTAG | 5 cut(s) | 21, 219, 1317, 1409, 1554 |
| SstI | GAGCTC | 1 cut(s) | 438 |
| StyD4I | CCNGG | 4 cut(s) | 157, 885, 886, 1558 |
| StyI | CCWWGG | 1 cut(s) | 725 |
| TaaI | ACNGT | 2 cut(s) | 509, 1751 |
| TaiI | ACGT | 2 cut(s) | 371, 1471 |
| TaqI | TCGA | 3 cut(s) | 243, 828, 1179 |
| TasI | AATT | 8 cut(s) | 153, 462, 977, 1078, 1294, 1332, 1377, 1642 |
| TatI | WGTACW | 1 cut(s) | 1716 |
| TfiI | GAWTC | 6 cut(s) | 52, 61, 1039, 1355, 1796, 1897 |
| Tru1I | TTAA | 3 cut(s) | 257, 1362, 1950 |
| Tru9I | TTAA | 3 cut(s) | 257, 1362, 1950 |
| TscAI | CASTG | 3 cut(s) | 300, 996, 1546 |
| TseI | GCWGC | 4 cut(s) | 279, 428, 692, 1670 |
| TspGWI | ACGGA | 2 cut(s) | 92, 969 |
| TspMI | CCCGGG | 1 cut(s) | 886 |
| TspRI | CASTG | 3 cut(s) | 300, 996, 1546 |
| VpaK11BI | GGWCC | 2 cut(s) | 505, 1473 |
| XmaI | CCCGGG | 1 cut(s) | 886 |
| XmnI | GAANNNNTTC | 2 cut(s) | 289, 1862 |
| XspI | CTAG | 5 cut(s) | 21, 219, 1317, 1409, 1554 |
| ZrmI | AGTACT | 1 cut(s) | 1718 |
| Zsp2I | ATGCAT | 1 cut(s) | 346 |