Protein of unknown function (DUF1223)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PHD | PF00628 | 79 - 120 | 4.1e-09 | PHD-finger |
| Chromo | PF00385 | 731 - 781 | 2.4e-08 | Chromo (CHRromatin Organisation MOdifier) domain |
| ResIII | PF04851 | 824 - 995 | 4.3e-10 | Type III restriction enzyme, res subunit |
| SNF2-rel_dom | PF00176 | 827 - 1116 | 2.9e-79 | SNF2-related domain |
| HDA2-3 | PF11496 | 1064 - 1281 | 1.5e-11 | Class II histone deacetylase complex subunits 2 and 3 |
| Helicase_C | PF00271 | 1140 - 1254 | 1.3e-22 | Helicase conserved C-terminal domain |
| DUF1087 | PF06465 | 1435 - 1476 | 2.4e-06 | CHD subfamily II, DUF1087 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 2165, 2802 |
| AarI | CACCTGC | 2 cut(s) | 1402, 2003 |
| AasI | GACNNNNNNGTC | 3 cut(s) | 4341, 5471, 5821 |
| Acc36I | ACCTGC | 3 cut(s) | 94, 1402, 2003 |
| AccB1I | GGYRCC | 4 cut(s) | 2978, 5219, 6709, 7160 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2362, 5150 |
| AccBSI | CCGCTC | 1 cut(s) | 4510 |
| AccI | GTMKAC | 2 cut(s) | 2923, 5881 |
| AccII | CGCG | 3 cut(s) | 1024, 3604, 4850 |
| AccIII | TCCGGA | 3 cut(s) | 814, 844, 874 |
| AclI | AACGTT | 2 cut(s) | 2360, 5125 |
| AcoI | YGGCCR | 3 cut(s) | 3525, 5859, 6958 |
| AfaI | GTAC | 7 cut(s) | 28, 1679, 2967, 3011, 4063, 4312, 4517 |
| AflII | CTTAAG | 5 cut(s) | 320, 3443, 3905, 4780, 6643 |
| AflIII | ACRYGT | 1 cut(s) | 4848 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 3373, 4849 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 4368, 4400, 5659, 5691 |
| AleI | CACNNNNGTG | 2 cut(s) | 4446, 6645 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1422, 1454, 5622, 5654 |
| Alw21I | GWGCWC | 6 cut(s) | 728, 2355, 3751, 4273, 4537, 6421 |
| Alw26I | GTCTC | 9 cut(s) | 761, 1519, 2021, 2073, 4857, 5688, 6837, 7136, 7171 |
| AlwNI | CAGNNNCTG | 8 cut(s) | 45, 1492, 1955, 2326, 3359, 3581, 6440, 6902 |
| Aor13HI | TCCGGA | 3 cut(s) | 814, 844, 874 |
| AoxI | GGCC | 9 cut(s) | 2685, 2896, 3525, 3658, 5494, 5859, 6532, 6675, 6958 |
| ApaI | GGGCCC | 1 cut(s) | 2689 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 4564, 4596 |
| AseI | ATTAAT | 1 cut(s) | 1376 |
| Asp700I | GAANNNNTTC | 7 cut(s) | 575, 1887, 2835, 3900, 4128, 6370, 6849 |
| AspLEI | GCGC | 5 cut(s) | 1116, 1909, 3604, 3819, 5446 |
| AsuC2I | CCSGG | 3 cut(s) | 6041, 7026, 7190 |
| AsuII | TTCGAA | 1 cut(s) | 564 |
| AvaII | GGWCC | 8 cut(s) | 83, 1306, 2866, 3539, 5018, 6071, 6215, 6881 |
| AxyI | CCTNAGG | 2 cut(s) | 906, 936 |
| BaeGI | GKGCMC | 5 cut(s) | 353, 2689, 4951, 5869, 7163 |
| BalI | TGGCCA | 3 cut(s) | 3527, 5861, 6960 |
| BamHI | GGATCC | 2 cut(s) | 1753, 6556 |
| BanI | GGYRCC | 4 cut(s) | 2978, 5219, 6709, 7160 |
| BanII | GRGCYC | 6 cut(s) | 728, 1995, 2559, 2689, 4494, 4537 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3372, 3404 |
| BbsI | GAAGAC | 6 cut(s) | 114, 146, 2795, 3048, 4710, 6236 |
| Bbv12I | GWGCWC | 6 cut(s) | 728, 2355, 3751, 4273, 4537, 6421 |
| BbvCI | CCTCAGC | 1 cut(s) | 7140 |
| BceAI | ACGGC | 3 cut(s) | 179, 6419, 6584 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 1400, 1434, 3276, 3310, 4801, 4835 |
| BciVI | GTATCC | 1 cut(s) | 5181 |
| BclI | TGATCA | 2 cut(s) | 1771, 4678 |
| BcnI | CCSGG | 3 cut(s) | 6041, 7026, 7190 |
| BcoDI | GTCTC | 9 cut(s) | 761, 1519, 2021, 2073, 4857, 5688, 6837, 7136, 7171 |
| BfmI | CTRYAG | 5 cut(s) | 1409, 1758, 1836, 3378, 6453 |
| BfrI | CTTAAG | 5 cut(s) | 320, 3443, 3905, 4780, 6643 |
| BfuAI | ACCTGC | 3 cut(s) | 94, 1402, 2003 |
| BfuI | GTATCC | 1 cut(s) | 5181 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2662 |
| BglII | AGATCT | 1 cut(s) | 680 |
| BlpI | GCTNAGC | 2 cut(s) | 4554, 7020 |
| Bme18I | GGWCC | 8 cut(s) | 83, 1306, 2866, 3539, 5018, 6071, 6215, 6881 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 3373, 4849 |
| BmrI | ACTGGG | 3 cut(s) | 55, 606, 6300 |
| BmuI | ACTGGG | 3 cut(s) | 55, 606, 6300 |
| BoxI | GACNNNNGTC | 2 cut(s) | 196, 3621 |
| BpiI | GAAGAC | 6 cut(s) | 114, 146, 2795, 3048, 4710, 6236 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 2302, 2334, 3194, 3226 |
| BpmI | CTGGAG | 7 cut(s) | 284, 714, 855, 885, 915, 975, 6702 |
| Bpu10I | CCTNAGC | 2 cut(s) | 966, 7140 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 4554, 7020 |
| Bpu14I | TTCGAA | 1 cut(s) | 564 |
| BpuEI | CTTGAG | 7 cut(s) | 117, 1165, 3533, 4972, 5750, 6901, 7022 |
| BpuMI | CCSGG | 3 cut(s) | 6041, 7026, 7190 |
| Bsa29I | ATCGAT | 2 cut(s) | 2902, 3296 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1776, 4677 |
| BsaI | GGTCTC | 1 cut(s) | 5688 |
| BsaWI | WCCGGW | 3 cut(s) | 814, 844, 874 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 4759, 4789, 6499, 6529 |
| Bse21I | CCTNAGG | 2 cut(s) | 906, 936 |
| Bse3DI | GCAATG | 5 cut(s) | 3243, 5691, 6008, 6624, 6941 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1776, 4677 |
| BseAI | TCCGGA | 3 cut(s) | 814, 844, 874 |
| BseCI | ATCGAT | 2 cut(s) | 2902, 3296 |
| BseJI | GATNNNNATC | 2 cut(s) | 1776, 4677 |
| BseMI | GCAATG | 5 cut(s) | 3243, 5691, 6008, 6624, 6941 |
| BseRI | GAGGAG | 8 cut(s) | 2192, 3080, 4226, 4385, 5025, 5034, 5768, 5771 |
| BseSI | GKGCMC | 5 cut(s) | 353, 2689, 4951, 5869, 7163 |
| BseYI | CCCAGC | 1 cut(s) | 2085 |
| BsgI | GTGCAG | 2 cut(s) | 4422, 6330 |
| Bsh1236I | CGCG | 3 cut(s) | 1024, 3604, 4850 |
| BshFI | GGCC | 9 cut(s) | 2687, 2898, 3527, 3660, 5496, 5861, 6534, 6677, 6960 |
| BshNI | GGYRCC | 4 cut(s) | 2978, 5219, 6709, 7160 |
| BshVI | ATCGAT | 2 cut(s) | 2902, 3296 |
| BsiHKAI | GWGCWC | 6 cut(s) | 728, 2355, 3751, 4273, 4537, 6421 |
| BsiSI | CCGG | 9 cut(s) | 815, 845, 875, 1353, 5177, 6040, 6630, 7025, 7189 |
| BsmAI | GTCTC | 9 cut(s) | 761, 1519, 2021, 2073, 4857, 5688, 6837, 7136, 7171 |
| BsmBI | CGTCTC | 4 cut(s) | 2021, 4857, 7136, 7171 |
| BsmI | GAATGC | 4 cut(s) | 2282, 3433, 4407, 6268 |
| BsnI | GGCC | 9 cut(s) | 2687, 2898, 3527, 3660, 5496, 5861, 6534, 6677, 6960 |
| Bso31I | GGTCTC | 1 cut(s) | 5688 |
| Bsp119I | TTCGAA | 1 cut(s) | 564 |
| Bsp120I | GGGCCC | 1 cut(s) | 2685 |
| Bsp13I | TCCGGA | 3 cut(s) | 814, 844, 874 |
| Bsp1407I | TGTACA | 2 cut(s) | 1677, 3009 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 4554, 7020 |
| Bsp19I | CCATGG | 5 cut(s) | 1234, 1719, 2713, 6108, 6822 |
| BspANI | GGCC | 9 cut(s) | 2687, 2898, 3527, 3660, 5496, 5861, 6534, 6677, 6960 |
| BspDI | ATCGAT | 2 cut(s) | 2902, 3296 |
| BspEI | TCCGGA | 3 cut(s) | 814, 844, 874 |
| BspFNI | CGCG | 3 cut(s) | 1024, 3604, 4850 |
| BspHI | TCATGA | 3 cut(s) | 1867, 3391, 6028 |
| BspMAI | CTGCAG | 3 cut(s) | 1413, 1762, 1840 |
| BspMI | ACCTGC | 3 cut(s) | 94, 1402, 2003 |
| BspQI | GCTCTTC | 4 cut(s) | 1983, 3807, 4218, 6495 |
| BspT104I | TTCGAA | 1 cut(s) | 564 |
| BspT107I | GGYRCC | 4 cut(s) | 2978, 5219, 6709, 7160 |
| BspTI | CTTAAG | 5 cut(s) | 320, 3443, 3905, 4780, 6643 |
| BspTNI | GGTCTC | 1 cut(s) | 5688 |
| BsrBI | CCGCTC | 1 cut(s) | 4510 |
| BsrDI | GCAATG | 5 cut(s) | 3243, 5691, 6008, 6624, 6941 |
| BsrGI | TGTACA | 2 cut(s) | 1677, 3009 |
| BstAFI | CTTAAG | 5 cut(s) | 320, 3443, 3905, 4780, 6643 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 3439, 4436, 4550 |
| BstAUI | TGTACA | 2 cut(s) | 1677, 3009 |
| BstBI | TTCGAA | 1 cut(s) | 564 |
| BstDSI | CCRYGG | 6 cut(s) | 1234, 1719, 2215, 2713, 6108, 6822 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1313 |
| BstFNI | CGCG | 3 cut(s) | 1024, 3604, 4850 |
| BstHHI | GCGC | 5 cut(s) | 1116, 1909, 3604, 3819, 5446 |
| BstMAI | GTCTC | 9 cut(s) | 761, 1519, 2021, 2073, 4857, 5688, 6837, 7136, 7171 |
| BstNSI | RCATGY | 6 cut(s) | 1676, 1913, 2012, 2762, 3400, 5317 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 196, 3621 |
| BstSFI | CTRYAG | 5 cut(s) | 1409, 1758, 1836, 3378, 6453 |
| BstSLI | GKGCMC | 5 cut(s) | 353, 2689, 4951, 5869, 7163 |
| BstUI | CGCG | 3 cut(s) | 1024, 3604, 4850 |
| BstV2I | GAAGAC | 6 cut(s) | 114, 146, 2795, 3048, 4710, 6236 |
| BstX2I | RGATCY | 7 cut(s) | 680, 1163, 1489, 1753, 3566, 6556, 7111 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1750, 6673 |
| BstYI | RGATCY | 7 cut(s) | 680, 1163, 1489, 1753, 3566, 6556, 7111 |
| Bsu15I | ATCGAT | 2 cut(s) | 2902, 3296 |
| Bsu36I | CCTNAGG | 2 cut(s) | 906, 936 |
| BsuI | GTATCC | 1 cut(s) | 5181 |
| BsuRI | GGCC | 9 cut(s) | 2687, 2898, 3527, 3660, 5496, 5861, 6534, 6677, 6960 |
| BsuTUI | ATCGAT | 2 cut(s) | 2902, 3296 |
| BtgI | CCRYGG | 6 cut(s) | 1234, 1719, 2215, 2713, 6108, 6822 |
| BtsI | GCAGTG | 6 cut(s) | 353, 3582, 3999, 4662, 5252, 5867 |
| BveI | ACCTGC | 3 cut(s) | 94, 1402, 2003 |
| CaiI | CAGNNNCTG | 8 cut(s) | 45, 1492, 1955, 2326, 3359, 3581, 6440, 6902 |
| CciI | TCATGA | 3 cut(s) | 1867, 3391, 6028 |
| CfoI | GCGC | 5 cut(s) | 1116, 1909, 3604, 3819, 5446 |
| ClaI | ATCGAT | 2 cut(s) | 2902, 3296 |
| CseI | GACGC | 4 cut(s) | 797, 4839, 6910, 7118 |
| CsiI | ACCWGGT | 1 cut(s) | 6877 |
| Csp6I | GTAC | 7 cut(s) | 27, 1678, 2966, 3010, 4062, 4311, 4516 |
| CviQI | GTAC | 7 cut(s) | 27, 1678, 2966, 3010, 4062, 4311, 4516 |
| DraI | TTTAAA | 7 cut(s) | 390, 1797, 2224, 4107, 5424, 6345, 6765 |
| DrdI | GACNNNNNNGTC | 3 cut(s) | 4341, 5471, 5821 |
| DriI | GACNNNNNGTC | 2 cut(s) | 3373, 4849 |
| DseDI | GACNNNNNNGTC | 3 cut(s) | 4341, 5471, 5821 |
| EaeI | YGGCCR | 3 cut(s) | 3525, 5859, 6958 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 3373, 4849 |
| Ecl136II | GAGCTC | 2 cut(s) | 726, 4535 |
| Eco24I | GRGCYC | 6 cut(s) | 728, 1995, 2559, 2689, 4494, 4537 |
| Eco31I | GGTCTC | 1 cut(s) | 5688 |
| Eco32I | GATATC | 2 cut(s) | 1966, 3508 |
| Eco47I | GGWCC | 8 cut(s) | 83, 1306, 2866, 3539, 5018, 6071, 6215, 6881 |
| Eco53kI | GAGCTC | 2 cut(s) | 726, 4535 |
| Eco81I | CCTNAGG | 2 cut(s) | 906, 936 |
| EcoICRI | GAGCTC | 2 cut(s) | 726, 4535 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1313 |
| EcoO109I | RGGNCCY | 4 cut(s) | 1306, 2686, 2866, 6215 |
| EcoRV | GATATC | 2 cut(s) | 1966, 3508 |
| EcoT22I | ATGCAT | 2 cut(s) | 1018, 5107 |
| EcoT38I | GRGCYC | 6 cut(s) | 728, 1995, 2559, 2689, 4494, 4537 |
| Esp3I | CGTCTC | 4 cut(s) | 2021, 4857, 7136, 7171 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 3888, 3920, 4368, 4400, 5616, 5648 |
| FauI | CCCGC | 4 cut(s) | 2193, 4503, 4531, 5304 |
| FauNDI | CATATG | 5 cut(s) | 2827, 3132, 3550, 4432, 5499 |
| FbaI | TGATCA | 2 cut(s) | 1771, 4678 |
| FblI | GTMKAC | 2 cut(s) | 2923, 5881 |
| FriOI | GRGCYC | 6 cut(s) | 728, 1995, 2559, 2689, 4494, 4537 |
| GlaI | GCGC | 5 cut(s) | 1115, 1908, 3603, 3818, 5445 |
| GsaI | CCCAGC | 1 cut(s) | 2089 |
| GsuI | CTGGAG | 7 cut(s) | 284, 714, 855, 885, 915, 975, 6702 |
| HaeIII | GGCC | 9 cut(s) | 2687, 2898, 3527, 3660, 5496, 5861, 6534, 6677, 6960 |
| HapII | CCGG | 9 cut(s) | 815, 845, 875, 1353, 5177, 6040, 6630, 7025, 7189 |
| HgaI | GACGC | 4 cut(s) | 797, 4839, 6910, 7118 |
| HhaI | GCGC | 5 cut(s) | 1116, 1909, 3604, 3819, 5446 |
| Hin6I | GCGC | 5 cut(s) | 1114, 1907, 3602, 3817, 5444 |
| HinP1I | GCGC | 5 cut(s) | 1114, 1907, 3602, 3817, 5444 |
| HincII | GTYRAC | 3 cut(s) | 21, 3243, 3423 |
| HindII | GTYRAC | 3 cut(s) | 21, 3243, 3423 |
| HindIII | AAGCTT | 4 cut(s) | 71, 2241, 3408, 5768 |
| HpaI | GTTAAC | 1 cut(s) | 3243 |
| HpaII | CCGG | 9 cut(s) | 815, 845, 875, 1353, 5177, 6040, 6630, 7025, 7189 |
| Hpy99I | CGWCG | 2 cut(s) | 165, 6570 |
| HpyCH4IV | ACGT | 4 cut(s) | 2360, 4342, 4579, 5125 |
| HpySE526I | ACGT | 4 cut(s) | 2360, 4342, 4579, 5125 |
| HspAI | GCGC | 5 cut(s) | 1114, 1907, 3602, 3817, 5444 |
| KflI | GGGWCCC | 2 cut(s) | 2866, 6215 |
| Kpn2I | TCCGGA | 3 cut(s) | 814, 844, 874 |
| Ksp22I | TGATCA | 2 cut(s) | 1771, 4678 |
| KspAI | GTTAAC | 1 cut(s) | 3243 |
| LguI | GCTCTTC | 4 cut(s) | 1983, 3807, 4218, 6495 |
| MabI | ACCWGGT | 1 cut(s) | 6877 |
| MaeII | ACGT | 4 cut(s) | 2360, 4342, 4579, 5125 |
| MbiI | CCGCTC | 1 cut(s) | 4510 |
| MfeI | CAATTG | 4 cut(s) | 2497, 3597, 4218, 5674 |
| MflI | RGATCY | 7 cut(s) | 680, 1163, 1489, 1753, 3566, 6556, 7111 |
| MlsI | TGGCCA | 3 cut(s) | 3527, 5861, 6960 |
| MluI | ACGCGT | 1 cut(s) | 4848 |
| MluNI | TGGCCA | 3 cut(s) | 3527, 5861, 6960 |
| MmeI | TCCRAC | 5 cut(s) | 1731, 2980, 5423, 5601, 6041 |
| Mox20I | TGGCCA | 3 cut(s) | 3527, 5861, 6960 |
| Mph1103I | ATGCAT | 2 cut(s) | 1018, 5107 |
| MroI | TCCGGA | 3 cut(s) | 814, 844, 874 |
| MroXI | GAANNNNTTC | 7 cut(s) | 575, 1887, 2835, 3900, 4128, 6370, 6849 |
| MscI | TGGCCA | 3 cut(s) | 3527, 5861, 6960 |
| MslI | CAYNNNNRTG | 9 cut(s) | 2013, 2718, 2763, 2859, 3311, 4446, 5558, 6645, 6671 |
| Msp20I | TGGCCA | 3 cut(s) | 3527, 5861, 6960 |
| MspA1I | CMGCKG | 7 cut(s) | 626, 824, 854, 884, 1481, 2200, 6956 |
| MspCI | CTTAAG | 5 cut(s) | 320, 3443, 3905, 4780, 6643 |
| MspI | CCGG | 9 cut(s) | 815, 845, 875, 1353, 5177, 6040, 6630, 7025, 7189 |
| MunI | CAATTG | 4 cut(s) | 2497, 3597, 4218, 5674 |
| Mva1269I | GAATGC | 4 cut(s) | 2282, 3433, 4407, 6268 |
| MvnI | CGCG | 3 cut(s) | 1024, 3604, 4850 |
| NciI | CCSGG | 3 cut(s) | 6041, 7026, 7190 |
| NcoI | CCATGG | 5 cut(s) | 1234, 1719, 2713, 6108, 6822 |
| NdeI | CATATG | 5 cut(s) | 2827, 3132, 3550, 4432, 5499 |
| NsiI | ATGCAT | 2 cut(s) | 1018, 5107 |
| NspI | RCATGY | 6 cut(s) | 1676, 1913, 2012, 2762, 3400, 5317 |
| NspV | TTCGAA | 1 cut(s) | 564 |
| OliI | CACNNNNGTG | 2 cut(s) | 4446, 6645 |
| PaeI | GCATGC | 2 cut(s) | 2762, 5317 |
| PagI | TCATGA | 3 cut(s) | 1867, 3391, 6028 |
| PaqCI | CACCTGC | 2 cut(s) | 1402, 2003 |
| PasI | CCCWGGG | 1 cut(s) | 1187 |
| PciSI | GCTCTTC | 4 cut(s) | 1983, 3807, 4218, 6495 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 1782, 3751, 4396, 6478 |
| PctI | GAATGC | 4 cut(s) | 2282, 3433, 4407, 6268 |
| PdmI | GAANNNNTTC | 7 cut(s) | 575, 1887, 2835, 3900, 4128, 6370, 6849 |
| PflFI | GACNNNGTC | 2 cut(s) | 3689, 7105 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2362, 5150 |
| PpuMI | RGGWCCY | 3 cut(s) | 1306, 2866, 6215 |
| PshAI | GACNNNNGTC | 2 cut(s) | 196, 3621 |
| PshBI | ATTAAT | 1 cut(s) | 1376 |
| PsiI | TTATAA | 2 cut(s) | 2165, 2802 |
| Psp124BI | GAGCTC | 2 cut(s) | 728, 4537 |
| Psp1406I | AACGTT | 2 cut(s) | 2360, 5125 |
| Psp5II | RGGWCCY | 3 cut(s) | 1306, 2866, 6215 |
| PspFI | CCCAGC | 1 cut(s) | 2085 |
| PspOMI | GGGCCC | 1 cut(s) | 2685 |
| PspPPI | RGGWCCY | 3 cut(s) | 1306, 2866, 6215 |
| PstI | CTGCAG | 3 cut(s) | 1413, 1762, 1840 |
| PstNI | CAGNNNCTG | 8 cut(s) | 45, 1492, 1955, 2326, 3359, 3581, 6440, 6902 |
| PsuI | RGATCY | 7 cut(s) | 680, 1163, 1489, 1753, 3566, 6556, 7111 |
| PsyI | GACNNNGTC | 2 cut(s) | 3689, 7105 |
| PvuII | CAGCTG | 6 cut(s) | 626, 824, 854, 884, 1481, 6956 |
| RsaI | GTAC | 7 cut(s) | 28, 1679, 2967, 3011, 4063, 4312, 4517 |
| RsaNI | GTAC | 7 cut(s) | 27, 1678, 2966, 3010, 4062, 4311, 4516 |
| RseI | CAYNNNNRTG | 9 cut(s) | 2013, 2718, 2763, 2859, 3311, 4446, 5558, 6645, 6671 |
| SacI | GAGCTC | 2 cut(s) | 728, 4537 |
| SapI | GCTCTTC | 4 cut(s) | 1983, 3807, 4218, 6495 |
| SbfI | CCTGCAGG | 2 cut(s) | 1413, 1762 |
| SdaI | CCTGCAGG | 2 cut(s) | 1413, 1762 |
| SexAI | ACCWGGT | 1 cut(s) | 6877 |
| SfcI | CTRYAG | 5 cut(s) | 1409, 1758, 1836, 3378, 6453 |
| SfuI | TTCGAA | 1 cut(s) | 564 |
| SinI | GGWCC | 8 cut(s) | 83, 1306, 2866, 3539, 5018, 6071, 6215, 6881 |
| SmiMI | CAYNNNNRTG | 9 cut(s) | 2013, 2718, 2763, 2859, 3311, 4446, 5558, 6645, 6671 |
| SphI | GCATGC | 2 cut(s) | 2762, 5317 |
| Sse8387I | CCTGCAGG | 2 cut(s) | 1413, 1762 |
| SspI | AATATT | 3 cut(s) | 1846, 3169, 3271 |
| SstI | GAGCTC | 2 cut(s) | 728, 4537 |
| TaiI | ACGT | 4 cut(s) | 2363, 4345, 4582, 5128 |
| TaqII | GACCGA | 3 cut(s) | 3197, 6462, 7095 |
| TatI | WGTACW | 5 cut(s) | 26, 1677, 2965, 3009, 4515 |
| TauI | GCSGC | 2 cut(s) | 1583, 4688 |
| TspGWI | ACGGA | 7 cut(s) | 96, 2204, 4079, 4550, 5020, 5645, 5933 |
| Tth111I | GACNNNGTC | 2 cut(s) | 3689, 7105 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2362, 5150 |
| Vha464I | CTTAAG | 5 cut(s) | 320, 3443, 3905, 4780, 6643 |
| VpaK11BI | GGWCC | 8 cut(s) | 83, 1306, 2866, 3539, 5018, 6071, 6215, 6881 |
| VspI | ATTAAT | 1 cut(s) | 1376 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1313 |
| XceI | RCATGY | 6 cut(s) | 1676, 1913, 2012, 2762, 3400, 5317 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 5488, 6106 |
| XmiI | GTMKAC | 2 cut(s) | 2923, 5881 |
| XmnI | GAANNNNTTC | 7 cut(s) | 575, 1887, 2835, 3900, 4128, 6370, 6849 |
| Zsp2I | ATGCAT | 2 cut(s) | 1018, 5107 |