isoform X1
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 458 |
| AarI | CACCTGC | 1 cut(s) | 587 |
| Acc36I | ACCTGC | 1 cut(s) | 587 |
| AccB1I | GGYRCC | 2 cut(s) | 280, 1875 |
| AccII | CGCG | 1 cut(s) | 519 |
| AciI | CCGC | 7 cut(s) | 448, 815, 971, 1011, 1223, 1468, 1532 |
| AclWI | GGATC | 1 cut(s) | 477 |
| AcoI | YGGCCR | 1 cut(s) | 1855 |
| AcsI | RAATTY | 4 cut(s) | 232, 1021, 1145, 1799 |
| AcyI | GRCGYC | 1 cut(s) | 1876 |
| AfaI | GTAC | 2 cut(s) | 1100, 1897 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 290 |
| AflII | CTTAAG | 2 cut(s) | 1076, 1354 |
| AflIII | ACRYGT | 1 cut(s) | 1892 |
| AjnI | CCWGG | 1 cut(s) | 1031 |
| AluBI | AGCT | 6 cut(s) | 168, 613, 770, 1182, 1674, 1742 |
| AluI | AGCT | 6 cut(s) | 168, 613, 770, 1182, 1674, 1742 |
| Alw21I | GWGCWC | 2 cut(s) | 29, 272 |
| Alw26I | GTCTC | 6 cut(s) | 35, 103, 627, 699, 972, 1490 |
| Alw44I | GTGCAC | 1 cut(s) | 25 |
| AlwI | GGATC | 1 cut(s) | 477 |
| AoxI | GGCC | 3 cut(s) | 1781, 1793, 1855 |
| ApaLI | GTGCAC | 1 cut(s) | 25 |
| ApeKI | GCWGC | 4 cut(s) | 598, 1607, 1739, 1820 |
| ApoI | RAATTY | 4 cut(s) | 232, 1021, 1145, 1799 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1330, 1362, 1402, 1434 |
| AseI | ATTAAT | 1 cut(s) | 1578 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1236 |
| AspLEI | GCGC | 3 cut(s) | 521, 1353, 1878 |
| AspS9I | GGNCC | 2 cut(s) | 1220, 1410 |
| AsuHPI | GGTGA | 5 cut(s) | 262, 547, 1158, 1310, 1877 |
| AsuII | TTCGAA | 1 cut(s) | 1807 |
| AvaII | GGWCC | 2 cut(s) | 1220, 1410 |
| BaeGI | GKGCMC | 1 cut(s) | 29 |
| BanI | GGYRCC | 2 cut(s) | 280, 1875 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 295, 327 |
| Bbv12I | GWGCWC | 2 cut(s) | 29, 272 |
| BbvI | GCAGC | 4 cut(s) | 610, 1594, 1751, 1832 |
| BccI | CCATC | 2 cut(s) | 491, 1792 |
| BceAI | ACGGC | 1 cut(s) | 1237 |
| BciT130I | CCWGG | 1 cut(s) | 1033 |
| BciVI | GTATCC | 1 cut(s) | 836 |
| BclI | TGATCA | 1 cut(s) | 946 |
| BcoDI | GTCTC | 6 cut(s) | 35, 103, 627, 699, 972, 1490 |
| BfaI | CTAG | 5 cut(s) | 413, 762, 1341, 1491, 1743 |
| BfmI | CTRYAG | 1 cut(s) | 1818 |
| BfoI | RGCGCY | 1 cut(s) | 1879 |
| BfrI | CTTAAG | 2 cut(s) | 1076, 1354 |
| BfuAI | ACCTGC | 1 cut(s) | 587 |
| BfuI | GTATCC | 1 cut(s) | 836 |
| BisI | GCNGC | 6 cut(s) | 599, 816, 1469, 1608, 1740, 1821 |
| BlsI | GCNGC | 6 cut(s) | 600, 817, 1470, 1609, 1741, 1822 |
| Bme1390I | CCNGG | 1 cut(s) | 1033 |
| Bme18I | GGWCC | 2 cut(s) | 1220, 1410 |
| BmgT120I | GGNCC | 2 cut(s) | 1220, 1410 |
| BmiI | GGNNCC | 4 cut(s) | 282, 420, 1632, 1877 |
| BmrFI | CCNGG | 1 cut(s) | 1033 |
| BmsI | GCATC | 3 cut(s) | 373, 802, 1726 |
| Bpu14I | TTCGAA | 1 cut(s) | 1807 |
| BpuEI | CTTGAG | 3 cut(s) | 160, 609, 659 |
| BsaAI | YACGTR | 2 cut(s) | 30, 1690 |
| BsaHI | GRCGYC | 1 cut(s) | 1876 |
| BsaI | GGTCTC | 2 cut(s) | 103, 627 |
| BsaJI | CCNNGG | 3 cut(s) | 154, 775, 1032 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 289, 319, 1364, 1394, 1427, 1457 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 290 |
| Bse1I | ACTGG | 1 cut(s) | 865 |
| Bse3DI | GCAATG | 1 cut(s) | 1276 |
| BseBI | CCWGG | 1 cut(s) | 1033 |
| BseDI | CCNNGG | 3 cut(s) | 154, 775, 1032 |
| BseGI | GGATG | 5 cut(s) | 10, 196, 334, 817, 1784 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 290 |
| BseMI | GCAATG | 1 cut(s) | 1276 |
| BseMII | CTCAG | 1 cut(s) | 1374 |
| BseNI | ACTGG | 1 cut(s) | 865 |
| BseRI | GAGGAG | 3 cut(s) | 1041, 1852, 1855 |
| BseSI | GKGCMC | 1 cut(s) | 29 |
| BseXI | GCAGC | 4 cut(s) | 610, 1594, 1751, 1832 |
| Bsh1236I | CGCG | 1 cut(s) | 519 |
| BshFI | GGCC | 3 cut(s) | 1783, 1795, 1857 |
| BshNI | GGYRCC | 2 cut(s) | 280, 1875 |
| BsiHKAI | GWGCWC | 2 cut(s) | 29, 272 |
| BsiSI | CCGG | 1 cut(s) | 1788 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 290 |
| BsmAI | GTCTC | 6 cut(s) | 35, 103, 627, 699, 972, 1490 |
| BsmBI | CGTCTC | 1 cut(s) | 35 |
| BsmI | GAATGC | 2 cut(s) | 706, 792 |
| BsnI | GGCC | 3 cut(s) | 1783, 1795, 1857 |
| Bso31I | GGTCTC | 2 cut(s) | 103, 627 |
| Bsp119I | TTCGAA | 1 cut(s) | 1807 |
| Bsp1286I | GDGCHC | 2 cut(s) | 29, 272 |
| Bsp143I | GATC | 6 cut(s) | 45, 469, 946, 1000, 1244, 1537 |
| Bsp19I | CCATGG | 2 cut(s) | 154, 775 |
| BspACI | CCGC | 7 cut(s) | 448, 815, 971, 1011, 1223, 1468, 1532 |
| BspANI | GGCC | 3 cut(s) | 1783, 1795, 1857 |
| BspCNI | CTCAG | 1 cut(s) | 1375 |
| BspFNI | CGCG | 1 cut(s) | 519 |
| BspHI | TCATGA | 1 cut(s) | 439 |
| BspLI | GGNNCC | 4 cut(s) | 282, 420, 1632, 1877 |
| BspMAI | CTGCAG | 1 cut(s) | 1822 |
| BspMI | ACCTGC | 1 cut(s) | 587 |
| BspPI | GGATC | 1 cut(s) | 477 |
| BspT104I | TTCGAA | 1 cut(s) | 1807 |
| BspT107I | GGYRCC | 2 cut(s) | 280, 1875 |
| BspTI | CTTAAG | 2 cut(s) | 1076, 1354 |
| BspTNI | GGTCTC | 2 cut(s) | 103, 627 |
| BsrDI | GCAATG | 1 cut(s) | 1276 |
| BsrI | ACTGG | 1 cut(s) | 865 |
| BssECI | CCNNGG | 3 cut(s) | 154, 775, 1032 |
| BssMI | GATC | 6 cut(s) | 45, 469, 946, 1000, 1244, 1537 |
| BssNI | GRCGYC | 1 cut(s) | 1876 |
| BssT1I | CCWWGG | 2 cut(s) | 154, 775 |
| Bst2UI | CCWGG | 1 cut(s) | 1033 |
| Bst4CI | ACNGT | 3 cut(s) | 1017, 1501, 1900 |
| Bst6I | CTCTTC | 3 cut(s) | 804, 821, 1227 |
| BstACI | GRCGYC | 1 cut(s) | 1876 |
| BstAFI | CTTAAG | 2 cut(s) | 1076, 1354 |
| BstBAI | YACGTR | 2 cut(s) | 30, 1690 |
| BstBI | TTCGAA | 1 cut(s) | 1807 |
| BstC8I | GCNNGC | 3 cut(s) | 1180, 1399, 1793 |
| BstDEI | CTNAG | 2 cut(s) | 593, 1383 |
| BstDSI | CCRYGG | 2 cut(s) | 154, 775 |
| BstF5I | GGATG | 5 cut(s) | 10, 196, 334, 817, 1784 |
| BstFNI | CGCG | 1 cut(s) | 519 |
| BstH2I | RGCGCY | 1 cut(s) | 1879 |
| BstHHI | GCGC | 3 cut(s) | 521, 1353, 1878 |
| BstKTI | GATC | 6 cut(s) | 48, 472, 949, 1003, 1247, 1540 |
| BstMAI | GTCTC | 6 cut(s) | 35, 103, 627, 699, 972, 1490 |
| BstMBI | GATC | 6 cut(s) | 45, 469, 946, 1000, 1244, 1537 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 767, 1249, 1607 |
| BstNI | CCWGG | 1 cut(s) | 1033 |
| BstNSI | RCATGY | 3 cut(s) | 850, 1401, 1601 |
| BstSCI | CCNGG | 1 cut(s) | 1031 |
| BstSFI | CTRYAG | 1 cut(s) | 1818 |
| BstSLI | GKGCMC | 1 cut(s) | 29 |
| BstUI | CGCG | 1 cut(s) | 519 |
| BstV1I | GCAGC | 4 cut(s) | 610, 1594, 1751, 1832 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1622 |
| BsuI | GTATCC | 1 cut(s) | 836 |
| BsuRI | GGCC | 3 cut(s) | 1783, 1795, 1857 |
| BtgI | CCRYGG | 2 cut(s) | 154, 775 |
| BtsCI | GGATG | 5 cut(s) | 10, 196, 334, 817, 1784 |
| BtsIMutI | CAGTG | 2 cut(s) | 366, 1533 |
| BveI | ACCTGC | 1 cut(s) | 587 |
| Cac8I | GCNNGC | 3 cut(s) | 1180, 1399, 1793 |
| CciI | TCATGA | 1 cut(s) | 439 |
| CfoI | GCGC | 3 cut(s) | 521, 1353, 1878 |
| Cfr13I | GGNCC | 2 cut(s) | 1220, 1410 |
| Csp6I | GTAC | 2 cut(s) | 1099, 1896 |
| CviQI | GTAC | 2 cut(s) | 1099, 1896 |
| DdeI | CTNAG | 2 cut(s) | 593, 1383 |
| DinI | GGCGCC | 1 cut(s) | 1877 |
| DpnI | GATC | 6 cut(s) | 47, 471, 948, 1002, 1246, 1539 |
| DpnII | GATC | 6 cut(s) | 45, 469, 946, 1000, 1244, 1537 |
| DraI | TTTAAA | 1 cut(s) | 226 |
| EaeI | YGGCCR | 1 cut(s) | 1855 |
| Eam1104I | CTCTTC | 3 cut(s) | 804, 821, 1227 |
| EarI | CTCTTC | 3 cut(s) | 804, 821, 1227 |
| EciI | GGCGGA | 1 cut(s) | 1212 |
| Eco130I | CCWWGG | 2 cut(s) | 154, 775 |
| Eco31I | GGTCTC | 2 cut(s) | 103, 627 |
| Eco47I | GGWCC | 2 cut(s) | 1220, 1410 |
| EcoRI | GAATTC | 2 cut(s) | 232, 1021 |
| EcoRII | CCWGG | 1 cut(s) | 1031 |
| EcoT14I | CCWWGG | 2 cut(s) | 154, 775 |
| EcoT22I | ATGCAT | 1 cut(s) | 794 |
| EgeI | GGCGCC | 1 cut(s) | 1877 |
| EheI | GGCGCC | 1 cut(s) | 1877 |
| ErhI | CCWWGG | 2 cut(s) | 154, 775 |
| Esp3I | CGTCTC | 1 cut(s) | 35 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 576, 608 |
| FauI | CCCGC | 1 cut(s) | 441 |
| FbaI | TGATCA | 1 cut(s) | 946 |
| Fnu4HI | GCNGC | 6 cut(s) | 599, 816, 1469, 1608, 1740, 1821 |
| FokI | GGATG | 5 cut(s) | 17, 203, 341, 824, 1771 |
| Fsp4HI | GCNGC | 6 cut(s) | 599, 816, 1469, 1608, 1740, 1821 |
| FspBI | CTAG | 5 cut(s) | 413, 762, 1341, 1491, 1743 |
| GlaI | GCGC | 3 cut(s) | 520, 1352, 1877 |
| GluI | GCNGC | 6 cut(s) | 599, 816, 1469, 1608, 1740, 1821 |
| HaeII | RGCGCY | 1 cut(s) | 1879 |
| HaeIII | GGCC | 3 cut(s) | 1783, 1795, 1857 |
| HapII | CCGG | 1 cut(s) | 1788 |
| HhaI | GCGC | 3 cut(s) | 521, 1353, 1878 |
| Hin1I | GRCGYC | 1 cut(s) | 1876 |
| Hin6I | GCGC | 3 cut(s) | 519, 1351, 1876 |
| HinP1I | GCGC | 3 cut(s) | 519, 1351, 1876 |
| HincII | GTYRAC | 1 cut(s) | 1129 |
| HindII | GTYRAC | 1 cut(s) | 1129 |
| HindIII | AAGCTT | 1 cut(s) | 611 |
| HinfI | GANTC | 5 cut(s) | 121, 257, 911, 1046, 1682 |
| HpaII | CCGG | 1 cut(s) | 1788 |
| HphI | GGTGA | 5 cut(s) | 262, 547, 1158, 1310, 1877 |
| Hpy166II | GTNNAC | 7 cut(s) | 27, 574, 1099, 1129, 1410, 1595, 1896 |
| Hpy188I | TCNGA | 5 cut(s) | 496, 640, 916, 1384, 1910 |
| Hpy188III | TCNNGA | 4 cut(s) | 59, 440, 1043, 1113 |
| Hpy8I | GTNNAC | 7 cut(s) | 27, 574, 1099, 1129, 1410, 1595, 1896 |
| HpyAV | CCTTC | 5 cut(s) | 476, 745, 1208, 1384, 1820 |
| HpyCH4III | ACNGT | 3 cut(s) | 1017, 1501, 1900 |
| HpyCH4IV | ACGT | 4 cut(s) | 29, 74, 1689, 1892 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 767, 1249, 1607 |
| HpyF3I | CTNAG | 2 cut(s) | 593, 1383 |
| HpySE526I | ACGT | 4 cut(s) | 29, 74, 1689, 1892 |
| Hsp92I | GRCGYC | 1 cut(s) | 1876 |
| HspAI | GCGC | 3 cut(s) | 519, 1351, 1876 |
| KasI | GGCGCC | 1 cut(s) | 1875 |
| Ksp22I | TGATCA | 1 cut(s) | 946 |
| Kzo9I | GATC | 6 cut(s) | 45, 469, 946, 1000, 1244, 1537 |
| LmnI | GCTCC | 2 cut(s) | 267, 424 |
| Lsp1109I | GCAGC | 4 cut(s) | 610, 1594, 1751, 1832 |
| LweI | GCATC | 3 cut(s) | 373, 802, 1726 |
| MaeI | CTAG | 5 cut(s) | 413, 762, 1341, 1491, 1743 |
| MaeII | ACGT | 4 cut(s) | 29, 74, 1689, 1892 |
| MaeIII | GTNAC | 2 cut(s) | 994, 1643 |
| MalI | GATC | 6 cut(s) | 47, 471, 948, 1002, 1246, 1539 |
| MboI | GATC | 6 cut(s) | 45, 469, 946, 1000, 1244, 1537 |
| MboII | GAAGA | 9 cut(s) | 339, 538, 791, 838, 877, 1219, 1244, 1459, 1745 |
| MfeI | CAATTG | 1 cut(s) | 1333 |
| MhlI | GDGCHC | 2 cut(s) | 29, 272 |
| Mly113I | GGCGCC | 1 cut(s) | 1876 |
| MmeI | TCCRAC | 2 cut(s) | 1236, 1603 |
| Mph1103I | ATGCAT | 1 cut(s) | 794 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1236 |
| MslI | CAYNNNNRTG | 3 cut(s) | 32, 278, 1588 |
| MspA1I | CMGCKG | 1 cut(s) | 1011 |
| MspCI | CTTAAG | 2 cut(s) | 1076, 1354 |
| MspI | CCGG | 1 cut(s) | 1788 |
| MspR9I | CCNGG | 1 cut(s) | 1033 |
| MunI | CAATTG | 1 cut(s) | 1333 |
| Mva1269I | GAATGC | 2 cut(s) | 706, 792 |
| MvaI | CCWGG | 1 cut(s) | 1033 |
| MvnI | CGCG | 1 cut(s) | 519 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 767, 1249, 1607 |
| NarI | GGCGCC | 1 cut(s) | 1876 |
| NcoI | CCATGG | 2 cut(s) | 154, 775 |
| NdeII | GATC | 6 cut(s) | 45, 469, 946, 1000, 1244, 1537 |
| NlaIV | GGNNCC | 4 cut(s) | 282, 420, 1632, 1877 |
| NsiI | ATGCAT | 1 cut(s) | 794 |
| NspI | RCATGY | 3 cut(s) | 850, 1401, 1601 |
| NspV | TTCGAA | 1 cut(s) | 1807 |
| PaeI | GCATGC | 1 cut(s) | 1401 |
| PagI | TCATGA | 1 cut(s) | 439 |
| PaqCI | CACCTGC | 1 cut(s) | 587 |
| PctI | GAATGC | 2 cut(s) | 706, 792 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1236 |
| PfeI | GAWTC | 5 cut(s) | 121, 257, 911, 1046, 1682 |
| PkrI | GCNGC | 6 cut(s) | 600, 817, 1470, 1609, 1741, 1822 |
| PluTI | GGCGCC | 1 cut(s) | 1879 |
| Ppu21I | YACGTR | 2 cut(s) | 30, 1690 |
| PshBI | ATTAAT | 1 cut(s) | 1578 |
| PsiI | TTATAA | 1 cut(s) | 458 |
| Psp6I | CCWGG | 1 cut(s) | 1031 |
| PspGI | CCWGG | 1 cut(s) | 1031 |
| PspN4I | GGNNCC | 4 cut(s) | 282, 420, 1632, 1877 |
| PspPI | GGNCC | 2 cut(s) | 1220, 1410 |
| PstI | CTGCAG | 1 cut(s) | 1822 |
| RsaI | GTAC | 2 cut(s) | 1100, 1897 |
| RsaNI | GTAC | 2 cut(s) | 1099, 1896 |
| RseI | CAYNNNNRTG | 3 cut(s) | 32, 278, 1588 |
| SatI | GCNGC | 6 cut(s) | 599, 816, 1469, 1608, 1740, 1821 |
| Sau3AI | GATC | 6 cut(s) | 45, 469, 946, 1000, 1244, 1537 |
| Sau96I | GGNCC | 2 cut(s) | 1220, 1410 |
| ScrFI | CCNGG | 1 cut(s) | 1033 |
| SduI | GDGCHC | 2 cut(s) | 29, 272 |
| SfaNI | GCATC | 3 cut(s) | 373, 802, 1726 |
| SfcI | CTRYAG | 1 cut(s) | 1818 |
| SfoI | GGCGCC | 1 cut(s) | 1877 |
| SfuI | TTCGAA | 1 cut(s) | 1807 |
| SinI | GGWCC | 2 cut(s) | 1220, 1410 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 32, 278, 1588 |
| SmlI | CTYRAG | 5 cut(s) | 139, 624, 674, 1076, 1354 |
| SmoI | CTYRAG | 5 cut(s) | 139, 624, 674, 1076, 1354 |
| SphI | GCATGC | 1 cut(s) | 1401 |
| SsiI | CCGC | 7 cut(s) | 448, 815, 971, 1011, 1223, 1468, 1532 |
| SspDI | GGCGCC | 1 cut(s) | 1875 |
| SspI | AATATT | 1 cut(s) | 376 |
| SspMI | CTAG | 5 cut(s) | 413, 762, 1341, 1491, 1743 |
| StyD4I | CCNGG | 1 cut(s) | 1031 |
| StyI | CCWWGG | 2 cut(s) | 154, 775 |
| TaaI | ACNGT | 3 cut(s) | 1017, 1501, 1900 |
| TaiI | ACGT | 4 cut(s) | 32, 77, 1692, 1895 |
| TaqI | TCGA | 2 cut(s) | 1003, 1807 |
| TatI | WGTACW | 1 cut(s) | 1895 |
| TauI | GCSGC | 2 cut(s) | 818, 1471 |
| TfiI | GAWTC | 5 cut(s) | 121, 257, 911, 1046, 1682 |
| TscAI | CASTG | 2 cut(s) | 366, 1533 |
| TseI | GCWGC | 4 cut(s) | 598, 1607, 1739, 1820 |
| TspRI | CASTG | 2 cut(s) | 366, 1533 |
| Vha464I | CTTAAG | 2 cut(s) | 1076, 1354 |
| VneI | GTGCAC | 1 cut(s) | 25 |
| VpaK11BI | GGWCC | 2 cut(s) | 1220, 1410 |
| VspI | ATTAAT | 1 cut(s) | 1578 |
| XapI | RAATTY | 4 cut(s) | 232, 1021, 1145, 1799 |
| XceI | RCATGY | 3 cut(s) | 850, 1401, 1601 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1236 |
| XspI | CTAG | 5 cut(s) | 413, 762, 1341, 1491, 1743 |
| Zsp2I | ATGCAT | 1 cut(s) | 794 |