isoform X1
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PADRE | PF14009 | 33 - 124 | 5.8e-21 | PADRE domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 100 |
| AccB1I | GGYRCC | 1 cut(s) | 292 |
| AccII | CGCG | 1 cut(s) | 239 |
| AciI | CCGC | 2 cut(s) | 301, 317 |
| AclWI | GGATC | 2 cut(s) | 116, 182 |
| AcsI | RAATTY | 1 cut(s) | 279 |
| AcvI | CACGTG | 2 cut(s) | 234, 247 |
| AcyI | GRCGYC | 2 cut(s) | 6, 97 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 168, 169 |
| AgsI | TTSAA | 2 cut(s) | 151, 269 |
| AjiI | CACGTC | 1 cut(s) | 124 |
| AjnI | CCWGG | 2 cut(s) | 167, 303 |
| AluBI | AGCT | 3 cut(s) | 34, 81, 265 |
| AluI | AGCT | 3 cut(s) | 34, 81, 265 |
| Alw26I | GTCTC | 1 cut(s) | 24 |
| AlwI | GGATC | 2 cut(s) | 116, 182 |
| AoxI | GGCC | 2 cut(s) | 306, 354 |
| ApoI | RAATTY | 1 cut(s) | 279 |
| AspLEI | GCGC | 3 cut(s) | 14, 239, 241 |
| AspS9I | GGNCC | 1 cut(s) | 307 |
| AsuC2I | CCSGG | 1 cut(s) | 273 |
| AsuHPI | GGTGA | 1 cut(s) | 143 |
| BaeGI | GKGCMC | 1 cut(s) | 252 |
| BanI | GGYRCC | 1 cut(s) | 292 |
| BbrPI | CACGTG | 2 cut(s) | 234, 247 |
| BccI | CCATC | 1 cut(s) | 35 |
| BciT130I | CCWGG | 2 cut(s) | 169, 305 |
| BciVI | GTATCC | 1 cut(s) | 198 |
| BcnI | CCSGG | 1 cut(s) | 273 |
| BcoDI | GTCTC | 1 cut(s) | 24 |
| BfuI | GTATCC | 1 cut(s) | 198 |
| Bme1390I | CCNGG | 3 cut(s) | 169, 273, 305 |
| BmgBI | CACGTC | 1 cut(s) | 124 |
| BmgT120I | GGNCC | 1 cut(s) | 307 |
| BmiI | GGNNCC | 1 cut(s) | 294 |
| BmrFI | CCNGG | 3 cut(s) | 169, 273, 305 |
| BpuEI | CTTGAG | 1 cut(s) | 20 |
| BpuMI | CCSGG | 1 cut(s) | 273 |
| BsaAI | YACGTR | 2 cut(s) | 234, 247 |
| BsaHI | GRCGYC | 2 cut(s) | 6, 97 |
| BsaJI | CCNNGG | 1 cut(s) | 168 |
| BsaWI | WCCGGW | 1 cut(s) | 328 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 168, 169 |
| Bse1I | ACTGG | 2 cut(s) | 357, 372 |
| BseBI | CCWGG | 2 cut(s) | 169, 305 |
| BseDI | CCNNGG | 1 cut(s) | 168 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 168, 169 |
| BseNI | ACTGG | 2 cut(s) | 357, 372 |
| BsePI | GCGCGC | 1 cut(s) | 237 |
| BseRI | GAGGAG | 1 cut(s) | 275 |
| BseSI | GKGCMC | 1 cut(s) | 252 |
| BsgI | GTGCAG | 1 cut(s) | 348 |
| Bsh1236I | CGCG | 1 cut(s) | 239 |
| BshFI | GGCC | 2 cut(s) | 308, 356 |
| BshNI | GGYRCC | 1 cut(s) | 292 |
| BsiSI | CCGG | 2 cut(s) | 272, 329 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 168, 169 |
| BsmAI | GTCTC | 1 cut(s) | 24 |
| BsmBI | CGTCTC | 1 cut(s) | 24 |
| BsnI | GGCC | 2 cut(s) | 308, 356 |
| Bsp1286I | GDGCHC | 1 cut(s) | 252 |
| Bsp143I | GATC | 4 cut(s) | 108, 117, 133, 174 |
| BspACI | CCGC | 2 cut(s) | 301, 317 |
| BspANI | GGCC | 2 cut(s) | 308, 356 |
| BspFNI | CGCG | 1 cut(s) | 239 |
| BspLI | GGNNCC | 1 cut(s) | 294 |
| BspPI | GGATC | 2 cut(s) | 116, 182 |
| BspT107I | GGYRCC | 1 cut(s) | 292 |
| BsrI | ACTGG | 2 cut(s) | 357, 372 |
| BssECI | CCNNGG | 1 cut(s) | 168 |
| BssHII | GCGCGC | 1 cut(s) | 237 |
| BssMI | GATC | 4 cut(s) | 108, 117, 133, 174 |
| BssNI | GRCGYC | 2 cut(s) | 6, 97 |
| Bst2UI | CCWGG | 2 cut(s) | 169, 305 |
| Bst4CI | ACNGT | 1 cut(s) | 131 |
| BstACI | GRCGYC | 2 cut(s) | 6, 97 |
| BstBAI | YACGTR | 2 cut(s) | 234, 247 |
| BstC8I | GCNNGC | 1 cut(s) | 239 |
| BstFNI | CGCG | 1 cut(s) | 239 |
| BstHHI | GCGC | 3 cut(s) | 14, 239, 241 |
| BstKTI | GATC | 4 cut(s) | 111, 120, 136, 177 |
| BstMAI | GTCTC | 1 cut(s) | 24 |
| BstMBI | GATC | 4 cut(s) | 108, 117, 133, 174 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 247, 353, 362 |
| BstNI | CCWGG | 2 cut(s) | 169, 305 |
| BstSCI | CCNGG | 3 cut(s) | 167, 271, 303 |
| BstSLI | GKGCMC | 1 cut(s) | 252 |
| BstUI | CGCG | 1 cut(s) | 239 |
| BsuI | GTATCC | 1 cut(s) | 198 |
| BsuRI | GGCC | 2 cut(s) | 308, 356 |
| BtrI | CACGTC | 1 cut(s) | 124 |
| BtsIMutI | CAGTG | 1 cut(s) | 365 |
| Cac8I | GCNNGC | 1 cut(s) | 239 |
| CfoI | GCGC | 3 cut(s) | 14, 239, 241 |
| Cfr13I | GGNCC | 1 cut(s) | 307 |
| CviAII | CATG | 2 cut(s) | 197, 220 |
| CviJI | RGCY | 7 cut(s) | 34, 81, 167, 218, 265, 308, 356 |
| CviKI_1 | RGCY | 7 cut(s) | 34, 81, 167, 218, 265, 308, 356 |
| DpnI | GATC | 4 cut(s) | 110, 119, 135, 176 |
| DpnII | GATC | 4 cut(s) | 108, 117, 133, 174 |
| EciI | GGCGGA | 1 cut(s) | 290 |
| Eco72I | CACGTG | 2 cut(s) | 234, 247 |
| EcoRII | CCWGG | 2 cut(s) | 167, 303 |
| Esp3I | CGTCTC | 1 cut(s) | 24 |
| FaeI | CATG | 2 cut(s) | 200, 223 |
| FaiI | YATR | 3 cut(s) | 198, 221, 312 |
| FatI | CATG | 2 cut(s) | 196, 219 |
| GlaI | GCGC | 3 cut(s) | 13, 238, 240 |
| HaeIII | GGCC | 2 cut(s) | 308, 356 |
| HapII | CCGG | 2 cut(s) | 272, 329 |
| HhaI | GCGC | 3 cut(s) | 14, 239, 241 |
| Hin1I | GRCGYC | 2 cut(s) | 6, 97 |
| Hin1II | CATG | 2 cut(s) | 200, 223 |
| Hin6I | GCGC | 3 cut(s) | 12, 237, 239 |
| HinP1I | GCGC | 3 cut(s) | 12, 237, 239 |
| HpaII | CCGG | 2 cut(s) | 272, 329 |
| HphI | GGTGA | 1 cut(s) | 143 |
| Hpy166II | GTNNAC | 1 cut(s) | 127 |
| Hpy188I | TCNGA | 3 cut(s) | 85, 95, 214 |
| Hpy188III | TCNNGA | 2 cut(s) | 37, 115 |
| Hpy8I | GTNNAC | 1 cut(s) | 127 |
| Hpy99I | CGWCG | 5 cut(s) | 116, 125, 230, 257, 260 |
| HpyAV | CCTTC | 1 cut(s) | 65 |
| HpyCH4III | ACNGT | 1 cut(s) | 131 |
| HpyCH4IV | ACGT | 4 cut(s) | 97, 123, 233, 246 |
| HpyCH4V | TGCA | 3 cut(s) | 142, 207, 365 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 247, 353, 362 |
| HpySE526I | ACGT | 4 cut(s) | 97, 123, 233, 246 |
| Hsp92I | GRCGYC | 2 cut(s) | 6, 97 |
| Hsp92II | CATG | 2 cut(s) | 200, 223 |
| HspAI | GCGC | 3 cut(s) | 12, 237, 239 |
| Kzo9I | GATC | 4 cut(s) | 108, 117, 133, 174 |
| LmnI | GCTCC | 1 cut(s) | 262 |
| LpnPI | CCDG | 9 cut(s) | 154, 181, 275, 285, 290, 317, 342, 353, 370 |
| MaeII | ACGT | 4 cut(s) | 97, 123, 233, 246 |
| MalI | GATC | 4 cut(s) | 110, 119, 135, 176 |
| MboI | GATC | 4 cut(s) | 108, 117, 133, 174 |
| MhlI | GDGCHC | 1 cut(s) | 252 |
| MluCI | AATT | 1 cut(s) | 279 |
| MmeI | TCCRAC | 1 cut(s) | 47 |
| MnlI | CCTC | 3 cut(s) | 41, 252, 253 |
| MspI | CCGG | 2 cut(s) | 272, 329 |
| MspR9I | CCNGG | 3 cut(s) | 169, 273, 305 |
| MvaI | CCWGG | 2 cut(s) | 169, 305 |
| MvnI | CGCG | 1 cut(s) | 239 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 247, 353, 362 |
| NciI | CCSGG | 1 cut(s) | 273 |
| NdeII | GATC | 4 cut(s) | 108, 117, 133, 174 |
| NlaIII | CATG | 2 cut(s) | 200, 223 |
| NlaIV | GGNNCC | 1 cut(s) | 294 |
| PauI | GCGCGC | 1 cut(s) | 237 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 117, 120, 252 |
| PmaCI | CACGTG | 2 cut(s) | 234, 247 |
| PmlI | CACGTG | 2 cut(s) | 234, 247 |
| Ppu21I | YACGTR | 2 cut(s) | 234, 247 |
| Psp6I | CCWGG | 2 cut(s) | 167, 303 |
| PspCI | CACGTG | 2 cut(s) | 234, 247 |
| PspGI | CCWGG | 2 cut(s) | 167, 303 |
| PspN4I | GGNNCC | 1 cut(s) | 294 |
| PspPI | GGNCC | 1 cut(s) | 307 |
| PteI | GCGCGC | 1 cut(s) | 237 |
| Sau3AI | GATC | 4 cut(s) | 108, 117, 133, 174 |
| Sau96I | GGNCC | 1 cut(s) | 307 |
| ScrFI | CCNGG | 3 cut(s) | 169, 273, 305 |
| SduI | GDGCHC | 1 cut(s) | 252 |
| SetI | ASST | 7 cut(s) | 36, 83, 100, 126, 236, 249, 267 |
| SmlI | CTYRAG | 1 cut(s) | 35 |
| SmoI | CTYRAG | 1 cut(s) | 35 |
| Sse9I | AATT | 1 cut(s) | 279 |
| SsiI | CCGC | 2 cut(s) | 301, 317 |
| StyD4I | CCNGG | 3 cut(s) | 167, 271, 303 |
| TaaI | ACNGT | 1 cut(s) | 131 |
| TaiI | ACGT | 4 cut(s) | 100, 126, 236, 249 |
| TaqI | TCGA | 1 cut(s) | 120 |
| TasI | AATT | 1 cut(s) | 279 |
| TscAI | CASTG | 1 cut(s) | 372 |
| TspGWI | ACGGA | 1 cut(s) | 214 |
| TspRI | CASTG | 1 cut(s) | 372 |
| XapI | RAATTY | 1 cut(s) | 279 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 364 |
| ZraI | GACGTC | 1 cut(s) | 98 |