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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 10 |
| AatII | GACGTC | 1 cut(s) | 351 |
| AccB1I | GGYRCC | 1 cut(s) | 214 |
| AccII | CGCG | 1 cut(s) | 256 |
| AciI | CCGC | 4 cut(s) | 31, 128, 235, 378 |
| AcoI | YGGCCR | 1 cut(s) | 58 |
| AcyI | GRCGYC | 3 cut(s) | 150, 215, 348 |
| AgsI | TTSAA | 1 cut(s) | 335 |
| AjnI | CCWGG | 2 cut(s) | 308, 339 |
| AleI | CACNNNNGTG | 1 cut(s) | 283 |
| AluBI | AGCT | 2 cut(s) | 139, 263 |
| AluI | AGCT | 2 cut(s) | 139, 263 |
| Alw26I | GTCTC | 4 cut(s) | 41, 48, 148, 183 |
| AoxI | GGCC | 3 cut(s) | 58, 306, 355 |
| AspLEI | GCGC | 3 cut(s) | 217, 256, 258 |
| AsuHPI | GGTGA | 1 cut(s) | 335 |
| BanI | GGYRCC | 1 cut(s) | 214 |
| BanII | GRGCYC | 1 cut(s) | 123 |
| BccI | CCATC | 2 cut(s) | 33, 314 |
| BceAI | ACGGC | 4 cut(s) | 45, 73, 222, 296 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 279, 313 |
| BciT130I | CCWGG | 2 cut(s) | 310, 341 |
| BciVI | GTATCC | 1 cut(s) | 257 |
| BcoDI | GTCTC | 4 cut(s) | 41, 48, 148, 183 |
| BfaI | CTAG | 1 cut(s) | 267 |
| BfoI | RGCGCY | 1 cut(s) | 218 |
| BfuI | GTATCC | 1 cut(s) | 257 |
| BisI | GCNGC | 3 cut(s) | 32, 128, 379 |
| BlpI | GCTNAGC | 2 cut(s) | 135, 259 |
| BlsI | GCNGC | 3 cut(s) | 33, 129, 380 |
| Bme1390I | CCNGG | 2 cut(s) | 310, 341 |
| BmiI | GGNNCC | 1 cut(s) | 216 |
| BmrFI | CCNGG | 2 cut(s) | 310, 341 |
| BmsI | GCATC | 1 cut(s) | 260 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 135, 259 |
| BsaHI | GRCGYC | 3 cut(s) | 150, 215, 348 |
| BsaJI | CCNNGG | 3 cut(s) | 210, 278, 309 |
| BsaWI | WCCGGW | 1 cut(s) | 220 |
| Bse118I | RCCGGY | 1 cut(s) | 152 |
| BseBI | CCWGG | 2 cut(s) | 310, 341 |
| BseDI | CCNNGG | 3 cut(s) | 210, 278, 309 |
| BseGI | GGATG | 1 cut(s) | 349 |
| BseMII | CTCAG | 3 cut(s) | 26, 87, 149 |
| BsePI | GCGCGC | 1 cut(s) | 254 |
| BseX3I | CGGCCG | 1 cut(s) | 58 |
| BseYI | CCCAGC | 1 cut(s) | 123 |
| Bsh1236I | CGCG | 1 cut(s) | 256 |
| Bsh1285I | CGRYCG | 2 cut(s) | 61, 362 |
| BshFI | GGCC | 3 cut(s) | 60, 308, 357 |
| BshNI | GGYRCC | 1 cut(s) | 214 |
| BsiEI | CGRYCG | 2 cut(s) | 61, 362 |
| BsiSI | CCGG | 3 cut(s) | 66, 153, 221 |
| BsmAI | GTCTC | 4 cut(s) | 41, 48, 148, 183 |
| BsmBI | CGTCTC | 3 cut(s) | 41, 48, 148 |
| BsnI | GGCC | 3 cut(s) | 60, 308, 357 |
| Bsp1286I | GDGCHC | 1 cut(s) | 123 |
| Bsp143I | GATC | 1 cut(s) | 167 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 135, 259 |
| BspACI | CCGC | 4 cut(s) | 31, 128, 235, 378 |
| BspANI | GGCC | 3 cut(s) | 60, 308, 357 |
| BspCNI | CTCAG | 3 cut(s) | 27, 88, 148 |
| BspFNI | CGCG | 1 cut(s) | 256 |
| BspLI | GGNNCC | 1 cut(s) | 216 |
| BspT107I | GGYRCC | 1 cut(s) | 214 |
| BsrFI | RCCGGY | 1 cut(s) | 152 |
| BssAI | RCCGGY | 1 cut(s) | 152 |
| BssECI | CCNNGG | 3 cut(s) | 210, 278, 309 |
| BssHII | GCGCGC | 1 cut(s) | 254 |
| BssMI | GATC | 1 cut(s) | 167 |
| BssNI | GRCGYC | 3 cut(s) | 150, 215, 348 |
| Bst2UI | CCWGG | 2 cut(s) | 310, 341 |
| Bst4CI | ACNGT | 2 cut(s) | 12, 363 |
| BstACI | GRCGYC | 3 cut(s) | 150, 215, 348 |
| BstC8I | GCNNGC | 2 cut(s) | 132, 256 |
| BstDEI | CTNAG | 5 cut(s) | 35, 96, 135, 193, 259 |
| BstDSI | CCRYGG | 1 cut(s) | 278 |
| BstF5I | GGATG | 1 cut(s) | 349 |
| BstFNI | CGCG | 1 cut(s) | 256 |
| BstH2I | RGCGCY | 1 cut(s) | 218 |
| BstHHI | GCGC | 3 cut(s) | 217, 256, 258 |
| BstKTI | GATC | 1 cut(s) | 170 |
| BstMAI | GTCTC | 4 cut(s) | 41, 48, 148, 183 |
| BstMBI | GATC | 1 cut(s) | 167 |
| BstMCI | CGRYCG | 2 cut(s) | 61, 362 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 71, 127, 136, 260 |
| BstNI | CCWGG | 2 cut(s) | 310, 341 |
| BstNSI | RCATGY | 1 cut(s) | 294 |
| BstSCI | CCNGG | 2 cut(s) | 308, 339 |
| BstUI | CGCG | 1 cut(s) | 256 |
| BstZI | CGGCCG | 1 cut(s) | 58 |
| BsuI | GTATCC | 1 cut(s) | 257 |
| BsuRI | GGCC | 3 cut(s) | 60, 308, 357 |
| BtgI | CCRYGG | 1 cut(s) | 278 |
| BtsCI | GGATG | 1 cut(s) | 349 |
| BtsI | GCAGTG | 1 cut(s) | 290 |
| BtsIMutI | CAGTG | 2 cut(s) | 121, 290 |
| Cac8I | GCNNGC | 2 cut(s) | 132, 256 |
| CfoI | GCGC | 3 cut(s) | 217, 256, 258 |
| Cfr10I | RCCGGY | 1 cut(s) | 152 |
| CseI | GACGC | 1 cut(s) | 158 |
| CviAII | CATG | 2 cut(s) | 28, 291 |
| CviJI | RGCY | 8 cut(s) | 34, 60, 121, 127, 139, 263, 308, 357 |
| CviKI_1 | RGCY | 8 cut(s) | 34, 60, 121, 127, 139, 263, 308, 357 |
| DdeI | CTNAG | 5 cut(s) | 35, 96, 135, 193, 259 |
| DinI | GGCGCC | 1 cut(s) | 216 |
| DpnI | GATC | 1 cut(s) | 169 |
| DpnII | GATC | 1 cut(s) | 167 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 10 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 10 |
| EaeI | YGGCCR | 1 cut(s) | 58 |
| EagI | CGGCCG | 1 cut(s) | 58 |
| EclXI | CGGCCG | 1 cut(s) | 58 |
| Eco24I | GRGCYC | 1 cut(s) | 123 |
| Eco52I | CGGCCG | 1 cut(s) | 58 |
| EcoRII | CCWGG | 2 cut(s) | 308, 339 |
| EcoT38I | GRGCYC | 1 cut(s) | 123 |
| EgeI | GGCGCC | 1 cut(s) | 216 |
| EheI | GGCGCC | 1 cut(s) | 216 |
| Esp3I | CGTCTC | 3 cut(s) | 41, 48, 148 |
| FaeI | CATG | 2 cut(s) | 31, 294 |
| FaiI | YATR | 4 cut(s) | 29, 242, 292, 318 |
| FatI | CATG | 2 cut(s) | 27, 290 |
| FauI | CCCGC | 1 cut(s) | 242 |
| Fnu4HI | GCNGC | 3 cut(s) | 32, 128, 379 |
| FokI | GGATG | 1 cut(s) | 356 |
| FriOI | GRGCYC | 1 cut(s) | 123 |
| Fsp4HI | GCNGC | 3 cut(s) | 32, 128, 379 |
| FspBI | CTAG | 1 cut(s) | 267 |
| GlaI | GCGC | 3 cut(s) | 216, 255, 257 |
| GluI | GCNGC | 3 cut(s) | 32, 128, 379 |
| GsaI | CCCAGC | 1 cut(s) | 127 |
| HaeII | RGCGCY | 1 cut(s) | 218 |
| HaeIII | GGCC | 3 cut(s) | 60, 308, 357 |
| HapII | CCGG | 3 cut(s) | 66, 153, 221 |
| HgaI | GACGC | 1 cut(s) | 158 |
| HhaI | GCGC | 3 cut(s) | 217, 256, 258 |
| Hin1I | GRCGYC | 3 cut(s) | 150, 215, 348 |
| Hin1II | CATG | 2 cut(s) | 31, 294 |
| Hin6I | GCGC | 3 cut(s) | 215, 254, 256 |
| HinP1I | GCGC | 3 cut(s) | 215, 254, 256 |
| HincII | GTYRAC | 1 cut(s) | 231 |
| HindII | GTYRAC | 1 cut(s) | 231 |
| HinfI | GANTC | 2 cut(s) | 98, 296 |
| HpaII | CCGG | 3 cut(s) | 66, 153, 221 |
| HphI | GGTGA | 1 cut(s) | 335 |
| Hpy166II | GTNNAC | 2 cut(s) | 158, 231 |
| Hpy188I | TCNGA | 3 cut(s) | 97, 148, 165 |
| Hpy188III | TCNNGA | 2 cut(s) | 15, 267 |
| Hpy8I | GTNNAC | 2 cut(s) | 158, 231 |
| Hpy99I | CGWCG | 3 cut(s) | 16, 304, 353 |
| HpyCH4III | ACNGT | 2 cut(s) | 12, 363 |
| HpyCH4IV | ACGT | 1 cut(s) | 348 |
| HpyCH4V | TGCA | 3 cut(s) | 107, 273, 290 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 71, 127, 136, 260 |
| HpyF3I | CTNAG | 5 cut(s) | 35, 96, 135, 193, 259 |
| HpySE526I | ACGT | 1 cut(s) | 348 |
| Hsp92I | GRCGYC | 3 cut(s) | 150, 215, 348 |
| Hsp92II | CATG | 2 cut(s) | 31, 294 |
| HspAI | GCGC | 3 cut(s) | 215, 254, 256 |
| KasI | GGCGCC | 1 cut(s) | 214 |
| Kzo9I | GATC | 1 cut(s) | 167 |
| LpnPI | CCDG | 9 cut(s) | 79, 137, 166, 234, 295, 322, 326, 353, 353 |
| LweI | GCATC | 1 cut(s) | 260 |
| MaeI | CTAG | 1 cut(s) | 267 |
| MaeII | ACGT | 1 cut(s) | 348 |
| MaeIII | GTNAC | 1 cut(s) | 293 |
| MalI | GATC | 1 cut(s) | 169 |
| MboI | GATC | 1 cut(s) | 167 |
| MfeI | CAATTG | 1 cut(s) | 78 |
| MhlI | GDGCHC | 1 cut(s) | 123 |
| MluCI | AATT | 1 cut(s) | 78 |
| Mly113I | GGCGCC | 1 cut(s) | 215 |
| MlyI | GAGTC | 2 cut(s) | 107, 290 |
| MnlI | CCTC | 3 cut(s) | 165, 220, 298 |
| MslI | CAYNNNNRTG | 1 cut(s) | 283 |
| MspI | CCGG | 3 cut(s) | 66, 153, 221 |
| MspR9I | CCNGG | 2 cut(s) | 310, 341 |
| MunI | CAATTG | 1 cut(s) | 78 |
| MvaI | CCWGG | 2 cut(s) | 310, 341 |
| MvnI | CGCG | 1 cut(s) | 256 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 71, 127, 136, 260 |
| NarI | GGCGCC | 1 cut(s) | 215 |
| NdeII | GATC | 1 cut(s) | 167 |
| NlaIII | CATG | 2 cut(s) | 31, 294 |
| NlaIV | GGNNCC | 1 cut(s) | 216 |
| NmeAIII | GCCGAG | 1 cut(s) | 191 |
| NmuCI | GTSAC | 1 cut(s) | 293 |
| NspI | RCATGY | 1 cut(s) | 294 |
| OliI | CACNNNNGTG | 1 cut(s) | 283 |
| PauI | GCGCGC | 1 cut(s) | 254 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 138 |
| PflFI | GACNNNGTC | 2 cut(s) | 194, 363 |
| PfoI | TCCNGGA | 1 cut(s) | 339 |
| PkrI | GCNGC | 3 cut(s) | 33, 129, 380 |
| PleI | GAGTC | 2 cut(s) | 106, 290 |
| PluTI | GGCGCC | 1 cut(s) | 218 |
| PpsI | GAGTC | 2 cut(s) | 106, 290 |
| Psp6I | CCWGG | 2 cut(s) | 308, 339 |
| PspFI | CCCAGC | 1 cut(s) | 123 |
| PspGI | CCWGG | 2 cut(s) | 308, 339 |
| PspN4I | GGNNCC | 1 cut(s) | 216 |
| PsyI | GACNNNGTC | 2 cut(s) | 194, 363 |
| PteI | GCGCGC | 1 cut(s) | 254 |
| RseI | CAYNNNNRTG | 1 cut(s) | 283 |
| SatI | GCNGC | 3 cut(s) | 32, 128, 379 |
| Sau3AI | GATC | 1 cut(s) | 167 |
| SchI | GAGTC | 2 cut(s) | 107, 290 |
| ScrFI | CCNGG | 2 cut(s) | 310, 341 |
| SduI | GDGCHC | 1 cut(s) | 123 |
| SetI | ASST | 4 cut(s) | 141, 247, 265, 351 |
| SfaNI | GCATC | 1 cut(s) | 260 |
| SfoI | GGCGCC | 1 cut(s) | 216 |
| SgrAI | CRCCGGYG | 1 cut(s) | 152 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 283 |
| Sse9I | AATT | 1 cut(s) | 78 |
| SsiI | CCGC | 4 cut(s) | 31, 128, 235, 378 |
| SspDI | GGCGCC | 1 cut(s) | 214 |
| SspMI | CTAG | 1 cut(s) | 267 |
| StyD4I | CCNGG | 2 cut(s) | 308, 339 |
| TaaI | ACNGT | 2 cut(s) | 12, 363 |
| TaiI | ACGT | 1 cut(s) | 351 |
| TaqI | TCGA | 4 cut(s) | 14, 101, 170, 299 |
| TasI | AATT | 1 cut(s) | 78 |
| TauI | GCSGC | 3 cut(s) | 34, 130, 381 |
| TscAI | CASTG | 2 cut(s) | 121, 290 |
| TseFI | GTSAC | 1 cut(s) | 293 |
| Tsp45I | GTSAC | 1 cut(s) | 293 |
| TspDTI | ATGAA | 1 cut(s) | 342 |
| TspGWI | ACGGA | 2 cut(s) | 239, 317 |
| TspRI | CASTG | 2 cut(s) | 121, 290 |
| Tth111I | GACNNNGTC | 2 cut(s) | 194, 363 |
| XbaI | TCTAGA | 1 cut(s) | 266 |
| XceI | RCATGY | 1 cut(s) | 294 |
| XspI | CTAG | 1 cut(s) | 267 |
| ZraI | GACGTC | 1 cut(s) | 349 |