isoform X1
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1008 |
| AccII | CGCG | 1 cut(s) | 824 |
| AccIII | TCCGGA | 1 cut(s) | 311 |
| AciI | CCGC | 2 cut(s) | 210, 422 |
| AcoI | YGGCCR | 3 cut(s) | 922, 926, 988 |
| AcsI | RAATTY | 1 cut(s) | 344 |
| AfaI | GTAC | 2 cut(s) | 299, 1030 |
| AflII | CTTAAG | 2 cut(s) | 275, 583 |
| AflIII | ACRYGT | 1 cut(s) | 1025 |
| AgsI | TTSAA | 9 cut(s) | 25, 220, 391, 406, 431, 481, 578, 676, 882 |
| AhlI | ACTAGT | 1 cut(s) | 875 |
| AjnI | CCWGG | 1 cut(s) | 230 |
| AluBI | AGCT | 3 cut(s) | 381, 556, 807 |
| AluI | AGCT | 3 cut(s) | 381, 556, 807 |
| Aor13HI | TCCGGA | 1 cut(s) | 311 |
| AoxI | GGCC | 4 cut(s) | 914, 922, 926, 988 |
| ApeKI | GCWGC | 3 cut(s) | 14, 754, 953 |
| ApoI | RAATTY | 1 cut(s) | 344 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 529, 561, 631, 663 |
| AseI | ATTAAT | 1 cut(s) | 725 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 435 |
| AspLEI | GCGC | 2 cut(s) | 826, 1036 |
| AspS9I | GGNCC | 2 cut(s) | 419, 639 |
| AsuHPI | GGTGA | 4 cut(s) | 263, 357, 509, 1010 |
| AsuII | TTCGAA | 1 cut(s) | 940 |
| AvaII | GGWCC | 2 cut(s) | 419, 639 |
| BaeGI | GKGCMC | 1 cut(s) | 1011 |
| BalI | TGGCCA | 1 cut(s) | 990 |
| BanI | GGYRCC | 1 cut(s) | 1008 |
| BauI | CACGAG | 1 cut(s) | 967 |
| BbsI | GAAGAC | 1 cut(s) | 159 |
| BbvI | GCAGC | 2 cut(s) | 741, 965 |
| BccI | CCATC | 1 cut(s) | 925 |
| BceAI | ACGGC | 1 cut(s) | 436 |
| BciT130I | CCWGG | 1 cut(s) | 232 |
| BciVI | GTATCC | 1 cut(s) | 35 |
| BclI | TGATCA | 1 cut(s) | 145 |
| BcuI | ACTAGT | 1 cut(s) | 875 |
| BfaI | CTAG | 2 cut(s) | 540, 876 |
| BfmI | CTRYAG | 1 cut(s) | 951 |
| BfrI | CTTAAG | 2 cut(s) | 275, 583 |
| BfuI | GTATCC | 1 cut(s) | 35 |
| BisI | GCNGC | 3 cut(s) | 15, 755, 954 |
| BlsI | GCNGC | 3 cut(s) | 16, 756, 955 |
| Bme1390I | CCNGG | 1 cut(s) | 232 |
| Bme18I | GGWCC | 2 cut(s) | 419, 639 |
| BmgT120I | GGNCC | 2 cut(s) | 419, 639 |
| BmiI | GGNNCC | 2 cut(s) | 779, 1010 |
| BmrFI | CCNGG | 1 cut(s) | 232 |
| BmsI | GCATC | 1 cut(s) | 859 |
| BpiI | GAAGAC | 1 cut(s) | 159 |
| Bpu14I | TTCGAA | 1 cut(s) | 940 |
| BsaJI | CCNNGG | 1 cut(s) | 231 |
| BsaWI | WCCGGW | 1 cut(s) | 311 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 593, 623, 656, 686 |
| Bse118I | RCCGGY | 1 cut(s) | 924 |
| Bse1I | ACTGG | 1 cut(s) | 64 |
| Bse3DI | GCAATG | 1 cut(s) | 475 |
| BseAI | TCCGGA | 1 cut(s) | 311 |
| BseBI | CCWGG | 1 cut(s) | 232 |
| BseDI | CCNNGG | 1 cut(s) | 231 |
| BseGI | GGATG | 3 cut(s) | 16, 835, 917 |
| BseMI | GCAATG | 1 cut(s) | 475 |
| BseMII | CTCAG | 2 cut(s) | 510, 603 |
| BseNI | ACTGG | 1 cut(s) | 64 |
| BseRI | GAGGAG | 2 cut(s) | 240, 985 |
| BseSI | GKGCMC | 1 cut(s) | 1011 |
| BseX3I | CGGCCG | 1 cut(s) | 922 |
| BseXI | GCAGC | 2 cut(s) | 741, 965 |
| Bsh1236I | CGCG | 1 cut(s) | 824 |
| Bsh1285I | CGRYCG | 1 cut(s) | 925 |
| BshFI | GGCC | 4 cut(s) | 916, 924, 928, 990 |
| BshNI | GGYRCC | 1 cut(s) | 1008 |
| BsiEI | CGRYCG | 1 cut(s) | 925 |
| BsiSI | CCGG | 3 cut(s) | 312, 921, 925 |
| BsnI | GGCC | 4 cut(s) | 916, 924, 928, 990 |
| Bsp119I | TTCGAA | 1 cut(s) | 940 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1011 |
| Bsp13I | TCCGGA | 1 cut(s) | 311 |
| Bsp143I | GATC | 2 cut(s) | 145, 443 |
| BspACI | CCGC | 2 cut(s) | 210, 422 |
| BspANI | GGCC | 4 cut(s) | 916, 924, 928, 990 |
| BspCNI | CTCAG | 2 cut(s) | 511, 604 |
| BspEI | TCCGGA | 1 cut(s) | 311 |
| BspFNI | CGCG | 1 cut(s) | 824 |
| BspLI | GGNNCC | 2 cut(s) | 779, 1010 |
| BspMAI | CTGCAG | 1 cut(s) | 955 |
| BspT104I | TTCGAA | 1 cut(s) | 940 |
| BspT107I | GGYRCC | 1 cut(s) | 1008 |
| BspTI | CTTAAG | 2 cut(s) | 275, 583 |
| BsrDI | GCAATG | 1 cut(s) | 475 |
| BsrFI | RCCGGY | 1 cut(s) | 924 |
| BsrI | ACTGG | 1 cut(s) | 64 |
| BssAI | RCCGGY | 1 cut(s) | 924 |
| BssECI | CCNNGG | 1 cut(s) | 231 |
| BssMI | GATC | 2 cut(s) | 145, 443 |
| BssSI | CACGAG | 1 cut(s) | 967 |
| Bst2BI | CACGAG | 1 cut(s) | 967 |
| Bst2UI | CCWGG | 1 cut(s) | 232 |
| Bst6I | CTCTTC | 1 cut(s) | 426 |
| BstAFI | CTTAAG | 2 cut(s) | 275, 583 |
| BstBI | TTCGAA | 1 cut(s) | 940 |
| BstC8I | GCNNGC | 3 cut(s) | 379, 628, 926 |
| BstDEI | CTNAG | 2 cut(s) | 519, 612 |
| BstF5I | GGATG | 3 cut(s) | 16, 835, 917 |
| BstFNI | CGCG | 1 cut(s) | 824 |
| BstHHI | GCGC | 2 cut(s) | 826, 1036 |
| BstKTI | GATC | 2 cut(s) | 148, 446 |
| BstMBI | GATC | 2 cut(s) | 145, 443 |
| BstMCI | CGRYCG | 1 cut(s) | 925 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 448, 754 |
| BstNI | CCWGG | 1 cut(s) | 232 |
| BstNSI | RCATGY | 3 cut(s) | 49, 630, 748 |
| BstSCI | CCNGG | 1 cut(s) | 230 |
| BstSFI | CTRYAG | 1 cut(s) | 951 |
| BstSLI | GKGCMC | 1 cut(s) | 1011 |
| BstUI | CGCG | 1 cut(s) | 824 |
| BstV1I | GCAGC | 2 cut(s) | 741, 965 |
| BstV2I | GAAGAC | 1 cut(s) | 159 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 769 |
| BstZI | CGGCCG | 1 cut(s) | 922 |
| BsuI | GTATCC | 1 cut(s) | 35 |
| BsuRI | GGCC | 4 cut(s) | 916, 924, 928, 990 |
| BtsCI | GGATG | 3 cut(s) | 16, 835, 917 |
| Cac8I | GCNNGC | 3 cut(s) | 379, 628, 926 |
| CfoI | GCGC | 2 cut(s) | 826, 1036 |
| Cfr10I | RCCGGY | 1 cut(s) | 924 |
| Cfr13I | GGNCC | 2 cut(s) | 419, 639 |
| Csp6I | GTAC | 2 cut(s) | 298, 1029 |
| CviAII | CATG | 7 cut(s) | 46, 122, 627, 737, 745, 811, 827 |
| CviQI | GTAC | 2 cut(s) | 298, 1029 |
| DdeI | CTNAG | 2 cut(s) | 519, 612 |
| DpnI | GATC | 2 cut(s) | 147, 445 |
| DpnII | GATC | 2 cut(s) | 145, 443 |
| EaeI | YGGCCR | 3 cut(s) | 922, 926, 988 |
| EagI | CGGCCG | 1 cut(s) | 922 |
| Eam1104I | CTCTTC | 1 cut(s) | 426 |
| EarI | CTCTTC | 1 cut(s) | 426 |
| EciI | GGCGGA | 1 cut(s) | 411 |
| EclXI | CGGCCG | 1 cut(s) | 922 |
| Eco47I | GGWCC | 2 cut(s) | 419, 639 |
| Eco52I | CGGCCG | 1 cut(s) | 922 |
| EcoRII | CCWGG | 1 cut(s) | 230 |
| EcoT22I | ATGCAT | 1 cut(s) | 475 |
| FaeI | CATG | 7 cut(s) | 49, 125, 630, 740, 748, 814, 830 |
| FatI | CATG | 7 cut(s) | 45, 121, 626, 736, 744, 810, 826 |
| FbaI | TGATCA | 1 cut(s) | 145 |
| Fnu4HI | GCNGC | 3 cut(s) | 15, 755, 954 |
| FokI | GGATG | 3 cut(s) | 23, 822, 904 |
| FseI | GGCCGGCC | 1 cut(s) | 928 |
| Fsp4HI | GCNGC | 3 cut(s) | 15, 755, 954 |
| FspBI | CTAG | 2 cut(s) | 540, 876 |
| GlaI | GCGC | 2 cut(s) | 825, 1035 |
| GluI | GCNGC | 3 cut(s) | 15, 755, 954 |
| HaeIII | GGCC | 4 cut(s) | 916, 924, 928, 990 |
| HapII | CCGG | 3 cut(s) | 312, 921, 925 |
| HhaI | GCGC | 2 cut(s) | 826, 1036 |
| Hin1II | CATG | 7 cut(s) | 49, 125, 630, 740, 748, 814, 830 |
| Hin6I | GCGC | 2 cut(s) | 824, 1034 |
| HinP1I | GCGC | 2 cut(s) | 824, 1034 |
| HincII | GTYRAC | 1 cut(s) | 328 |
| HindII | GTYRAC | 1 cut(s) | 328 |
| HinfI | GANTC | 3 cut(s) | 110, 521, 815 |
| HpaII | CCGG | 3 cut(s) | 312, 921, 925 |
| HphI | GGTGA | 4 cut(s) | 263, 357, 509, 1010 |
| Hpy166II | GTNNAC | 6 cut(s) | 298, 328, 639, 742, 793, 1029 |
| Hpy188I | TCNGA | 3 cut(s) | 115, 613, 1043 |
| Hpy188III | TCNNGA | 1 cut(s) | 312 |
| Hpy8I | GTNNAC | 6 cut(s) | 298, 328, 639, 742, 793, 1029 |
| HpyAV | CCTTC | 3 cut(s) | 572, 613, 956 |
| HpyCH4IV | ACGT | 1 cut(s) | 1025 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 448, 754 |
| HpyF3I | CTNAG | 2 cut(s) | 519, 612 |
| HpySE526I | ACGT | 1 cut(s) | 1025 |
| Hsp92II | CATG | 7 cut(s) | 49, 125, 630, 740, 748, 814, 830 |
| HspAI | GCGC | 2 cut(s) | 824, 1034 |
| Kpn2I | TCCGGA | 1 cut(s) | 311 |
| KroI | GCCGGC | 1 cut(s) | 924 |
| KroNI | GCCGGC | 1 cut(s) | 926 |
| Ksp22I | TGATCA | 1 cut(s) | 145 |
| Kzo9I | GATC | 2 cut(s) | 145, 443 |
| LpnPI | CCDG | 9 cut(s) | 45, 217, 244, 325, 475, 794, 811, 934, 938 |
| Lsp1109I | GCAGC | 2 cut(s) | 741, 965 |
| LweI | GCATC | 1 cut(s) | 859 |
| MaeI | CTAG | 2 cut(s) | 540, 876 |
| MaeII | ACGT | 1 cut(s) | 1025 |
| MaeIII | GTNAC | 2 cut(s) | 184, 193 |
| MalI | GATC | 2 cut(s) | 147, 445 |
| MboI | GATC | 2 cut(s) | 145, 443 |
| MboII | GAAGA | 8 cut(s) | 76, 159, 353, 418, 443, 688, 878, 971 |
| MfeI | CAATTG | 1 cut(s) | 532 |
| MhlI | GDGCHC | 1 cut(s) | 1011 |
| MlsI | TGGCCA | 1 cut(s) | 990 |
| MluCI | AATT | 6 cut(s) | 127, 316, 344, 532, 722, 726 |
| MluNI | TGGCCA | 1 cut(s) | 990 |
| MlyI | GAGTC | 1 cut(s) | 530 |
| MmeI | TCCRAC | 2 cut(s) | 435, 750 |
| Mox20I | TGGCCA | 1 cut(s) | 990 |
| Mph1103I | ATGCAT | 1 cut(s) | 475 |
| MroI | TCCGGA | 1 cut(s) | 311 |
| MroNI | GCCGGC | 1 cut(s) | 924 |
| MroXI | GAANNNNTTC | 1 cut(s) | 435 |
| MscI | TGGCCA | 1 cut(s) | 990 |
| MseI | TTAA | 6 cut(s) | 276, 528, 584, 591, 725, 894 |
| MslI | CAYNNNNRTG | 1 cut(s) | 735 |
| Msp20I | TGGCCA | 1 cut(s) | 990 |
| MspA1I | CMGCKG | 1 cut(s) | 210 |
| MspCI | CTTAAG | 2 cut(s) | 275, 583 |
| MspI | CCGG | 3 cut(s) | 312, 921, 925 |
| MspR9I | CCNGG | 1 cut(s) | 232 |
| MunI | CAATTG | 1 cut(s) | 532 |
| MvaI | CCWGG | 1 cut(s) | 232 |
| MvnI | CGCG | 1 cut(s) | 824 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 448, 754 |
| NaeI | GCCGGC | 1 cut(s) | 926 |
| NdeII | GATC | 2 cut(s) | 145, 443 |
| NgoMIV | GCCGGC | 1 cut(s) | 924 |
| NlaIII | CATG | 7 cut(s) | 49, 125, 630, 740, 748, 814, 830 |
| NlaIV | GGNNCC | 2 cut(s) | 779, 1010 |
| NmuCI | GTSAC | 1 cut(s) | 184 |
| NsiI | ATGCAT | 1 cut(s) | 475 |
| NspI | RCATGY | 3 cut(s) | 49, 630, 748 |
| NspV | TTCGAA | 1 cut(s) | 940 |
| PaeI | GCATGC | 1 cut(s) | 630 |
| PdiI | GCCGGC | 1 cut(s) | 926 |
| PdmI | GAANNNNTTC | 1 cut(s) | 435 |
| PfeI | GAWTC | 2 cut(s) | 110, 815 |
| PkrI | GCNGC | 3 cut(s) | 16, 756, 955 |
| PleI | GAGTC | 1 cut(s) | 529 |
| PpsI | GAGTC | 1 cut(s) | 529 |
| PshBI | ATTAAT | 1 cut(s) | 725 |
| Psp6I | CCWGG | 1 cut(s) | 230 |
| PspGI | CCWGG | 1 cut(s) | 230 |
| PspN4I | GGNNCC | 2 cut(s) | 779, 1010 |
| PspPI | GGNCC | 2 cut(s) | 419, 639 |
| PstI | CTGCAG | 1 cut(s) | 955 |
| RigI | GGCCGGCC | 1 cut(s) | 928 |
| RsaI | GTAC | 2 cut(s) | 299, 1030 |
| RsaNI | GTAC | 2 cut(s) | 298, 1029 |
| RseI | CAYNNNNRTG | 1 cut(s) | 735 |
| SaqAI | TTAA | 6 cut(s) | 276, 528, 584, 591, 725, 894 |
| SatI | GCNGC | 3 cut(s) | 15, 755, 954 |
| Sau3AI | GATC | 2 cut(s) | 145, 443 |
| Sau96I | GGNCC | 2 cut(s) | 419, 639 |
| SchI | GAGTC | 1 cut(s) | 530 |
| ScrFI | CCNGG | 1 cut(s) | 232 |
| SduI | GDGCHC | 1 cut(s) | 1011 |
| SfaNI | GCATC | 1 cut(s) | 859 |
| SfcI | CTRYAG | 1 cut(s) | 951 |
| SfuI | TTCGAA | 1 cut(s) | 940 |
| SinI | GGWCC | 2 cut(s) | 419, 639 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 735 |
| SmlI | CTYRAG | 2 cut(s) | 275, 583 |
| SmoI | CTYRAG | 2 cut(s) | 275, 583 |
| SpeI | ACTAGT | 1 cut(s) | 875 |
| SphI | GCATGC | 1 cut(s) | 630 |
| Sse9I | AATT | 6 cut(s) | 127, 316, 344, 532, 722, 726 |
| SsiI | CCGC | 2 cut(s) | 210, 422 |
| SspMI | CTAG | 2 cut(s) | 540, 876 |
| StyD4I | CCNGG | 1 cut(s) | 230 |
| TaiI | ACGT | 1 cut(s) | 1028 |
| TaqI | TCGA | 1 cut(s) | 940 |
| TasI | AATT | 6 cut(s) | 127, 316, 344, 532, 722, 726 |
| TatI | WGTACW | 1 cut(s) | 1028 |
| TfiI | GAWTC | 2 cut(s) | 110, 815 |
| Tru1I | TTAA | 6 cut(s) | 276, 528, 584, 591, 725, 894 |
| Tru9I | TTAA | 6 cut(s) | 276, 528, 584, 591, 725, 894 |
| TseFI | GTSAC | 1 cut(s) | 184 |
| TseI | GCWGC | 3 cut(s) | 14, 754, 953 |
| Tsp45I | GTSAC | 1 cut(s) | 184 |
| TspDTI | ATGAA | 6 cut(s) | 246, 365, 719, 824, 879, 959 |
| Vha464I | CTTAAG | 2 cut(s) | 275, 583 |
| VpaK11BI | GGWCC | 2 cut(s) | 419, 639 |
| VspI | ATTAAT | 1 cut(s) | 725 |
| XapI | RAATTY | 1 cut(s) | 344 |
| XceI | RCATGY | 3 cut(s) | 49, 630, 748 |
| XmnI | GAANNNNTTC | 1 cut(s) | 435 |
| XspI | CTAG | 2 cut(s) | 540, 876 |
| Zsp2I | ATGCAT | 1 cut(s) | 475 |