isoform X1
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1427 |
| AccB1I | GGYRCC | 1 cut(s) | 969 |
| AciI | CCGC | 2 cut(s) | 135, 1380 |
| AclWI | GGATC | 1 cut(s) | 328 |
| AcoI | YGGCCR | 1 cut(s) | 1381 |
| AcsI | RAATTY | 2 cut(s) | 37, 632 |
| AcyI | GRCGYC | 1 cut(s) | 864 |
| AfaI | GTAC | 4 cut(s) | 431, 747, 757, 860 |
| AflIII | ACRYGT | 2 cut(s) | 338, 790 |
| AjiI | CACGTC | 1 cut(s) | 791 |
| AjnI | CCWGG | 2 cut(s) | 78, 985 |
| AleI | CACNNNNGTG | 1 cut(s) | 789 |
| Alw26I | GTCTC | 3 cut(s) | 527, 1119, 1143 |
| AlwI | GGATC | 1 cut(s) | 328 |
| Ama87I | CYCGRG | 1 cut(s) | 541 |
| AoxI | GGCC | 3 cut(s) | 1322, 1381, 1399 |
| ApeKI | GCWGC | 2 cut(s) | 611, 1155 |
| ApoI | RAATTY | 2 cut(s) | 37, 632 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1298, 1330 |
| AspA2I | CCTAGG | 1 cut(s) | 1325 |
| AspLEI | GCGC | 1 cut(s) | 923 |
| AspS9I | GGNCC | 1 cut(s) | 1399 |
| AsuC2I | CCSGG | 2 cut(s) | 542, 543 |
| AsuHPI | GGTGA | 5 cut(s) | 269, 770, 854, 1111, 1127 |
| AsuII | TTCGAA | 2 cut(s) | 295, 1265 |
| AvaI | CYCGRG | 1 cut(s) | 541 |
| AvrII | CCTAGG | 1 cut(s) | 1325 |
| BanI | GGYRCC | 1 cut(s) | 969 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 842, 874 |
| BbsI | GAAGAC | 2 cut(s) | 632, 1421 |
| BbvI | GCAGC | 2 cut(s) | 623, 1142 |
| BccI | CCATC | 3 cut(s) | 46, 1105, 1410 |
| BceAI | ACGGC | 3 cut(s) | 736, 957, 978 |
| BciT130I | CCWGG | 2 cut(s) | 80, 987 |
| BclI | TGATCA | 2 cut(s) | 568, 1081 |
| BcnI | CCSGG | 2 cut(s) | 542, 543 |
| BcoDI | GTCTC | 3 cut(s) | 527, 1119, 1143 |
| BfaI | CTAG | 4 cut(s) | 462, 602, 1326, 1347 |
| BfoI | RGCGCY | 1 cut(s) | 924 |
| BfuAI | ACCTGC | 1 cut(s) | 1427 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1389 |
| BisI | GCNGC | 3 cut(s) | 612, 1156, 1381 |
| BlnI | CCTAGG | 1 cut(s) | 1325 |
| BlsI | GCNGC | 3 cut(s) | 613, 1157, 1382 |
| Bme1390I | CCNGG | 4 cut(s) | 80, 542, 543, 987 |
| BmeT110I | CYCGRG | 1 cut(s) | 541 |
| BmgBI | CACGTC | 1 cut(s) | 791 |
| BmgT120I | GGNCC | 1 cut(s) | 1399 |
| BmiI | GGNNCC | 2 cut(s) | 193, 971 |
| BmrFI | CCNGG | 4 cut(s) | 80, 542, 543, 987 |
| BmsI | GCATC | 6 cut(s) | 73, 233, 925, 980, 1050, 1092 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1131 |
| BpiI | GAAGAC | 2 cut(s) | 632, 1421 |
| Bpu14I | TTCGAA | 2 cut(s) | 295, 1265 |
| BpuEI | CTTGAG | 1 cut(s) | 1316 |
| BpuMI | CCSGG | 2 cut(s) | 542, 543 |
| BsaHI | GRCGYC | 1 cut(s) | 864 |
| BsaJI | CCNNGG | 3 cut(s) | 541, 985, 1325 |
| BsaWI | WCCGGW | 2 cut(s) | 707, 846 |
| Bse118I | RCCGGY | 1 cut(s) | 866 |
| Bse3DI | GCAATG | 2 cut(s) | 112, 1285 |
| BseBI | CCWGG | 2 cut(s) | 80, 987 |
| BseDI | CCNNGG | 3 cut(s) | 541, 985, 1325 |
| BseGI | GGATG | 4 cut(s) | 88, 206, 248, 995 |
| BseMI | GCAATG | 2 cut(s) | 112, 1285 |
| BseMII | CTCAG | 2 cut(s) | 795, 1103 |
| BseRI | GAGGAG | 2 cut(s) | 821, 1365 |
| BseXI | GCAGC | 2 cut(s) | 623, 1142 |
| BshFI | GGCC | 3 cut(s) | 1324, 1383, 1401 |
| BshNI | GGYRCC | 1 cut(s) | 969 |
| BsiHKCI | CYCGRG | 1 cut(s) | 541 |
| BsiSI | CCGG | 4 cut(s) | 542, 708, 847, 867 |
| BsmAI | GTCTC | 3 cut(s) | 527, 1119, 1143 |
| BsmI | GAATGC | 1 cut(s) | 618 |
| BsnI | GGCC | 3 cut(s) | 1324, 1383, 1401 |
| BsoBI | CYCGRG | 1 cut(s) | 541 |
| Bsp119I | TTCGAA | 2 cut(s) | 295, 1265 |
| Bsp143I | GATC | 3 cut(s) | 320, 568, 1081 |
| BspACI | CCGC | 2 cut(s) | 135, 1380 |
| BspANI | GGCC | 3 cut(s) | 1324, 1383, 1401 |
| BspCNI | CTCAG | 2 cut(s) | 796, 1102 |
| BspLI | GGNNCC | 2 cut(s) | 193, 971 |
| BspMI | ACCTGC | 1 cut(s) | 1427 |
| BspPI | GGATC | 1 cut(s) | 328 |
| BspT104I | TTCGAA | 2 cut(s) | 295, 1265 |
| BspT107I | GGYRCC | 1 cut(s) | 969 |
| BsrDI | GCAATG | 2 cut(s) | 112, 1285 |
| BsrFI | RCCGGY | 1 cut(s) | 866 |
| BssAI | RCCGGY | 1 cut(s) | 866 |
| BssECI | CCNNGG | 3 cut(s) | 541, 985, 1325 |
| BssMI | GATC | 3 cut(s) | 320, 568, 1081 |
| BssNI | GRCGYC | 1 cut(s) | 864 |
| BssT1I | CCWWGG | 1 cut(s) | 1325 |
| Bst2UI | CCWGG | 2 cut(s) | 80, 987 |
| Bst4CI | ACNGT | 3 cut(s) | 479, 760, 1166 |
| Bst6I | CTCTTC | 4 cut(s) | 80, 342, 668, 845 |
| BstACI | GRCGYC | 1 cut(s) | 864 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 944 |
| BstBI | TTCGAA | 2 cut(s) | 295, 1265 |
| BstC8I | GCNNGC | 4 cut(s) | 234, 616, 868, 1276 |
| BstDEI | CTNAG | 4 cut(s) | 101, 483, 804, 1089 |
| BstEII | GGTNACC | 1 cut(s) | 842 |
| BstF5I | GGATG | 4 cut(s) | 88, 206, 248, 995 |
| BstH2I | RGCGCY | 1 cut(s) | 924 |
| BstHHI | GCGC | 1 cut(s) | 923 |
| BstKTI | GATC | 3 cut(s) | 323, 571, 1084 |
| BstMAI | GTCTC | 3 cut(s) | 527, 1119, 1143 |
| BstMBI | GATC | 3 cut(s) | 320, 568, 1081 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 446, 611, 624, 944, 1043, 1060, 1152, 1389, 1398 |
| BstNI | CCWGG | 2 cut(s) | 80, 987 |
| BstNSI | RCATGY | 2 cut(s) | 342, 505 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1131 |
| BstPI | GGTNACC | 1 cut(s) | 842 |
| BstSCI | CCNGG | 4 cut(s) | 78, 540, 541, 985 |
| BstV1I | GCAGC | 2 cut(s) | 623, 1142 |
| BstV2I | GAAGAC | 2 cut(s) | 632, 1421 |
| BsuRI | GGCC | 3 cut(s) | 1324, 1383, 1401 |
| BtrI | CACGTC | 1 cut(s) | 791 |
| BtsCI | GGATG | 4 cut(s) | 88, 206, 248, 995 |
| BtsI | GCAGTG | 1 cut(s) | 1141 |
| BtsIMutI | CAGTG | 1 cut(s) | 1141 |
| BveI | ACCTGC | 1 cut(s) | 1427 |
| Cac8I | GCNNGC | 4 cut(s) | 234, 616, 868, 1276 |
| CfoI | GCGC | 1 cut(s) | 923 |
| Cfr10I | RCCGGY | 1 cut(s) | 866 |
| Cfr13I | GGNCC | 1 cut(s) | 1399 |
| Cfr9I | CCCGGG | 1 cut(s) | 541 |
| CseI | GACGC | 1 cut(s) | 872 |
| Csp6I | GTAC | 4 cut(s) | 430, 746, 756, 859 |
| CviAII | CATG | 5 cut(s) | 308, 339, 502, 725, 1196 |
| CviQI | GTAC | 4 cut(s) | 430, 746, 756, 859 |
| DdeI | CTNAG | 4 cut(s) | 101, 483, 804, 1089 |
| DpnI | GATC | 3 cut(s) | 322, 570, 1083 |
| DpnII | GATC | 3 cut(s) | 320, 568, 1081 |
| EaeI | YGGCCR | 1 cut(s) | 1381 |
| Eam1104I | CTCTTC | 4 cut(s) | 80, 342, 668, 845 |
| EarI | CTCTTC | 4 cut(s) | 80, 342, 668, 845 |
| Eco130I | CCWWGG | 1 cut(s) | 1325 |
| Eco147I | AGGCCT | 1 cut(s) | 1324 |
| Eco88I | CYCGRG | 1 cut(s) | 541 |
| Eco91I | GGTNACC | 1 cut(s) | 842 |
| EcoO65I | GGTNACC | 1 cut(s) | 842 |
| EcoRII | CCWGG | 2 cut(s) | 78, 985 |
| EcoT14I | CCWWGG | 1 cut(s) | 1325 |
| EcoT22I | ATGCAT | 1 cut(s) | 940 |
| ErhI | CCWWGG | 1 cut(s) | 1325 |
| FaeI | CATG | 5 cut(s) | 311, 342, 505, 728, 1199 |
| FatI | CATG | 5 cut(s) | 307, 338, 501, 724, 1195 |
| FauNDI | CATATG | 1 cut(s) | 22 |
| FbaI | TGATCA | 2 cut(s) | 568, 1081 |
| Fnu4HI | GCNGC | 3 cut(s) | 612, 1156, 1381 |
| FokI | GGATG | 4 cut(s) | 95, 213, 255, 1002 |
| Fsp4HI | GCNGC | 3 cut(s) | 612, 1156, 1381 |
| FspBI | CTAG | 4 cut(s) | 462, 602, 1326, 1347 |
| GlaI | GCGC | 1 cut(s) | 922 |
| GluI | GCNGC | 3 cut(s) | 612, 1156, 1381 |
| HaeII | RGCGCY | 1 cut(s) | 924 |
| HaeIII | GGCC | 3 cut(s) | 1324, 1383, 1401 |
| HapII | CCGG | 4 cut(s) | 542, 708, 847, 867 |
| HgaI | GACGC | 1 cut(s) | 872 |
| HhaI | GCGC | 1 cut(s) | 923 |
| Hin1I | GRCGYC | 1 cut(s) | 864 |
| Hin1II | CATG | 5 cut(s) | 311, 342, 505, 728, 1199 |
| Hin6I | GCGC | 1 cut(s) | 921 |
| HinP1I | GCGC | 1 cut(s) | 921 |
| HinfI | GANTC | 5 cut(s) | 694, 775, 817, 828, 1087 |
| HpaII | CCGG | 4 cut(s) | 542, 708, 847, 867 |
| HphI | GGTGA | 5 cut(s) | 269, 770, 854, 1111, 1127 |
| Hpy166II | GTNNAC | 3 cut(s) | 28, 274, 756 |
| Hpy188I | TCNGA | 2 cut(s) | 1086, 1092 |
| Hpy188III | TCNNGA | 5 cut(s) | 334, 897, 959, 1333, 1347 |
| Hpy8I | GTNNAC | 3 cut(s) | 28, 274, 756 |
| Hpy99I | CGWCG | 2 cut(s) | 385, 866 |
| HpyAV | CCTTC | 2 cut(s) | 191, 451 |
| HpyCH4III | ACNGT | 3 cut(s) | 479, 760, 1166 |
| HpyCH4IV | ACGT | 1 cut(s) | 790 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 446, 611, 624, 944, 1043, 1060, 1152, 1389, 1398 |
| HpyF3I | CTNAG | 4 cut(s) | 101, 483, 804, 1089 |
| HpySE526I | ACGT | 1 cut(s) | 790 |
| Hsp92I | GRCGYC | 1 cut(s) | 864 |
| Hsp92II | CATG | 5 cut(s) | 311, 342, 505, 728, 1199 |
| HspAI | GCGC | 1 cut(s) | 921 |
| KroI | GCCGGC | 1 cut(s) | 866 |
| KroNI | GCCGGC | 1 cut(s) | 868 |
| Ksp22I | TGATCA | 2 cut(s) | 568, 1081 |
| Kzo9I | GATC | 3 cut(s) | 320, 568, 1081 |
| LmnI | GCTCC | 1 cut(s) | 733 |
| Lsp1109I | GCAGC | 2 cut(s) | 623, 1142 |
| LweI | GCATC | 6 cut(s) | 73, 233, 925, 980, 1050, 1092 |
| MaeI | CTAG | 4 cut(s) | 462, 602, 1326, 1347 |
| MaeII | ACGT | 1 cut(s) | 790 |
| MaeIII | GTNAC | 1 cut(s) | 842 |
| MalI | GATC | 3 cut(s) | 322, 570, 1083 |
| MboI | GATC | 3 cut(s) | 320, 568, 1081 |
| MfeI | CAATTG | 1 cut(s) | 572 |
| MlyI | GAGTC | 1 cut(s) | 1081 |
| MmeI | TCCRAC | 2 cut(s) | 135, 243 |
| Mph1103I | ATGCAT | 1 cut(s) | 940 |
| MreI | CGCCGGCG | 1 cut(s) | 866 |
| MroNI | GCCGGC | 1 cut(s) | 866 |
| MseI | TTAA | 5 cut(s) | 171, 588, 905, 1032, 1095 |
| MslI | CAYNNNNRTG | 2 cut(s) | 789, 1194 |
| MspI | CCGG | 4 cut(s) | 542, 708, 847, 867 |
| MspR9I | CCNGG | 4 cut(s) | 80, 542, 543, 987 |
| MunI | CAATTG | 1 cut(s) | 572 |
| Mva1269I | GAATGC | 1 cut(s) | 618 |
| MvaI | CCWGG | 2 cut(s) | 80, 987 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 446, 611, 624, 944, 1043, 1060, 1152, 1389, 1398 |
| NaeI | GCCGGC | 1 cut(s) | 868 |
| NciI | CCSGG | 2 cut(s) | 542, 543 |
| NdeI | CATATG | 1 cut(s) | 22 |
| NdeII | GATC | 3 cut(s) | 320, 568, 1081 |
| NgoMIV | GCCGGC | 1 cut(s) | 866 |
| NlaIII | CATG | 5 cut(s) | 311, 342, 505, 728, 1199 |
| NlaIV | GGNNCC | 2 cut(s) | 193, 971 |
| NmuCI | GTSAC | 1 cut(s) | 842 |
| NsiI | ATGCAT | 1 cut(s) | 940 |
| NspI | RCATGY | 2 cut(s) | 342, 505 |
| NspV | TTCGAA | 2 cut(s) | 295, 1265 |
| OliI | CACNNNNGTG | 1 cut(s) | 789 |
| PceI | AGGCCT | 1 cut(s) | 1324 |
| PciI | ACATGT | 1 cut(s) | 338 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 867 |
| PctI | GAATGC | 1 cut(s) | 618 |
| PdiI | GCCGGC | 1 cut(s) | 868 |
| PfeI | GAWTC | 4 cut(s) | 694, 775, 817, 828 |
| PfoI | TCCNGGA | 1 cut(s) | 78 |
| PkrI | GCNGC | 3 cut(s) | 613, 1157, 1382 |
| PleI | GAGTC | 1 cut(s) | 1081 |
| PpsI | GAGTC | 1 cut(s) | 1081 |
| PscI | ACATGT | 1 cut(s) | 338 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1131 |
| Psp6I | CCWGG | 2 cut(s) | 78, 985 |
| PspEI | GGTNACC | 1 cut(s) | 842 |
| PspGI | CCWGG | 2 cut(s) | 78, 985 |
| PspN4I | GGNNCC | 2 cut(s) | 193, 971 |
| PspPI | GGNCC | 1 cut(s) | 1399 |
| RsaI | GTAC | 4 cut(s) | 431, 747, 757, 860 |
| RsaNI | GTAC | 4 cut(s) | 430, 746, 756, 859 |
| RseI | CAYNNNNRTG | 2 cut(s) | 789, 1194 |
| SaqAI | TTAA | 5 cut(s) | 171, 588, 905, 1032, 1095 |
| SatI | GCNGC | 3 cut(s) | 612, 1156, 1381 |
| Sau3AI | GATC | 3 cut(s) | 320, 568, 1081 |
| Sau96I | GGNCC | 1 cut(s) | 1399 |
| SchI | GAGTC | 1 cut(s) | 1081 |
| ScrFI | CCNGG | 4 cut(s) | 80, 542, 543, 987 |
| SfaNI | GCATC | 6 cut(s) | 73, 233, 925, 980, 1050, 1092 |
| SfuI | TTCGAA | 2 cut(s) | 295, 1265 |
| SgrAI | CRCCGGYG | 1 cut(s) | 866 |
| SmaI | CCCGGG | 1 cut(s) | 543 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 789, 1194 |
| SmlI | CTYRAG | 1 cut(s) | 1331 |
| SmoI | CTYRAG | 1 cut(s) | 1331 |
| SseBI | AGGCCT | 1 cut(s) | 1324 |
| SsiI | CCGC | 2 cut(s) | 135, 1380 |
| SspMI | CTAG | 4 cut(s) | 462, 602, 1326, 1347 |
| StuI | AGGCCT | 1 cut(s) | 1324 |
| StyD4I | CCNGG | 4 cut(s) | 78, 540, 541, 985 |
| StyI | CCWWGG | 1 cut(s) | 1325 |
| TaaI | ACNGT | 3 cut(s) | 479, 760, 1166 |
| TaiI | ACGT | 1 cut(s) | 793 |
| TaqI | TCGA | 4 cut(s) | 295, 323, 831, 1265 |
| TatI | WGTACW | 1 cut(s) | 745 |
| TauI | GCSGC | 1 cut(s) | 1383 |
| TfiI | GAWTC | 4 cut(s) | 694, 775, 817, 828 |
| Tru1I | TTAA | 5 cut(s) | 171, 588, 905, 1032, 1095 |
| Tru9I | TTAA | 5 cut(s) | 171, 588, 905, 1032, 1095 |
| TscAI | CASTG | 1 cut(s) | 1148 |
| TseFI | GTSAC | 1 cut(s) | 842 |
| TseI | GCWGC | 2 cut(s) | 611, 1155 |
| Tsp45I | GTSAC | 1 cut(s) | 842 |
| TspDTI | ATGAA | 5 cut(s) | 55, 788, 1168, 1184, 1276 |
| TspGWI | ACGGA | 1 cut(s) | 398 |
| TspMI | CCCGGG | 1 cut(s) | 541 |
| TspRI | CASTG | 1 cut(s) | 1148 |
| XapI | RAATTY | 2 cut(s) | 37, 632 |
| XbaI | TCTAGA | 1 cut(s) | 1346 |
| XceI | RCATGY | 2 cut(s) | 342, 505 |
| XmaI | CCCGGG | 1 cut(s) | 541 |
| XmaJI | CCTAGG | 1 cut(s) | 1325 |
| XspI | CTAG | 4 cut(s) | 462, 602, 1326, 1347 |
| Zsp2I | ATGCAT | 1 cut(s) | 940 |