isoform X1
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 172 |
| AccB1I | GGYRCC | 1 cut(s) | 898 |
| AccBSI | CCGCTC | 1 cut(s) | 15 |
| AccI | GTMKAC | 1 cut(s) | 862 |
| AccII | CGCG | 2 cut(s) | 124, 1012 |
| AciI | CCGC | 4 cut(s) | 13, 94, 995, 1012 |
| AclWI | GGATC | 1 cut(s) | 1112 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 2 cut(s) | 205, 536 |
| AcuI | CTGAAG | 2 cut(s) | 474, 1143 |
| AcyI | GRCGYC | 2 cut(s) | 169, 899 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 569, 1140 |
| AflII | CTTAAG | 1 cut(s) | 1064 |
| AhlI | ACTAGT | 1 cut(s) | 964 |
| AjiI | CACGTC | 1 cut(s) | 100 |
| AjnI | CCWGG | 1 cut(s) | 126 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 874, 906 |
| AluBI | AGCT | 4 cut(s) | 800, 805, 926, 1090 |
| AluI | AGCT | 4 cut(s) | 800, 805, 926, 1090 |
| Alw26I | GTCTC | 1 cut(s) | 1076 |
| AlwI | GGATC | 1 cut(s) | 1112 |
| Ama87I | CYCGRG | 1 cut(s) | 1073 |
| AoxI | GGCC | 2 cut(s) | 3, 613 |
| ApeKI | GCWGC | 2 cut(s) | 511, 716 |
| ApoI | RAATTY | 2 cut(s) | 205, 536 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 292 |
| AspLEI | GCGC | 2 cut(s) | 126, 901 |
| AsuHPI | GGTGA | 4 cut(s) | 552, 621, 632, 1139 |
| AvaI | CYCGRG | 1 cut(s) | 1073 |
| AxyI | CCTNAGG | 2 cut(s) | 564, 633 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BanI | GGYRCC | 1 cut(s) | 898 |
| BanII | GRGCYC | 1 cut(s) | 228 |
| BbsI | GAAGAC | 2 cut(s) | 591, 666 |
| BbvCI | CCTCAGC | 1 cut(s) | 922 |
| BbvI | GCAGC | 2 cut(s) | 498, 703 |
| BccI | CCATC | 2 cut(s) | 325, 1133 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1085, 1119 |
| BciT130I | CCWGG | 1 cut(s) | 128 |
| BclI | TGATCA | 1 cut(s) | 322 |
| BcoDI | GTCTC | 1 cut(s) | 1076 |
| BcuI | ACTAGT | 1 cut(s) | 964 |
| BfaI | CTAG | 3 cut(s) | 111, 965, 1022 |
| BfmI | CTRYAG | 1 cut(s) | 782 |
| BfoI | RGCGCY | 1 cut(s) | 902 |
| BfrI | CTTAAG | 1 cut(s) | 1064 |
| BisI | GCNGC | 3 cut(s) | 512, 717, 995 |
| BlpI | GCTNAGC | 1 cut(s) | 801 |
| BlsI | GCNGC | 3 cut(s) | 513, 718, 996 |
| Bme1390I | CCNGG | 1 cut(s) | 128 |
| BmeT110I | CYCGRG | 1 cut(s) | 1073 |
| BmgBI | CACGTC | 1 cut(s) | 100 |
| BmiI | GGNNCC | 2 cut(s) | 357, 900 |
| BmrFI | CCNGG | 1 cut(s) | 128 |
| BmsI | GCATC | 3 cut(s) | 265, 498, 876 |
| BpiI | GAAGAC | 2 cut(s) | 591, 666 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 905, 937 |
| BpmI | CTGGAG | 2 cut(s) | 591, 948 |
| Bpu10I | CCTNAGC | 1 cut(s) | 922 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 801 |
| BsaHI | GRCGYC | 2 cut(s) | 169, 899 |
| BsaI | GGTCTC | 1 cut(s) | 1076 |
| BsaJI | CCNNGG | 2 cut(s) | 616, 856 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 862, 892 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 569, 1140 |
| Bse1I | ACTGG | 2 cut(s) | 397, 768 |
| Bse21I | CCTNAGG | 2 cut(s) | 564, 633 |
| BseBI | CCWGG | 1 cut(s) | 128 |
| BseDI | CCNNGG | 2 cut(s) | 616, 856 |
| BseGI | GGATG | 4 cut(s) | 259, 280, 513, 818 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 569, 1140 |
| BseMII | CTCAG | 5 cut(s) | 178, 624, 792, 903, 936 |
| BseNI | ACTGG | 2 cut(s) | 397, 768 |
| BseRI | GAGGAG | 8 cut(s) | 16, 19, 45, 48, 66, 69, 72, 1022 |
| BseXI | GCAGC | 2 cut(s) | 498, 703 |
| Bsh1236I | CGCG | 2 cut(s) | 124, 1012 |
| BshFI | GGCC | 2 cut(s) | 5, 615 |
| BshNI | GGYRCC | 1 cut(s) | 898 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1073 |
| BslFI | GGGAC | 1 cut(s) | 1028 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 569, 1140 |
| BsmAI | GTCTC | 1 cut(s) | 1076 |
| BsmFI | GGGAC | 1 cut(s) | 1028 |
| BsmI | GAATGC | 2 cut(s) | 415, 889 |
| BsnI | GGCC | 2 cut(s) | 5, 615 |
| Bso31I | GGTCTC | 1 cut(s) | 1076 |
| BsoBI | CYCGRG | 1 cut(s) | 1073 |
| Bsp1286I | GDGCHC | 1 cut(s) | 228 |
| Bsp143I | GATC | 4 cut(s) | 160, 322, 776, 1117 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 801 |
| Bsp19I | CCATGG | 1 cut(s) | 856 |
| BspACI | CCGC | 4 cut(s) | 13, 94, 995, 1012 |
| BspANI | GGCC | 2 cut(s) | 5, 615 |
| BspCNI | CTCAG | 5 cut(s) | 177, 625, 793, 904, 935 |
| BspFNI | CGCG | 2 cut(s) | 124, 1012 |
| BspLI | GGNNCC | 2 cut(s) | 357, 900 |
| BspPI | GGATC | 1 cut(s) | 1112 |
| BspQI | GCTCTTC | 1 cut(s) | 726 |
| BspT107I | GGYRCC | 1 cut(s) | 898 |
| BspTI | CTTAAG | 1 cut(s) | 1064 |
| BspTNI | GGTCTC | 1 cut(s) | 1076 |
| BsrBI | CCGCTC | 1 cut(s) | 15 |
| BsrI | ACTGG | 2 cut(s) | 397, 768 |
| BssECI | CCNNGG | 2 cut(s) | 616, 856 |
| BssMI | GATC | 4 cut(s) | 160, 322, 776, 1117 |
| BssNI | GRCGYC | 2 cut(s) | 169, 899 |
| BssT1I | CCWWGG | 1 cut(s) | 856 |
| Bst2UI | CCWGG | 1 cut(s) | 128 |
| Bst4CI | ACNGT | 2 cut(s) | 271, 735 |
| Bst6I | CTCTTC | 4 cut(s) | 37, 45, 726, 1040 |
| BstACI | GRCGYC | 2 cut(s) | 169, 899 |
| BstAFI | CTTAAG | 1 cut(s) | 1064 |
| BstC8I | GCNNGC | 3 cut(s) | 663, 1027, 1046 |
| BstDEI | CTNAG | 9 cut(s) | 164, 404, 430, 564, 633, 801, 894, 912, 922 |
| BstDSI | CCRYGG | 1 cut(s) | 856 |
| BstF5I | GGATG | 4 cut(s) | 259, 280, 513, 818 |
| BstFNI | CGCG | 2 cut(s) | 124, 1012 |
| BstH2I | RGCGCY | 1 cut(s) | 902 |
| BstHHI | GCGC | 2 cut(s) | 126, 901 |
| BstKTI | GATC | 4 cut(s) | 163, 325, 779, 1120 |
| BstMAI | GTCTC | 1 cut(s) | 1076 |
| BstMBI | GATC | 4 cut(s) | 160, 322, 776, 1117 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 143, 306 |
| BstNI | CCWGG | 1 cut(s) | 128 |
| BstNSI | RCATGY | 2 cut(s) | 304, 1048 |
| BstSCI | CCNGG | 1 cut(s) | 126 |
| BstSFI | CTRYAG | 1 cut(s) | 782 |
| BstUI | CGCG | 2 cut(s) | 124, 1012 |
| BstV1I | GCAGC | 2 cut(s) | 498, 703 |
| BstV2I | GAAGAC | 2 cut(s) | 591, 666 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 373 |
| Bsu36I | CCTNAGG | 2 cut(s) | 564, 633 |
| BsuRI | GGCC | 2 cut(s) | 5, 615 |
| BtgI | CCRYGG | 1 cut(s) | 856 |
| BtrI | CACGTC | 1 cut(s) | 100 |
| BtsCI | GGATG | 4 cut(s) | 259, 280, 513, 818 |
| Cac8I | GCNNGC | 3 cut(s) | 663, 1027, 1046 |
| CfoI | GCGC | 2 cut(s) | 126, 901 |
| CviAII | CATG | 5 cut(s) | 301, 542, 580, 857, 1045 |
| DdeI | CTNAG | 9 cut(s) | 164, 404, 430, 564, 633, 801, 894, 912, 922 |
| DinI | GGCGCC | 1 cut(s) | 900 |
| DpnI | GATC | 4 cut(s) | 162, 324, 778, 1119 |
| DpnII | GATC | 4 cut(s) | 160, 322, 776, 1117 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 4 cut(s) | 37, 45, 726, 1040 |
| EarI | CTCTTC | 4 cut(s) | 37, 45, 726, 1040 |
| EciI | GGCGGA | 1 cut(s) | 83 |
| Eco130I | CCWWGG | 1 cut(s) | 856 |
| Eco147I | AGGCCT | 1 cut(s) | 615 |
| Eco24I | GRGCYC | 1 cut(s) | 228 |
| Eco31I | GGTCTC | 1 cut(s) | 1076 |
| Eco57I | CTGAAG | 2 cut(s) | 474, 1143 |
| Eco81I | CCTNAGG | 2 cut(s) | 564, 633 |
| Eco88I | CYCGRG | 1 cut(s) | 1073 |
| EcoRII | CCWGG | 1 cut(s) | 126 |
| EcoT14I | CCWWGG | 1 cut(s) | 856 |
| EcoT22I | ATGCAT | 1 cut(s) | 891 |
| EcoT38I | GRGCYC | 1 cut(s) | 228 |
| EgeI | GGCGCC | 1 cut(s) | 900 |
| EheI | GGCGCC | 1 cut(s) | 900 |
| ErhI | CCWWGG | 1 cut(s) | 856 |
| FaeI | CATG | 5 cut(s) | 304, 545, 583, 860, 1048 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 447, 479 |
| FaqI | GGGAC | 1 cut(s) | 1028 |
| FatI | CATG | 5 cut(s) | 300, 541, 579, 856, 1044 |
| FauI | CCCGC | 1 cut(s) | 1005 |
| FbaI | TGATCA | 1 cut(s) | 322 |
| FblI | GTMKAC | 1 cut(s) | 862 |
| Fnu4HI | GCNGC | 3 cut(s) | 512, 717, 995 |
| FokI | GGATG | 4 cut(s) | 266, 287, 520, 805 |
| FriOI | GRGCYC | 1 cut(s) | 228 |
| Fsp4HI | GCNGC | 3 cut(s) | 512, 717, 995 |
| FspBI | CTAG | 3 cut(s) | 111, 965, 1022 |
| GlaI | GCGC | 2 cut(s) | 125, 900 |
| GluI | GCNGC | 3 cut(s) | 512, 717, 995 |
| GsuI | CTGGAG | 2 cut(s) | 591, 948 |
| HaeII | RGCGCY | 1 cut(s) | 902 |
| HaeIII | GGCC | 2 cut(s) | 5, 615 |
| HhaI | GCGC | 2 cut(s) | 126, 901 |
| Hin1I | GRCGYC | 2 cut(s) | 169, 899 |
| Hin1II | CATG | 5 cut(s) | 304, 545, 583, 860, 1048 |
| Hin6I | GCGC | 2 cut(s) | 124, 899 |
| HinP1I | GCGC | 2 cut(s) | 124, 899 |
| HinfI | GANTC | 6 cut(s) | 117, 175, 211, 244, 485, 598 |
| HphI | GGTGA | 4 cut(s) | 552, 621, 632, 1139 |
| Hpy166II | GTNNAC | 1 cut(s) | 863 |
| Hpy188I | TCNGA | 7 cut(s) | 167, 174, 322, 454, 481, 811, 913 |
| Hpy188III | TCNNGA | 5 cut(s) | 215, 464, 602, 1073, 1121 |
| Hpy8I | GTNNAC | 1 cut(s) | 863 |
| Hpy99I | CGWCG | 2 cut(s) | 104, 161 |
| HpyAV | CCTTC | 2 cut(s) | 28, 1118 |
| HpyCH4III | ACNGT | 2 cut(s) | 271, 735 |
| HpyCH4IV | ACGT | 3 cut(s) | 99, 169, 234 |
| HpyCH4V | TGCA | 7 cut(s) | 524, 545, 661, 730, 869, 889, 1044 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 143, 306 |
| HpyF3I | CTNAG | 9 cut(s) | 164, 404, 430, 564, 633, 801, 894, 912, 922 |
| HpySE526I | ACGT | 3 cut(s) | 99, 169, 234 |
| Hsp92I | GRCGYC | 2 cut(s) | 169, 899 |
| Hsp92II | CATG | 5 cut(s) | 304, 545, 583, 860, 1048 |
| HspAI | GCGC | 2 cut(s) | 124, 899 |
| KasI | GGCGCC | 1 cut(s) | 898 |
| Ksp22I | TGATCA | 1 cut(s) | 322 |
| Kzo9I | GATC | 4 cut(s) | 160, 322, 776, 1117 |
| LguI | GCTCTTC | 1 cut(s) | 726 |
| LmnI | GCTCC | 3 cut(s) | 20, 929, 1087 |
| Lsp1109I | GCAGC | 2 cut(s) | 498, 703 |
| LweI | GCATC | 3 cut(s) | 265, 498, 876 |
| MaeI | CTAG | 3 cut(s) | 111, 965, 1022 |
| MaeII | ACGT | 3 cut(s) | 99, 169, 234 |
| MalI | GATC | 4 cut(s) | 162, 324, 778, 1119 |
| MbiI | CCGCTC | 1 cut(s) | 15 |
| MboI | GATC | 4 cut(s) | 160, 322, 776, 1117 |
| MhlI | GDGCHC | 1 cut(s) | 228 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 5 cut(s) | 205, 326, 536, 986, 1149 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| Mly113I | GGCGCC | 1 cut(s) | 899 |
| MmeI | TCCRAC | 1 cut(s) | 922 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| Mph1103I | ATGCAT | 1 cut(s) | 891 |
| MroXI | GAANNNNTTC | 1 cut(s) | 292 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 4 cut(s) | 773, 831, 1007, 1065 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspA1I | CMGCKG | 1 cut(s) | 926 |
| MspCI | CTTAAG | 1 cut(s) | 1064 |
| MspR9I | CCNGG | 1 cut(s) | 128 |
| Mva1269I | GAATGC | 2 cut(s) | 415, 889 |
| MvaI | CCWGG | 1 cut(s) | 128 |
| MvnI | CGCG | 2 cut(s) | 124, 1012 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 143, 306 |
| NarI | GGCGCC | 1 cut(s) | 899 |
| NcoI | CCATGG | 1 cut(s) | 856 |
| NdeII | GATC | 4 cut(s) | 160, 322, 776, 1117 |
| NlaIII | CATG | 5 cut(s) | 304, 545, 583, 860, 1048 |
| NlaIV | GGNNCC | 2 cut(s) | 357, 900 |
| NsiI | ATGCAT | 1 cut(s) | 891 |
| NspI | RCATGY | 2 cut(s) | 304, 1048 |
| PaeI | GCATGC | 1 cut(s) | 1048 |
| PaeR7I | CTCGAG | 1 cut(s) | 1073 |
| PceI | AGGCCT | 1 cut(s) | 615 |
| PciSI | GCTCTTC | 1 cut(s) | 726 |
| PctI | GAATGC | 2 cut(s) | 415, 889 |
| PdmI | GAANNNNTTC | 1 cut(s) | 292 |
| PfeI | GAWTC | 6 cut(s) | 117, 175, 211, 244, 485, 598 |
| PkrI | GCNGC | 3 cut(s) | 513, 718, 996 |
| PluTI | GGCGCC | 1 cut(s) | 902 |
| Psp6I | CCWGG | 1 cut(s) | 126 |
| PspGI | CCWGG | 1 cut(s) | 126 |
| PspN4I | GGNNCC | 2 cut(s) | 357, 900 |
| PvuII | CAGCTG | 1 cut(s) | 926 |
| SapI | GCTCTTC | 1 cut(s) | 726 |
| SaqAI | TTAA | 4 cut(s) | 773, 831, 1007, 1065 |
| SatI | GCNGC | 3 cut(s) | 512, 717, 995 |
| Sau3AI | GATC | 4 cut(s) | 160, 322, 776, 1117 |
| ScrFI | CCNGG | 1 cut(s) | 128 |
| SduI | GDGCHC | 1 cut(s) | 228 |
| SfaNI | GCATC | 3 cut(s) | 265, 498, 876 |
| SfcI | CTRYAG | 1 cut(s) | 782 |
| SfoI | GGCGCC | 1 cut(s) | 900 |
| Sfr274I | CTCGAG | 1 cut(s) | 1073 |
| SlaI | CTCGAG | 1 cut(s) | 1073 |
| SmlI | CTYRAG | 2 cut(s) | 1064, 1073 |
| SmoI | CTYRAG | 2 cut(s) | 1064, 1073 |
| SpeI | ACTAGT | 1 cut(s) | 964 |
| SphI | GCATGC | 1 cut(s) | 1048 |
| Sse9I | AATT | 5 cut(s) | 205, 326, 536, 986, 1149 |
| SseBI | AGGCCT | 1 cut(s) | 615 |
| SsiI | CCGC | 4 cut(s) | 13, 94, 995, 1012 |
| SspDI | GGCGCC | 1 cut(s) | 898 |
| SspMI | CTAG | 3 cut(s) | 111, 965, 1022 |
| StuI | AGGCCT | 1 cut(s) | 615 |
| StyD4I | CCNGG | 1 cut(s) | 126 |
| StyI | CCWWGG | 1 cut(s) | 856 |
| TaaI | ACNGT | 2 cut(s) | 271, 735 |
| TaiI | ACGT | 3 cut(s) | 102, 172, 237 |
| TaqI | TCGA | 3 cut(s) | 156, 1074, 1081 |
| TasI | AATT | 5 cut(s) | 205, 326, 536, 986, 1149 |
| TauI | GCSGC | 1 cut(s) | 997 |
| TfiI | GAWTC | 6 cut(s) | 117, 175, 211, 244, 485, 598 |
| Tru1I | TTAA | 4 cut(s) | 773, 831, 1007, 1065 |
| Tru9I | TTAA | 4 cut(s) | 773, 831, 1007, 1065 |
| TseI | GCWGC | 2 cut(s) | 511, 716 |
| TspDTI | ATGAA | 4 cut(s) | 10, 296, 530, 644 |
| Vha464I | CTTAAG | 1 cut(s) | 1064 |
| XapI | RAATTY | 2 cut(s) | 205, 536 |
| XceI | RCATGY | 2 cut(s) | 304, 1048 |
| XhoI | CTCGAG | 1 cut(s) | 1073 |
| XmiI | GTMKAC | 1 cut(s) | 862 |
| XmnI | GAANNNNTTC | 1 cut(s) | 292 |
| XspI | CTAG | 3 cut(s) | 111, 965, 1022 |
| ZraI | GACGTC | 1 cut(s) | 170 |
| Zsp2I | ATGCAT | 1 cut(s) | 891 |